mRNA_Ecto-sp13_S_contig12200.1854.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12200.1854.1
Unique NamemRNA_Ecto-sp13_S_contig12200.1854.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12200.1854.1 vs. uniprot
Match: D7G1V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V8_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 1.680e-111
Identity = 169/180 (93.89%), Postives = 172/180 (95.56%), Query Frame = 1 
Query:    1 TVEDDCVRPVRFKTDAVTSANTGVPARFRMSEMRKLPGTPKAVERLRAKALEGGQIGIVRLHQALQRRFRANHTESRPSDVTQHRLLQPNDLMEGLSSAGLTPLTAFDAKKVIEFCTKGGDDGASITDVLEELRFGGPVDDDYRVKAVKGAFRELDEGGSGRISARGLKRRYDAAATSIR 540
            TVEDDCVRPVRFKTDAVTSANTGVPARFRMSEMRKLPGTPKAVERLRAKALEGGQ+GIVRLHQALQRR +ANHTE R SDV QHRLLQPNDLMEGLS AGLTPLTAFDAKKVIEFCTKGGDDGASITDVLEELRFGGPVDDDYRV+AVKGAFRELDEGGSG ISARGLKRRYDAAA S R
Sbjct:   15 TVEDDCVRPVRFKTDAVTSANTGVPARFRMSEMRKLPGTPKAVERLRAKALEGGQMGIVRLHQALQRRLQANHTEPRTSDVAQHRLLQPNDLMEGLSGAGLTPLTAFDAKKVIEFCTKGGDDGASITDVLEELRFGGPVDDDYRVQAVKGAFRELDEGGSGLISARGLKRRYDAAAASTR 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12200.1854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1V8_ECTSI1.680e-11193.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12200contigEcto-sp13_S_contig12200:2237..5118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size739
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-07_003940.3
Cds size510
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12200.1854.1prot_Ecto-sp13_S_contig12200.1854.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12200 2764..5031 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.618423-UTR-Ecto-sp13_S_contig12200:2236..23461681462648.618423-UTR-Ecto-sp13_S_contig12200:2236..2346Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12200 2237..2346 -
1681462648.627958-UTR-Ecto-sp13_S_contig12200:2731..27631681462648.627958-UTR-Ecto-sp13_S_contig12200:2731..2763Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12200 2732..2763 -
1681462648.6716995-UTR-Ecto-sp13_S_contig12200:5031..51181681462648.6716995-UTR-Ecto-sp13_S_contig12200:5031..5118Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12200 5032..5118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.6398964-CDS-Ecto-sp13_S_contig12200:2763..28171681462648.6398964-CDS-Ecto-sp13_S_contig12200:2763..2817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12200 2764..2817 -
1681462648.6480317-CDS-Ecto-sp13_S_contig12200:3174..33841681462648.6480317-CDS-Ecto-sp13_S_contig12200:3174..3384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12200 3175..3384 -
1681462648.656099-CDS-Ecto-sp13_S_contig12200:4072..42581681462648.656099-CDS-Ecto-sp13_S_contig12200:4072..4258Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12200 4073..4258 -
1681462648.663717-CDS-Ecto-sp13_S_contig12200:4971..50311681462648.663717-CDS-Ecto-sp13_S_contig12200:4971..5031Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12200 4972..5031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12200.1854.1

>prot_Ecto-sp13_S_contig12200.1854.1 ID=prot_Ecto-sp13_S_contig12200.1854.1|Name=mRNA_Ecto-sp13_S_contig12200.1854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
MSEMRKLPGTPKAVERLRAKALEGGQIGIVRLHQALQRRFRANHTESRPS
DVTQHRLLQPNDLMEGLSSAGLTPLTAFDAKKVIEFCTKGGDDGASITDV
LEELRFGGPVDDDYRVKAVKGAFRELDEGGSGRISARGLKRRYDAAATSI
RRWYRREMSKTRNPKGSLG*
back to top

mRNA from alignment at Ecto-sp13_S_contig12200:2237..5118-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12200.1854.1 ID=mRNA_Ecto-sp13_S_contig12200.1854.1|Name=mRNA_Ecto-sp13_S_contig12200.1854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12200:2237..5118- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGTGGAAGACGATTGCGTTCGCCCCGTTCGGTTCAAGACCGACGCGGT
AACCAGCGCTAACACGGGCGTTCCGGCCCGTTTCCGCATGTCCGAGATGA
GAAAGCTTCCGGGAACCCCAAAGGCTGTTGAACGACTTCGCGCAAAGGTT
TGCTCATACGTTCCCACATCCTACCGACCCCGTCGTCACCACATGATTCA
TCTGCGCAAGTCGGTTTGCCGATATCGATGTGCTAGGTGTAGCTCAGATC
CTGTCTTATTCAATGCGCGGAATACGTGTGTCAATGTCGGTTGATGTTTG
AGGCCAGAAGGCTCGCTCCCGATAATCGGGTCAACACCTGTCAATGTCGC
TGCACGGTTAATTTCACCGTAAGCCTAGAAGTCTTCTTCCTGTGATAATA
ACTGGACGGTGATTTTGGGTTATTGTCTTCGAGGTGTGTCCTCGCAACGA
CCCTCGAAAAGATCTTCGCAACGATCCTTGCAGCATAATTTTATGCACGT
CGTGGCAGACCTTTCGATCGGGGTGTTTGACAGAGGAAGCCGTGAAAGGA
GGCTTTTGGAGGCTCTCCAGATGGATGCAAGAGAACCAAACTTGGCCACA
TCCATCGACCAGTTTACCGATCTCGATGGACCAACGCCCAATCGAAAGGT
TGTCCCGTTTCGACGGGTTCCATCTTTCATCCTTGATACAAGCCGTTCTG
ACTACCGTCTTCCGTCCAACCGCCTGTCCCTGGTCCTGTCTCGTAAACGT
TTCTCTCCTGCGTATTGCGACCGCCAGCTCCGCTCAAATACCTTGGCCTC
CCACCTTCCCACCGTCTGCTCCCCGTCTCCACGCACTTCGCCCGCATGCC
ACCATCGCAGGCCCTCGAAGGTGGACAGATAGGAATAGTCCGACTCCATC
AGGCGTTGCAACGGCGGTTTCGAGCAAACCACACGGAGTCTCGCCCCAGT
GACGTGACGCAACACCGATTGCTACAGCCGAATGACCTGATGGAGGGGCT
AAGCAGTGCGGGGTTGACACCGCTGACCGCGTTCGACGCGAAAAAGGTGC
ACGAAGTGCAATCAATCATCCGATTATTTGTGATGGAAATAGTGGCTTTA
TGAAGGCTGATCGTAATTTGTGGTCAAGCTGAGACTGTGCAGGCGTCGTT
TGAAGGCCTCGGTTGGGTGCAGCTTTGTTGTTGGGAAACATGTTCAGCAC
ATATCTCCACCCCGCACACGGGAAAACCGCAATCAATCGGAGGGGGATAG
AACAAACCCACTCTGAGGTAGGTCGCGCCTTCACGAACGAAGGGTTAATG
CTTGATCTTTGTCTCCTTCAGCATGGTGCCAACACTAATTACGACACGTA
GGGAGTCGATCGCTCCCGTGCGGAGGTCTTGGGTGCACGCCGTGAGTTTT
CTCTGACACCTCTACCGCGTGGTGTCTCGAGATTGTGCGCTGTCTGTAAC
CTCCTCGTACTATTGTCTTGGGGGATATTCACGCCACCTAACGCCCAATC
AGCAGACCCGGTCCTCCTTGATCACCAGCCTGTAGTTGCTGCGGGAACGG
CCACCAGGGTTGTATGCAAAGCGACAACTCAACCCAAACTCTGCAACCTC
GCGGCCATTTTTCTGCACCATGGGCAGCTCTTTCGCTTGACAGTGGCACG
AAAAGCGGCATACTTGGCCGGTACCACTGCTCGACGGCCATCGTCGGTGC
GTAAAATCAATTTCCCGACACTGTCGATATTCAGGTGATCGAGTTTTGCA
CGAAGGGAGGCGACGATGGGGCGAGTATTACGGACGTCCTTGAGGAGCTC
CGTTTCGGTGGCCCGGTCGATGATGACTACCGGGTCAAAGCCGTGAAGGG
CGCGTTTCGAGAGTTGGACGAGGGTGGATCAGGCCGTATCTCAGCTCGGG
GCCTGAAGAGACGATACGACGCTGCAGCTACGAGCATCAGGCGCGTCCGC
TGCGATTTGACACTTGTTGAATCTATTGCTCCCAGCTCAATTCAAAGAGT
CAATGCTCCTGTGGCCCGTGCCTCGCCGAATATGGTGTACGTACCACGCA
GCAACTCTTGAGATGCTTGAACTTTTGTGACTCCGCTCAGAGACGTAGTA
GTTCGAGGCTACGGTGTACTACTTGTAAGAAATGTCCCGTTCCCTGGCGG
GTACACGGACGAAGTGCCTACGTGGTCAAACTCGACATCCGACGCTAGCT
AAGAGATCTAGGGGTCGCGAGCTTTACAAAGATGGTCCAGTGACACGGAT
GCGAAATAAACTGAGAACCGCTGCCCTCCGTTGCGATGACTCTGGCAGCA
GTGGTACCGCCGTGAAATGTCCAAAACAAGAAATCCGAAGGGCTCTCTTG
GATAACTTTTCGCTCTACCAGGCAAGTACTTCATTTCGTTTTAAACAATA
TTGAAGCTGCCCCGCTTTCGAAGAGAAACCCATACAGCCTTACGTACATG
CAATGTTCGGCGAGCAAGGACGCCCCTACTGCTGCTGTCTATCCACCGAC
AAAGAGCACATGGAAAGCTGTACCCCTATTGTTCCATTTCCTGCCGCACG
GCAAGGCAGACGCTTTGATCGGTTATTGACGACAGAAACCTTCATCCTTA
GTTCACGGAGATTTTGCTTTTTATTGTCCAACGGTAGGCTGATACTTCCC
GCTCGACCTCGTTAAGCTTTACCTAACCAATTTCCAGGTGTGCTTTCGTG
TGAGACGTGAGTTTCCGACAGGCAAGCTAACCACACTTTCTCCCCCATTA
CCTTAACACCAGGATACTGAAGGCGATGAAATGACGAGCGCAGGCTTTGA
CGGCTTCGTCGTGGACGCTTATTGCGGCATGGAAAGCGCCGGGGAATTTG
ACGCTATGCTAGAAGCTTTAGTCTGCAATGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12200:2237..5118-

>mRNA_Ecto-sp13_S_contig12200.1854.1 ID=mRNA_Ecto-sp13_S_contig12200.1854.1|Name=mRNA_Ecto-sp13_S_contig12200.1854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12200:2237..5118- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGAGATGAGAAAGCTTCCGGGAACCCCAAAGGCTGTTGAACGACT
TCGCGCAAAGGCCCTCGAAGGTGGACAGATAGGAATAGTCCGACTCCATC
AGGCGTTGCAACGGCGGTTTCGAGCAAACCACACGGAGTCTCGCCCCAGT
GACGTGACGCAACACCGATTGCTACAGCCGAATGACCTGATGGAGGGGCT
AAGCAGTGCGGGGTTGACACCGCTGACCGCGTTCGACGCGAAAAAGGTGA
TCGAGTTTTGCACGAAGGGAGGCGACGATGGGGCGAGTATTACGGACGTC
CTTGAGGAGCTCCGTTTCGGTGGCCCGGTCGATGATGACTACCGGGTCAA
AGCCGTGAAGGGCGCGTTTCGAGAGTTGGACGAGGGTGGATCAGGCCGTA
TCTCAGCTCGGGGCCTGAAGAGACGATACGACGCTGCAGCTACGAGCATC
AGGCGCTGGTACCGCCGTGAAATGTCCAAAACAAGAAATCCGAAGGGCTC
TCTTGGATAA
back to top