mRNA_Ecto-sp13_S_contig1220.1853.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1220.1853.1
Unique NamemRNA_Ecto-sp13_S_contig1220.1853.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Match: D8LFE8_ECTSI (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE8_ECTSI)

HSP 1 Score: 1078 bits (2787), Expect = 0.000e+0
Identity = 530/555 (95.50%), Postives = 541/555 (97.48%), Query Frame = 1 
Query:    1 MAKATTKTPPAKKNVPKKDPAANPAFKWQMGGLIAGIIVALASTTEPGRQALRSVGLEDVVLHYTRGKSRSPEAQVEQQPLPEKAVEVIPSVCLTQSCEVKVFPNGEHEGGKSFTVSPADVEGLEDLGEWLGPKMECVSQGMRRDEPQYCKVFNSVGVRVPSMASVEDGETLYVVPQNRNFVWPTVKIGRKVTVPHVKTPLGAEVVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLESAEGHDFKSEGLGTNRFATVVLYFNDVKEGGETVFTHAPGIDHHLVPDTKVPVREVLENLDLPRGGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGLSSVDPETGRTVDQASGVNKAGNNIVPDPTFQQVQAAFLNEDVEGASLWFDGKQLWMDRDWRVGETFKINTFLTHRWVVKVNGAEVKTWLVSERTKDQSFVLSKASLA 1665
            MAKATTK PP KKNVPKKDPAANPAFKWQMGGLIAGIIVALASTTEPGRQALRSVGLEDVVLHYTRGKSRSP+A+V+QQPLPEKAVEVIPSVCLTQ C+VKVF NGEHEGGKSFTVSPADVEGL+DLGEWLGPKMECVSQGMRRDEP+YCKVFN VGVRVPSMASVEDGETLYVVPQNRNFVWPTVKIGRKVTVPHVK+PLGAEVVLETLSHSPRVFSLYNFMDMEEAD+IIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHT TAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLESAEGHDFKSEGLGTNRFATVVLYFNDV+EGGETVFTHAPGIDHHLVPDTKVPVREVLENLDLPR GWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVI+GQKWAANLWVWNGPRYGLSSVDPETGRTVD      KAGNNIVPDPTFQ VQAAFLNEDVEGASLWFDGKQLWMDRDWR+GETFKINTFLTHRWVVKVNGAEVKTWLVSERTKDQSFVLSKASLA
Sbjct:    1 MAKATTKNPPTKKNVPKKDPAANPAFKWQMGGLIAGIIVALASTTEPGRQALRSVGLEDVVLHYTRGKSRSPKARVDQQPLPEKAVEVIPSVCLTQPCKVKVFHNGEHEGGKSFTVSPADVEGLQDLGEWLGPKMECVSQGMRRDEPKYCKVFNRVGVRVPSMASVEDGETLYVVPQNRNFVWPTVKIGRKVTVPHVKSPLGAEVVLETLSHSPRVFSLYNFMDMEEADSIIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHTNTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLESAEGHDFKSEGLGTNRFATVVLYFNDVREGGETVFTHAPGIDHHLVPDTKVPVREVLENLDLPRSGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIDGQKWAANLWVWNGPRYGLSSVDPETGRTVD------KAGNNIVPDPTFQ-VQAAFLNEDVEGASLWFDGKQLWMDRDWRIGETFKINTFLTHRWVVKVNGAEVKTWLVSERTKDQSFVLSKASLA 548
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Match: A0A835YK64_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK64_9STRA)

HSP 1 Score: 420 bits (1080), Expect = 9.870e-135
Identity = 232/502 (46.22%), Postives = 324/502 (64.54%), Query Frame = 1 
Query:  298 VKVFPNGEHEGGKSFTVSPADVEGLEDLGEWLGPKMEC--VSQGMRRDEPQYCKVFNSVGVRVPSMASVEDGETLYVVPQNRNFVWPTVKIGRKVTVPHVKTPLGAEVVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLESAEG--HDFKSEGLGTNRFATVVLYFNDVKEGGETVFTHAPGIDHHLVPD-TKVPVREVLENL------------DLPRGGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGLSSVDPETGRTVDQASGVNKAGNNIVPDPTFQQVQAAFLNEDVEGASLWFDGKQLWMDRDWRVGETFKINTFLTHRWVVKVNGAEVKTWLVSERTKDQSFVLSKASLA*PGLCYMPGVTHRRSERKNTTEVV--RWH 1746
            V VF NGEH  G    + P + + +E L   L PK+ C  V +   R+  + CKV+N +  RV  +A V DGE+LY+VP +R FVWPTVK+GR+V VPHVK   GA + +ETLS SPR++ L+NF++ EE++ II++AL M+ + ++LKRSSTGTK K+I++TRTS+NAF+T ++TA  LK+RIF LLG++ Y +TWADGLQVLRYN S+ Y+ H+DYL+ + G  H F S  LGTNRFATVVLY NDV+ GGETVFT         +PD  ++ V E +E L             + +G WEE+L   CR  + V PK+G A+LFYNQ PDG++D +S HGACPV+ GQKWAANLWVWNGPRYG + +D + GRTV++           +    F+ +  A  N DV GA+L+++  Q W  ++W  G   +IN+F  H+W  +V    +K+W +SER ++Q+ +LS+ +L  P    +P  T +    +N    V  RWH
Sbjct:   76 VMVFMNGEHTEGVDVLLDPEN-DAVEILDTLLTPKLGCKRVVEMPDRNPDEPCKVYNGMAQRVTKVAEVTDGESLYLVPPDRLFVWPTVKVGRRVVVPHVKGKRGAAMEVETLSLSPRLYMLHNFVNEEESNQIIKEALEMSDDDFKLKRSSTGTKEKSIAQTRTSENAFITASETAIGLKKRIFALLGMK-YVDTWADGLQVLRYNVSKGYIDHYDYLDESSGQDHSFDSGHLGTNRFATVVLYLNDVEAGGETVFTLGD------IPDGPEIDVDEAIEQLRNSEEAAVLAAAGVEKGSWEERLTALCRTRLAVKPKQGSAILFYNQVPDGKRDRASRHGACPVLAGQKWAANLWVWNGPRYGYTELD-DHGRTVERKG---------LEGGLFKILLTA-KNIDVPGAALYYEN-QFW--KEWEPGHDLRINSFTGHKWNARVGDTVIKSWALSERRQEQTILLSRDNLDAP----LPKSTRKAKVDENDPLEVNRRWH 551
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Match: A0A7S2V4E4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4E4_9STRA)

HSP 1 Score: 330 bits (845), Expect = 2.490e-101
Identity = 185/443 (41.76%), Postives = 259/443 (58.47%), Query Frame = 1 
Query:  247 EKAVEVIPSVCLTQ---SCEVKVFPNGEHEGGKSFTVSPADVEGLEDLGEWLGPKMECVSQGMRRDEPQYCKVFNSVGVRVPSMAS--VEDGETLYVVPQNRNFVWPTVKIGRKVTVPHVKTPLGAE-VVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLESAEG--HDFKSEGLGTNRFATVVLYFNDVKEGGETVFTHAPGIDHHLVPDTK----VPVREVLENLDLPRGGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGLSSVDPETGRTVDQASGVNKAGNNIVPDPTFQQVQAAFLNEDVEGASL-WFDGKQLWMDRDWRVGE 1536
            E   E +  VC+     S +V VFPNG HE G  F +   D   +ED+   L P    + Q      P+ CK++N++G R  S A   V +   +++VP++R F+WP++++G  VT+ H+   +G + + +ETLS SPRVF L+NF   EEAD ++   L    E+ RLKRSS G  G  ++  RTS+N F   +  A ALKRR F+LLG EEY E+W DGLQVLRYN S AY  H D     E   H++ S G G+NR+AT++LY  DV+EGGETVF  AP  D  ++P  +    V  R+++E  +  R  W+E+++ +C+  + V PK+G A+LFY+Q+PDG  D +S HG CPV+ G KWAAN+W+WNGPR G + +  E G  +D           +VPD   Q   A F N DV GA L W D    W D D  +G+
Sbjct:   22 ELVCEDVNGVCVESDSGSRKVNVFPNGNHEEGLHFVLKEEDCARVEDVSSLLAPLFPELCQ------PKGCKLYNAIGQRWRSCADLPVLEEAMVFLVPEHRPFMWPSIEVGHAVTIDHIDDLIGQQNLTVETLSTSPRVFRLHNFFTAEEADMLVNHMLKNKDESERLKRSSVGATGYTVNSERTSENGFDNFSPVAMALKRRSFELLGFEEYKESWVDGLQVLRYNLSTAYNPHMDPFPVGEDQYHNYDSAGKGSNRYATILLYMTDVEEGGETVFPKAPAADGSMMPLAQAVDDVRERKLVEMFE--RRSWQERMVAECQHRLAVKPKKGDAILFYSQNPDGTVDENSLHGGCPVLSGTKWAANIWIWNGPRVGYTKL-LEDGSLID----------TLVPDE--QPFVAVFHNMDVPGAELLWHDN---WRDTDSFIGK 440
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Match: W7TKQ8_9STRA (Prolyl 4-hydroxylase, alpha subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKQ8_9STRA)

HSP 1 Score: 332 bits (851), Expect = 1.210e-100
Identity = 192/467 (41.11%), Postives = 267/467 (57.17%), Query Frame = 1 
Query:  280 LTQSCEVKVFPNGEHEGGKSFTVSPADVEGLEDLGEWLGPKMECVSQGMRRDEPQYCKVFNSVGVRVPSMASVEDGETLYVVPQNRNFVWPTVKIGRKVTVPHVKTPL-GAEVVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLE--SAEGHDFKSEGLG-TNRFATVVLYFNDVKEGGETVFTHAPGIDHHL--VPDTKVPVREVLENLDLPRGGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGLSSVDPETGRTVDQASGVNKAGNNIVPDPTFQQVQAAFLNEDVEGASLWFDGKQLWMDRDWRV---GET-FKINTFLTHRWVVK-----VNGAEVKTWLV-SERTKD 1632
            L+++  V +  NGE     S  + P     +E+L   +G  ++    G        C+VF+  G  + ++ ++ D + L+ VP +R+FVWP  +IG +V VP V + L G  ++LETLS SPRVF L NF+  E+AD +IE  LG+T   + LKRS+TGT+G  +S  RTS+NAF T +  A  LKRR+F LLG+  Y ETWADGLQVLRYN S+AY+ H DYLE  S   H+F S   G TNRFATV+LY  DV+EGGETVF     ++  +    + +   R      DL  G WEE++   C   + V P++G+AVLFY+QHPDGR D  S HGACPV++G KWAANLWVWNGPR+G S+          +A G               ++QA F +  VEG +L+      W    W     GE   K  T+  H+W V+      +GA + +W + +E+ +D
Sbjct:  135 LSRNMTVLIHDNGESTPAGSLYLEPKTTTSIEELKSAVGLVIDACHGGT-------CRVFDRYGYEIKALGALHDEQLLFAVPPSRHFVWPAFEIGHRVAVPGVTSSLPGHPIILETLSDSPRVFMLENFLSAEDADEVIETTLGITAAGFALKRSTTGTQGAVVSSQRTSENAFDTTSPVAMKLKRRVFDLLGMRPYVETWADGLQVLRYNASKAYIPHMDYLEFDSNADHNFDSASPGGTNRFATVLLYLTDVEEGGETVFPLGEPLEKEMRTTQEVQAEARARGRAADLKPGSWEEEMTETCISRLAVKPRKGRAVLFYSQHPDGRPDERSLHGACPVVKGVKWAANLWVWNGPRFGHSATS-----LAKEAEG---------------KIQAVFSSA-VEGVALY------WETTRWGKMGPGEAELKAMTYQGHKWNVRRDEGDEHGAVLASWTIEAEKAED 567
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Match: A0A4D9CQP1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQP1_9STRA)

HSP 1 Score: 306 bits (785), Expect = 8.720e-93
Identity = 186/461 (40.35%), Postives = 257/461 (55.75%), Query Frame = 1 
Query:  298 VKVFPNGEHEGGKSFTVSPADVEGLEDLGEWLGPKMECVSQGMRRDEPQYCKVFNSVGVRVPSMASVEDGETLYVVPQNRNFVWPTVKIGRKVTVPHVKTPL-GAEVVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLE--SAEGHDFKSEGLG-TNRFATVVLYFNDVKEGGETVFTHAPGIDHHL--VPDTKVPVREVLENLDLPRGGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGLSSVDPETGRTVDQASGVNKAGNNIVPDPTFQQVQAAFLNEDVEGASLWFDGKQLWMDRDWRV---GET-FKINTFLTHRWVVKVN-----GAEVKTWLV-SERTKD 1632
            V +  NGE     S  + P     +E+L   +G  ++    G        C+VF+  G  + ++ ++ D + L+ VP NR+FVWP  +IG +V VP V + L G  + LETLS SPRVF + NF+  E+AD +IE  LG+T   + LKRS+TGT+G  +S  RTS+NAF T +  A  LKRR+F LLG+      W DGLQVLRYN S+AY+ H DYLE  S   H+F S   G TNRFATV+LY  DV+EGGETVF     ++       + +   R      DL  G WEE++   C   + V P++G+AVLFY+Q+PDG  D  S HGACPV++G KWAANLWVWNGPR+G S+  P       +A G               ++QA F +  VEG +L+      W    W     GE   K  T+  H+W V+ +     GA + +W + +E+ +D
Sbjct:    3 VLIHDNGESTPAGSLYLEPKTTTSIEELKSAVGLVIDACHGGT-------CRVFDRYGYEIKALGALHDEQLLFAVPPNRHFVWPAFEIGHRVAVPGVTSSLPGHPIFLETLSDSPRVFLVENFLSAEDADEVIETTLGITAAGFALKRSTTGTQGAVVSSHRTSENAFDTTSPVAMKLKRRVFDLLGMR-----W-DGLQVLRYNASKAYIPHMDYLEFDSNADHNFDSASPGGTNRFATVLLYLTDVEEGGETVFPLGEPLEKETRTTQEIQAEARARGRAADLTPGSWEEEMTETCISRLAVKPQKGRAVLFYSQNPDGTPDERSLHGACPVVKGVKWAANLWVWNGPRFGHSATSP-----AKEAEG---------------KIQAVFSSA-VEGVALY------WETTRWGKMGPGEAELKAMTYQGHKWNVRRDEGEEQGAVLASWTIEAEKAED 423
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Match: A0A7S2SRF8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRF8_9STRA)

HSP 1 Score: 301 bits (770), Expect = 2.400e-89
Identity = 182/479 (38.00%), Postives = 265/479 (55.32%), Query Frame = 1 
Query:  304 VFPNGEHEGGKSFTVSPADVEGLEDLGEWLGPKMECVSQGMRRDEPQYCKVFNSVGVRVPSMASVEDGETLYVVPQNRNFVWPTVKIGRKVTVPHVKTPL--GAEVVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSSTGTKGK-AISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLE-SAEGHDFKSEGLGTNRFATVVLYFNDVKEGGETVFTHAPGIDH-----------HLVPDTKVPVREVLEN--LDL-PRGGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGLSSVDPETGRTVDQASGVNKA--------GNNIVPDPTFQQVQAAFLNEDVEGASLWFDGKQLWMDRDWRVGETFKINTFLTHRWVVKVNGAEVKTWLVSERTKDQSFVLSKASL 1662
            +F NG  E G S  V         DL  W   ++     GM       C +++    R+     ++  ++++VVP  R FV+PT ++GR V +  +++P   G  + LETLS SPRVF L NF+  EE+D ++ +AL  T     L+RS+TG + + + +K RTS+NAF   ++ A+ LK R   +LG+  Y E   DGLQVLRYN S AY++H DYL+ +  GHD+ S   G+NRFATV+ Y +DV+EGGET+F     +D              VP       E++ N  +DL   G WE ++L+QC+  + V PK+  AVLFY+QHPDG  D +S HGACPVI G KWAANLW+WN  R G      + G     +S             G+    +P   Q +A+F N+DV GASL+++    W   D+  G++  +NTF  H W V+V    V  W+++E   DQ ++LS+A+L
Sbjct:   67 LFENGRLEDGTSVLVPSTACR---DLSGWAAGQL-----GM--SNCSQCTLYDQSAGRITQCDQLQPNQSVWVVPPERWFVFPTGELGRTVELRRMRSPRKEGHAITLETLSQSPRVFRLNNFLTDEESDELVANALADTDPVTSLQRSTTGAEHQVSFNKVRTSENAFDGSSRLARILKERAVDVLGMLPYDEEITDGLQVLRYNVSTAYISHHDYLDDNGGGHDYDSSKDGSNRFATVLFYLSDVEEGGETLFPQGQAVDEGEPNAFGSVTVRDVPPEDHIKAELIANGTMDLFEPGRWERRMLIQCKTRLAVKPKKATAVLFYSQHPDGTLDKASLHGACPVIRGTKWAANLWIWNKVRLGYQRAPRKKGAGRFDSSXXXXXXXXXXXXXGDEAPKEPPVGQPKASFFNKDVIGASLFYEDT-FW--DDFPPGKSIGVNTFKGHGWNVRVQEKNVLRWVITEEL-DQKYILSQANL 531
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Match: A0A7S4RCI9_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RCI9_9STRA)

HSP 1 Score: 285 bits (730), Expect = 1.070e-82
Identity = 161/393 (40.97%), Postives = 221/393 (56.23%), Query Frame = 1 
Query:  514 LYVVPQNRNFVWPTVKIGRKVTVPHVKTPLGAEVVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLES---AEGHDFKSEGLGTNRFATVVLYFNDVKE--GGETVFTHAPGIDHHLVPDTKVPVREVLENLD-------LPRGGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGL--SSVDPETGRTVDQASGVNKAGNNIVPDPT-FQQVQAAFLNED----VEGASLWFDGKQLWMDRDWRVGETFKINTFLTHRWVVKVNGAEVKTWLVSERTKDQ 1635
            +Y VP  R F++    +G    +PHVK   G  V L+ +S +PRVF + NF D +E+  I+E AL  T E +R+KRSSTG  G  ++  RTS+N F TH K AQ +KRR   +LG + Y E+  DGLQVLRYN++ AY+ H D+++     E H+F S G+G+NRFAT++LY +D+ E  GGETVF     +   +  + +V + E L  L        L +G W+E ++ QCR  + V P   +AVLFY+QHPDG  D SS+HG CPV+ G+KWAANLWVWNGPR G   S V+ E          V K     + DP   QQ+ A F N       E ASL+F  +  W        E  ++NT+  H W V V    ++TW V      +
Sbjct:  224 IYAVPAGRLFIFAPKYVGEIFDLPHVKVSSGLPVSLKVISITPRVFDVINFFDRDESSRIVEKALKETSETHRMKRSSTGASGYNVNSQRTSENGFDTHGKEAQKVKRRCLDVLGFDHYEESMTDGLQVLRYNKTTAYIPHMDWIDDHYKREEHNFDSAGVGSNRFATILLYMSDLDENDGGETVFKEGWPVGQPV--EERVQIDEALRTLRESGDADMLEQGSWQETMVAQCRSRLAVRPNSARAVLFYSQHPDGSPDESSKHGGCPVLHGEKWAANLWVWNGPRNGFPGSPVNEEV---------VRKRKEKGISDPNQLQQINAVFKNTGRDPRFEKASLYFQ-ETFWGPLGHNDPE-LRVNTYQGHVWNVMVGVEVLQTWTVGSEESQR 603
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Match: A0A7S2UFR0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFR0_9STRA)

HSP 1 Score: 284 bits (727), Expect = 5.290e-82
Identity = 157/390 (40.26%), Postives = 230/390 (58.97%), Query Frame = 1 
Query:  514 LYVVPQNRNFVWPTVKIGRKVTVPHVKTPLGAEVVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLESAEG---HDFKSEGLGTNRFATVVLYFNDVKEG--GETVFTHA-PGIDHHLVPDTKVPVREVLENLD---LPRGGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGLSSVDPETGRTVDQASGVNKAGNNIVPDPTF-QQVQAAFLNEDVEGASLWFDGKQL-WMDRDWR---VGETFKINTFLTHRWVVKVNGAEVKTWLVSERTKDQSF 1641
            LY VP  R +++    +G    + HVK P    V LE +S  PRVF + NF D  E+D ++  AL  T E++R+KRSSTG  G  ++  RTS+N F TH+K A  +K+R F++LG +EY++  +DGLQVLRYN++ AY+ H D++E   G   H++ S G+G+NRFAT++LY  D+ EG  GETVFT   P        +  V ++++  + D   L +G W+EK++ QCR  + V P   +AVLFY+Q+P+G  D  S HG CPV++ +KWAANLWVWN PR G        G  V++        NN+  DPT  QQ+ A F N  ++ A   F    L + D  W     G+T  +NT+  H+W + V+G +VK  +V +   +QS+
Sbjct:  250 LYAVPAGRVYMFAPKFVGEVFELKHVKLPGNLPVRLEVMSLKPRVFDVINFFDRSESDAVVNTALKETSESHRIKRSSTGASGYNVNSQRTSENGFDTHSKNAMTIKKRSFEVLGFDEYNDGHSDGLQVLRYNKTTAYIPHLDFIEDPTGKEEHNYDSAGVGSNRFATILLYMTDLSEGDGGETVFTDTWPNQPPEKNIEIDVALKQLRNSGDASMLEQGSWQEKMVAQCRTKLAVIPHSARAVLFYSQYPNGEPDKDSLHGGCPVLKKEKWAANLWVWNAPRGGFP------GAPVNEDVVAQNRENNVAADPTGPQQLHATFSNTGIDPA---FATASLNFQDTFWGNLGTGDTLSVNTYEGHKWNIMVDG-KVKRTIVIDTEPNQSY 629
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Match: A0A7S1D9T3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9T3_CYCTE)

HSP 1 Score: 278 bits (711), Expect = 1.050e-80
Identity = 157/408 (38.48%), Postives = 229/408 (56.13%), Query Frame = 1 
Query:  481 PSMASVEDGET---------LYVVPQNRNFVWPTVKIGRKVTVPHVKTPLGAEVVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLESAEG---HDFKSEGLGTNRFATVVLYFNDVKE--GGETVFTHAPGIDHHLVPDTKVPVREVLENLD-------LPRGGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGLSSVDPETGRTVDQASGVNKAGNNIVPDPTFQQVQAAFLNEDVEGA----SLWFDGKQLWMDRDWRVGE---TFKINTFLTHRWVVKVNGAEVKTWLVSE 1620
            P+  S +D ET          Y VP  R F+     +G    + HV   LG  + LE LS SPRVF ++NF    E+D++++ AL  T E +R+KRS+TG     ++K RTS++ F T+ +TA A+KRR F+ LG++EY E  +DGLQ+LRYN + AY+ H DY++       H++ S G G NRF T++LY +D+ E  GGETVFT A  +      D  VP  + L+ L        L  G WEE ++ +CR  + + PK G+AVLFY+QHP+G +D SS HG CPV++G+KWAANLW WN  R G +      G  V++     +   +  P   ++Q +A FLNE  + A     L+F   Q W     ++G       +NT+  H WV+KV G  ++ W + +
Sbjct:  135 PTCVSNDDEETCTAMVSQAHFYAVPAGRIFMLAPKFVGEVFKLDHVHGALGKPISLEVLSVSPRVFDVHNFFSKTESDDLVKRALAETSETHRIKRSTTGAGSTHVNKQRTSESGFDTNGRTALAVKRRCFETLGMDEYIEGHSDGLQILRYNLTTAYIPHMDYIDDPHRRLRHNYDSYGQGGNRFGTILLYMSDLDEDAGGETVFTEAWPVGQS--EDEHVPFEQALQALRDSGDADMLKPGSWEETMVAKCRSRLAIRPKAGRAVLFYSQHPNGAEDASSLHGGCPVLKGEKWAANLWFWNTIRDGFA------GNPVNEHVVAKEKSQSSSPSTQYEQKKATFLNEGKDPAMAEAELFFQENQFWA----KLGHGDPAAHVNTYEGHIWVLKVGGKVIRKWRIGK 530
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Match: A0A7S1FZA1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZA1_9STRA)

HSP 1 Score: 283 bits (724), Expect = 1.350e-80
Identity = 155/381 (40.68%), Postives = 223/381 (58.53%), Query Frame = 1 
Query:  514 LYVVPQNRNFVWPTVKIGRKVTVPHVKTPLGAEVVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSSTGTKGKAISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQVLRYNESQAYVAHFDYLES---AEGHDFKSEGLGTNRFATVVLYFNDVKE--GGETVFTHAPGIDHHLVPDTKVPVREVLENLD-------LPRGGWEEKLLLQCRRHMVVAPKRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGLSSVDPETGRTVDQA--SGVNKAGNNIVPDPTFQQVQAAFLNEDVEGASLWFDGKQLWMDRDWRVGETFKINTFLTHRWVVKVNGAEVKTWLV 1614
            LY VP  R+F++    +G    + H++  L A + L  LS SPR+F ++ F + EEAD+I++ AL  T E +RLKRSSTG  G  ++ TRTSDNAF TH+ TA  +K R F++LGI EY +  +DGLQVLRYN S AYV H D+++    ++  + +S  +GTNRFAT++LY  D+ E  GGETVFT    I   +  D ++ + + L  +          +  W+EK++ +C   +   P R ++VLFY+QHP+G  D SS+HG CPV+EG+KWAANLWVWNGPRYG  +   +TG+  ++     V     N   +P F+  +  + N      + W D +          G    +NTF  HRW VKV    VKTW++
Sbjct:  356 LYAVPVGRHFMFAAAYVGEVFHLDHIEQVLRAPMSLTALSLSPRIFEVHEFFNQEEADDIVQRALTETSETHRLKRSSTGRSGYNVNPTRTSDNAFDTHSHTAMTIKERCFKMLGIFEYEDEVSDGLQVLRYNISTAYVDHMDWIDDYQRSQKANMESWAIGTNRFATILLYMTDLPEAGGGETVFTEGWPIGQSV--DDRISLSQSLAMVKEKGLTKLFQKDSWQEKMVAKCNSRLTFRPGRAKSVLFYSQHPNGEPDKSSQHGGCPVLEGEKWAANLWVWNGPRYGPHAPTFDTGQDENEGLDHAVTATFRNSGKNPAFKSAKLFYEN------TYWGDLEP--------GGSGHGVNTFHGHRWNVKVGEDIVKTWVI 720
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1220.1853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE8_ECTSI0.000e+095.50Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A835YK64_9STRA9.870e-13546.22Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2V4E4_9STRA2.490e-10141.76Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TKQ8_9STRA1.210e-10041.11Prolyl 4-hydroxylase, alpha subunit n=1 Tax=Nannoc... [more]
A0A4D9CQP1_9STRA8.720e-9340.35Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2SRF8_9STRA2.400e-8938.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4RCI9_9STRA1.070e-8240.97Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S2UFR0_9STRA5.290e-8240.26Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1D9T3_CYCTE1.050e-8038.48Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1FZA1_9STRA1.350e-8040.68Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1220contigEcto-sp13_S_contig1220:7368..18289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1078.9
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LFE8
Model size2393
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
Ec32 ortholog descriptionProlyl 4-hydroxylase, alpha subunit
Ec32 orthologEc-07_006010.1
Cds size1668
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1220.1853.1prot_Ecto-sp13_S_contig1220.1853.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1220 8093..18289 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.4506035-UTR-Ecto-sp13_S_contig1220:7367..80921681462648.4506035-UTR-Ecto-sp13_S_contig1220:7367..8092Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1220 7368..8092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.4634805-CDS-Ecto-sp13_S_contig1220:8092..82241681462648.4634805-CDS-Ecto-sp13_S_contig1220:8092..8224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 8093..8224 -
1681462648.4735065-CDS-Ecto-sp13_S_contig1220:9041..91401681462648.4735065-CDS-Ecto-sp13_S_contig1220:9041..9140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 9042..9140 -
1681462648.4828649-CDS-Ecto-sp13_S_contig1220:10005..101851681462648.4828649-CDS-Ecto-sp13_S_contig1220:10005..10185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 10006..10185 -
1681462648.4919946-CDS-Ecto-sp13_S_contig1220:10432..105731681462648.4919946-CDS-Ecto-sp13_S_contig1220:10432..10573Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 10433..10573 -
1681462648.5070384-CDS-Ecto-sp13_S_contig1220:11157..112651681462648.5070384-CDS-Ecto-sp13_S_contig1220:11157..11265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 11158..11265 -
1681462648.5159764-CDS-Ecto-sp13_S_contig1220:11729..118401681462648.5159764-CDS-Ecto-sp13_S_contig1220:11729..11840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 11730..11840 -
1681462648.525381-CDS-Ecto-sp13_S_contig1220:12518..126771681462648.525381-CDS-Ecto-sp13_S_contig1220:12518..12677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 12519..12677 -
1681462648.5348032-CDS-Ecto-sp13_S_contig1220:13637..137711681462648.5348032-CDS-Ecto-sp13_S_contig1220:13637..13771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 13638..13771 -
1681462648.546353-CDS-Ecto-sp13_S_contig1220:14923..150991681462648.546353-CDS-Ecto-sp13_S_contig1220:14923..15099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 14924..15099 -
1681462648.558275-CDS-Ecto-sp13_S_contig1220:15976..161841681462648.558275-CDS-Ecto-sp13_S_contig1220:15976..16184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 15977..16184 -
1681462648.5680633-CDS-Ecto-sp13_S_contig1220:16819..168891681462648.5680633-CDS-Ecto-sp13_S_contig1220:16819..16889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 16820..16889 -
1681462648.5776114-CDS-Ecto-sp13_S_contig1220:18139..182891681462648.5776114-CDS-Ecto-sp13_S_contig1220:18139..18289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1220 18140..18289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1220.1853.1

>prot_Ecto-sp13_S_contig1220.1853.1 ID=prot_Ecto-sp13_S_contig1220.1853.1|Name=mRNA_Ecto-sp13_S_contig1220.1853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=556bp
MAKATTKTPPAKKNVPKKDPAANPAFKWQMGGLIAGIIVALASTTEPGRQ
ALRSVGLEDVVLHYTRGKSRSPEAQVEQQPLPEKAVEVIPSVCLTQSCEV
KVFPNGEHEGGKSFTVSPADVEGLEDLGEWLGPKMECVSQGMRRDEPQYC
KVFNSVGVRVPSMASVEDGETLYVVPQNRNFVWPTVKIGRKVTVPHVKTP
LGAEVVLETLSHSPRVFSLYNFMDMEEADNIIEDALGMTQEAYRLKRSST
GTKGKAISKTRTSDNAFVTHTKTAQALKRRIFQLLGIEEYHETWADGLQV
LRYNESQAYVAHFDYLESAEGHDFKSEGLGTNRFATVVLYFNDVKEGGET
VFTHAPGIDHHLVPDTKVPVREVLENLDLPRGGWEEKLLLQCRRHMVVAP
KRGQAVLFYNQHPDGRKDLSSEHGACPVIEGQKWAANLWVWNGPRYGLSS
VDPETGRTVDQASGVNKAGNNIVPDPTFQQVQAAFLNEDVEGASLWFDGK
QLWMDRDWRVGETFKINTFLTHRWVVKVNGAEVKTWLVSERTKDQSFVLS
KASLA*
back to top

mRNA from alignment at Ecto-sp13_S_contig1220:7368..18289-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1220.1853.1 ID=mRNA_Ecto-sp13_S_contig1220.1853.1|Name=mRNA_Ecto-sp13_S_contig1220.1853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=10922bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1220:7368..18289- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAGGCTACCACGAAGACGCCGCCCGCGAAGAAAAATGTGCCCAA
GAAAGATCCCGCTGCCAATCCCGCGTTCAAGTGGCAGATGGGGGGGCTGA
TCGCGGGCATCATCGTGGCTCTCGCTTCGACGACTGAACCAGGGAGACAG
GTGAGCCAAGCAGCGTGCGTACCGACCGCTGCTCCTCTCCCCTCTTGATC
TGGCAGGTGCGCCGTTTGCCAGGAACTGCAGAGAGCACACGTCTTGTATC
GTCATGGTGCATGCGACGATCGAGCAGGCTCGCTTTGAATCAAGCACGGA
CGGTGGCTCTCTGTCTCTTGCAGCCATACGACATACCCAGAACAGGAACC
GGAGTAACTTGCGAGCGGACTAAATATTGAAGTGAAGGAGAACACAGCAC
ACCCTTCACCAGGATTCTTGTGCCATTGACAACACACCTTGACATCCAGC
CCGACCGTGGTCGGTAATGTTGCCGGCGCCATCATGAACACGCGATGAAC
TCAAGTGATTGCAATGCCGTGGGTTGGCTGGCCCAGTCGTTCCTTGGTTT
GTGTGATACATCGGCGAGTACCTGAGGTTGGAAAAATTCACATATTCTAC
GGGTGTGAGATAGCGGTAATTAGGCCGCTTTCGTTGCCGCTGCATTTACC
TCCTGGACCCTTGTTTCGGTCAATACTTCGTGCAGCTTAACCGCTTGTAA
GGCCTTCGTGCACAAACCGGAGCAGCTGTTTGCGAATCGGGGGGTTCAGG
TTAGCCTAGCGCTTCAGAGTACCAAGAGGTGTACGGTTCCCAAGATGCGG
TATACCCGACGGTCCGTCCAACGAAGAACTCAGTGATCACACTCACTTCG
CTGACGCAAACTATGAGACGGATGTCTCCAGGTTCGCGTGTGGGGAAGTT
TCCTTGGGGATGTGTGGTGTGGATACACACCGGTTCAACCCCTTGTGGGA
GAGGCTGAAAAGTACGGATAGTTGTGTTGTGAGTCAGGGGAGAGCGAGCC
CGCTGCAGCAGAGTTCAGCGTCCATCATGCACTGACTCTATCTGTAGTAA
CACCCCGACGGTAGATCTCCGACAGGCCATCTGACGTCAAAATCTACGAC
TGTCTGAGGTGACATTCACATGTGACAGTTTTCCTACTCATGATTGCTTT
GTGGAGTGTGGACATATGAATGACCAACGAGCATGGGCCATCGACCGTGT
CTGCTATGCGAATGCAATTGCTGCAGTCGTGGGGGCGGGGGTGGTGGGGG
GCGCACTGCTGGCTGCGCCACCATCATGCGGCCCCCTTCGCGACAAGTGC
GCCCGCGCGTGACTCGCGCGCCGCCGCTCCTTGTGCTTGCGCTGATGGTT
TCCTTGCTCACGTTGAATATGACCCGCACGATGCTGCCCTCCGCGTGTAG
GCGCTGAGGTCGGTTGGTCTGGAGGATGTGGTTCTCCACTACACAAGGGG
AAAGTCACGCTCGCCCGAAGGTATGTCGTCGCTTACTGTACTTGAGGGCA
TCCCGAGATTTAGCCATGTCCCAAGAGCTTAAATTTAGGTTCGGTAGTTG
CCCAGTTTCTTCCCCCGGGATTTCAGTTGACGCGCCAAAGTTGGTTTCAA
ACCAGTCCGTATTTACCACGACACGAATCACCATCTGCACTATTTTGATC
ACCACGCGTCGCCGCGTTCTTGGCCTCATCGCTACCTACGGTCGTGGGCC
CTCTATAAGGGAGAGGTACTTGGGAAGGGCGCGTGCCCGTTCTTACGTCG
GGTGAATTATTTCGTCTGTTGGCACCGATAGAATATACGGACTGTGTATG
AAATATAATTATTTTTTATTTTTTTATTTATTCACATATGGCGGGTGCTG
GCTTTGAGGTAGGGTGAAGTATTGTCTCCTGAGTATGAATGTGAAGTACT
GAAGTTTTTTTTTTTTCGGTGTGGAGGGTGCCCGCTAGAAGAGAGGGTGA
ACAAAATCGGCCTGGCACAAAGCCACCCTACGGAGTGCGTGCGACTTGAC
TACTCCAGCCGCCCACGCTGGTGCACTCAAAGCCATCGATCGCCGCGCGT
TGCCACCACACTCACACCACCTCCGCGACGATGTGTTCCGGAAACCTGCG
GGCAGCCCAAGTGGAGCAGCAGCCGCTGCCGGAGAAGGCGGTGGAGGTGA
TCCCCTCGGTGTGCCTCACACAGTCGTGCGAGGTTAAAGTTTTCCCCAAC
GGCGAGCACGAGGGGGGGAAAAGCTTCACGGTGTCCCCGGCGGATGTGGA
GGGCCTGGAAGACCTCGGGGAGTGGCTAGGGCCTAAGATGGAATGCGTTA
GCCAGGGGATGAGGTGAGGCGCATGGGGGGGGGGGGCGTTCTCGAGCAGC
GGTGGGTGCGTGGGTGGGTGCCAGAAATGCGGGGCGTGGTCAAGGGATGC
CTTGGGGCTCGCCAGAGGTACTTGTTTTGCTCGTTTTTTTGTTGCGCGGA
GAGCCGCGGGGTTTTCGTGCACAATACGAGTCCAGACGTGTGTAATGATT
GATGGTATAGAACGTCATTTTTGTGTGTGATCGATACCCCTCCATCTACG
GGTCGCCCGTGAGTGTCAGTGACGTACGCTTTCGACGGGTCGTACGCGAC
CGATGTTGCAGTTGTTGTTTTAGCAGAGCACTTGTGAGAAGGTTCTGAAT
CCCCCAAATGTTTTTTTTTGTCAGGGGGTATGATACGGTGCGACGCTCGC
CCAGTACCTCCCGGGTGCAGGTGTCATCCCATGACACAATGGGTTTAACG
GGACTGTGCTATTCGAGGCATTTTTGCTCTCTTGTTGTTTGTTGTCGTTT
GTCTCCGTTCTGCAGACTTTTTCTCGGCTCGCCAATGGAGTTTTTTGTTG
TCCCTTTGCCCCGCACTACAGGGGCCCCGTAGCCACACGTTCGTGGTATC
TCCCGCTAGTTGTGCGTGGTTTCGTCCTATTTATTATTGCGACAGTGCCC
CCGTTTTTCGTGGTGAGACGTGTACTAAATTTACTATTTTCAGTGTATTG
TTTCTAGTAGTGGACGGATATTTGGACGTCATCGCTCTTTCTCCCTCTCT
CTCTCTTGCTACTCCTCTCTCTCTCTCGTTCTCCCGCTCTCCGTCCCTCT
CTGTCCCTCTCTCACTCTCCCCTCCCCCCCCCCTCTCTCTCCCTCTTTTC
TATTTCTGCATGCGATTAACAACGACCCCCCGTCCCGCAGGAGAGACGAG
CCGCAATACTGTAAGGTTTTTAACAGCGTGGGAGTGCGCGTTCCCTCCAT
GGCCTCCGTGGAAGACGGCGAGACGCTCTACGTGGTCCCGCAAAACCGGA
ACTTCGTGTGGCCGACCGTCAAGATCGGTCGGAAGGTGACGGTGCCGCAC
GTCAAGACCCCGCTGGGTAAGTCACACACTCAAGCACGCGCACGTATCGT
TTACGTGCTCTCTTCGTCGCACCCTCTCGTTCCTTCCTCTCTTTTCCCTC
AACTCTCCGCCCCTCCATTCTCCTGTCGCCCCCCAACTGCCCCCCCGCCC
CCATGTGGCCGGTTTTGTTGTTGTTGTTGTTGTTGTTGTTATCGCTGGCA
CTGGTGTCTTTGGCATATGCTCTCTGCATGCTAGCAGCCGTGCCGGTAAG
TCCGACTGACGTTGACCTCTTGCGTGGTTTATTGGCTGTCTGCCACGAGT
TCGTGTTTGATGTGGCATGGAAATCAAAGAGAAAAGACCGAGAAAATTCA
ACGCGGAATAGGATCTTCACGGTAGTACTCGTTGCTCCGACCTTATCCAG
AAGAGGTCACTTGTATTTGTCGGCGCCTGGATTGTCTTGCTGGGAACCAT
CCGCATGACTGTCTACTGTTCTTCGCTCAAGGTCCGAGGTTGTTACTGAG
ATCGCTGTAAACCCCCGACGCAAAGAGTCCTTGGCTTCACTCCCCACCCG
CCGCTTAGGATGTTTACCACAGCACGAAATGACCCGCTACTTGCCGGCGT
TAGGGCTGCGTTGTGGACCCATTGTCTGGCCGTTATTGTATGACGTCCCC
AAACCCTTGCCCTGCGCCCGACGCGATCTAAACAACCGAACATTTCCCCA
ATAAAAGCGCTCTGCTCCTTGGTCTAAAGGCGGAAATTCATCACAGACCC
TAGTTCCCGGTCATGTTGATGGGAGGCCTGGCACCAACCGCAGTCTTATG
CAGTCGCCCCTCGGTAGGGACATCCAAGATTTTTCGTTAAAACAGGCGCC
CTTGGGCGAGGGGGTATCCCTAAGATTGTTACCCCTCATTCTGTTGTACA
TTCTGCTGGGCACCATTCCTGTGATTAAAAAGTTGTCCTTAACCGGGGGC
TCTCCTCAACAACGGTGTTCTTAACCGAGGAACAAGACCTGCCATCCTTT
ATTGCACCGTTGAGCCCGTTCTTTGACCCCAGTGCCTACCGTAGGTGACA
CGAGATATCACACACCCTGGATCGATTTTGAAAGCTACCTCTTCTCTCTA
GCCGCAAACGCTGAACCTTTCGCCGTCCCTGGCGTCCTACGAACAACCTA
CGCACCTTGTGGTTGCAGGCGCCGAGGTTGTTTTGGAGACCCTGTCACAC
TCCCCTCGAGTGTTCTCCTTGTACAACTTCATGGATATGGAGGAGGCCGA
CAACATCATTGAGGACGCCCTGGGCATGACGCAGGAGGCCTACCGTCTCA
AGGTCTGTTGTTCTGCTGTGGCGACAAGCTCCCCGCCGCCGCCGCTACCG
TCGTCGTGACTGTCGTCTACATTTCGTTTTGGCGTCGTTGTTTCGGCGTT
ACGGGCAACATTTCTGTATTCTGTTCCGTTGGTTCTTGTTGCTGTAGATG
CACGTGGGCGGGTAGAGAGACAGAGAGAGATGTAGCCTTTTAACTCGGAG
GACGTGTTTCTGGGTTTTTCTTATGTTACGGCGTTCTTCCTCATCTTGCC
CCCCTCAGACTATGTAGGAAGACCTTCTTTTCCGCATCTGTTCTGGCACC
ACCTCGTCTTATACACGCCAAGGGAGACGAAGAAGATGCATGCACATATA
CACCCCAAGGATCCCCTTTTTTGCGTCCACCTGACGGTTTTTTGCTTCAT
CACTTCCCAGACTGACACATCAAGACATACACTACTCCCCCAAATTGTGT
ACAGACTGGCGCCAATCAGATGGCGCCGAAAACACACACGTTACCTGTCG
GCCTTGAGGTGGGGCTGGCTGGCTCCGCTTCGTTTTTTTGCCGGGTCAGC
CGATCGCTATCCCCCTCCCCTTCCGCGTTTCTTTTCATGTGTCCAACTTC
GGCAAACCTAAACGTCAATCTCCTCTTGGAAACGTTGTTCGCCTGTCTTG
TGCACGCTTTGGCAAAATTGCTTTCACGTCACCCTTCCACGAAAGCTCAC
TCTTCATGAAACTTCGAACCAGGTTTGTACGAAACAAATATGTACGTTTT
TTGTTTTCGATTTTTCTCTACTGCTAAGAAGCGACAATTGTAGATGGTCC
TCCCCGCACGTGTTTTCTCTTCTTTCTTTGAAATACCCACACACTCTTGT
TGTCAATTCTCCTTCCCTCGTTTTGTTTCTCCTTGTTCGCCTATTTACTT
GAAACGCCCACTCCCACACACACATGAACGCACACCGCTTGCTCGCTCGC
TCGCTCGAACAGCGGTCGTCGACGGGCACGAAGGGCAAGGCCATCAGCAA
GACCCGCACCAGCGACAACGCCTTCGTCACGCACACCAAGACCGCTCAGG
CCCTGAAGCGACGCATCTTCCAACTGCTGGGGATCGAGGAGTACCACGAG
ACCTGGGCTGACGGGCTTCAGGTTTGTCGAAACGAAAGCGCGGAGGTTGA
CAATGTACTAACACGCATGTGTTGGACATTTCGAGGACCTCTGTGTATCG
CGATAAGTATACAGTCGACTCTGTTTGAACGCTGTGTGAACGCAGGGAGG
CTGAATAGATTACGTTGATGCTTGAGACCTCGAACCTGTCTGTGTCACGA
TAATTGTAAACACCCCTTGTAGGTCTTACTGTCCTTCATGGCCGTGAGAT
TTTTCTGTCGTTCCGTCACCGCCTTCTCGCCAAATTGATCACTGCCAAAA
GAACTTACTCTGGGGCTACGGCTTCCTCTTTTTTTAAGCCAATGTACTCT
TGACGCGTACCTTGCACCTCCGGCCCACCCTAAACCACCTTCCACTTTTC
CTCAAGTGCCGACACTTCTCCCCTCTTGACGCAACGCTTGGATTGTCTTT
TTCGAGTGTTGCTTTGCTCACCTGAAGTGCGGCCCACTGCCTTTCATAAA
GTTTTTCCGCTGCTGCCACCAATTCACGTTTGAGGTGGTTACTCTGCCTG
CTGATCCTTCCTTGCCCTTTTGTTTCCCCGTTTTCCCACCACCTGCCACG
GCGGTAACAATTGCAATGGATCTGTGTGATTGACGTGCGTATGTCACCTG
CGTCCTGCTGTTTTTGTTTTCCCACGTGTCACCTTAAACACATGCGAAGG
TGCTGCGGTACAACGAGAGCCAGGCGTACGTCGCCCACTTCGACTACCTC
GAGAGCGCTGAGGGGCACGACTTCAAGTCGGAAGGGCTCGGAACCAACAG
GTTCGCCACGGTGAGACACCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTCTCTTGTTCTTATTCTTGTTCTTGTTCTTGTTCTTGTTCTT
CTTTTTCTTCGTTCTCGGTCTTGTTTTTGATTCGACGTCGCAACCGCGTC
GTGTTTTACCGTTGTGGATTTACGTCTTGATTTTTCGGAACAAGTTTTCT
TGAGGATAAGGTAGAGTTCGGTAAGGTTGGCAACCGTCGGCTCGTGTGCG
GAAGTGTGCCCTGAAGTTTATGAACTGGATTATATCAAACAAGCCTGAGC
TGCGGGCTTTACAACGCCCCCGCGCCTCTCTGTCTGTGTGTCTGTGTGTC
TGTGTGTCTGTGTGTCTGTGTGTGTCTATCTGTCTGCCTTCTGTCTGTCT
CCTTTTCTGTCTGACCGTCCGGCTTTCTGTCTCCTGTTTCTTATCTCCGA
TTCTGCCTCTCCGTTGGGTGTTAGGTGGTGCTGTACTTCAACGATGTGAA
AGAGGGAGGAGAGACGGTCTTCACGCACGCCCCGGGCATCGACCACCACC
TCGTGCCAGACACAAAGGTTCCCGTTCGAGAGGTGGGAAAAAAAAAGGAG
AGATGGAGACACACACGAACAGAGAGAGACAGGGAGACAGAAAGAGAGAT
AGAGAGAGAAAGCGAAAGAGAGACCGAGAGAGAGACAGAGAAAGAGAGAA
CCAGAGAGAAAGAGACCTTGAGAGAGAACGTGTTCATTGCACAAGTGGTT
TTGCAGCCGGGAAGGGATGTGTGTCGTCACACACAGCTGCCATTGGCTTA
CCCTTCCCCCGTTCCTTATCCCCCAACGACATGTGTCCAGTTTATCAGCA
AATCACCAATCACGTAGTTCATTCGAAGGAAACTACATCCCAGGGGCTGT
TCTCTCCCGCTGCCCCCCTAGTCCCGGCAATAAGTTAAACATGTGCGGGA
ATAGAAAAGGGAGGGGGTACACAGACCCTATTCCCTAACCCAACTTCCCC
GATTGTATGCTTTACCCAACATGTCTGCTAGACAGAAAAACCATGCGAAG
CCTCTGAATCCTCTTGCGTGCACACCGTTCAGCTCATATTGCCCAGATTG
GGGTCGTGTTTTCACCGGTAGGGCTGCTTTTCCCCCCCCCTCTCCCTCCT
GTGGCGCGAACGCCAGGTGCTTGAGAACCTTGACCTTCCGCGGGGCGGTT
GGGAGGAGAAGCTCTTGCTGCAGTGCCGACGGCACATGGTAGTGGCACCC
AAGAGAGGTCAGGCAGTGCTGTTCTACAACCAGCACCCGGATGGGAGGAA
AGATCTGGTGAGTTTTTTCTTTCCTCTTTCGTTTCGCTTTTCTCTCTTTT
TTGTGTTTTGTGGATGTGAGTCGCCTCGCCGGTCGGTATGCATAGGACGG
GTAGCCGCGTTTCCCGATCTCCCGCCGGGCGTGTTTCGTGCCTTCCAGGA
CAGAAAAAGTTCCGAGAATCACAAACCCAAACCAACGTTCACTGGTACCG
CCCGTACACGGCGTGCTCTTTCTCCGGTTGCCGCCCCTCTCCACGATCGT
CCAGTCCAGCGAGCACGGTGCTTGCCCGGTGATCGAGGGCCAGAAGTGGG
CCGCCAACCTCTGGGTGTGGAACGGTCCTAGGTACGGTCTCTCGAGCGTC
GACCCTGAGACCGGGCGGACTGTGGACCAGGCTTCGGGGGTGAACAAGGC
GGGCAACAACATCGTGCCCGACCCCACCTTCCAGGTGATTTGAGTTGTTC
CCCTTCGTAAGCTTTCACCCTACGGGACACCTGGACACATGTTCCAGGTG
AATTTATAGTGATGTCTTAACTCGTGCCCGTGAACAGCATTAACCATACA
GTAGTCCCGGCAGATTTTTCGGTGTAAGCAAGCATACTGGATAAGGTAAA
GAATCGACTGAGTTGGGGTTGGGGTTAGGGTTATCGACCGCGTCTTCCGG
CCGAAATAAGTTGATCTTGAATCCCGCCTCATGTCTTGACCCTAACCCCC
CCATGTTTCAGGTGAATGAAGTTTGCCCGAACTTCCTCTTTGGCCTAAAT
TTGCGCGTGACTTATATTTGTGAATTCTAAGCTGACGATTTTGTCCAGGG
ACCTCTAGCGGTTTGTTTTTCCTCATTGCGAGCCAAAGGTTGTATGTATT
TGCGATCTGTGCAAGCTTAGGCCGCCCAGCCCCATCCTTGTGCTCGATGC
ATGTCATGGCTGTTTGGATTTACAACGGTTGAGTCTATGATCACAATATT
CGCAAGTCGGGGCAGCAGTGATGACACTGCAAAACGAATTCGTCAACGCT
TTCGTTTGAAGTACTACGAACGGCGTGTTGTGTTGTTTTTTAATGCCAGC
CAGAGGCGTTTCCCTCCAGATTGTCCTCTTGCTGAACCGACTCTTCTCCG
CCCCAGCGTGTGAGCGTGCGCACCAAGTTGGCGTGCTACATGTTGCGACT
CCCCCTCCACATCGTCGTTGCTGTTTTTTCGTCGATTCTTCTCATCGACT
ACAGCAAAATGTATTGCTACGCAAATCGACAAAGAGGTGTGAAGTCTATC
TTTTTTTTTTTTTCGGAATCCGCGATCGATGAACCAATAAAATCGGGAGC
AGGTGCAGGCAGCGTTTCTGAACGAGGATGTCGAGGGGGCGTCCCTGTGG
TTCGACGGGAAGCAGCTGTGGATGGACAGGGACTGGAGGGTCGGAGAGGT
TAGTCGTTCGTGTCCTGTTGTTGCAGTTTATAAAGTTCATAGCTAAATCT
ATCTGGCATGTGGCGCTTGGTCGGAAACGGGTAGTCTTCTGGCCAGACTG
GACGATTGAACTCATCGCAATCTACATAGTATGTGGCGCGTGCCTAGAAA
CGGGCAATCTTATCGTAGGGCGAAACGGTTAGACTCATCGCAAACTATAT
GGTACGTGGCGCGTGGTCGCAAACGGGCCATCTCGTAGAACGGCTTAACG
ATTTGAAAGCGATCGCGCTGGGCCACCTTAGGAAACCTATCCTTCGTAGA
TGCGGTCTCCATCTCCGTGTTCACGGCGATTTATCTTTTCACCGACCTTT
CCCTGATAGATGCTCCTGCAGGCTTTTCCTCAGCATCAACGCGAAAACAC
TTGAGTGAATCGCGCGCGCCCACGCCTGCCTGCTGGAGACGTCGAGAAGC
GTGGCCCATGTCGCAATTTCAAGCTGCAGTCTTGTCGCCTAGACCGCACG
TATTGCTCCAGCAGTGGGCCAGCATGTCCTTGGAACGTGATGACGGGCGT
TTTGCCTCCCACCAGACCACCCGGTCGCGGACCCAACTCGAGCACTCTTT
CTTCCATTTCGGCAATGAGAGCGAGACGCGGGCTGCTGCACGGATGATGG
ATGACTGTCTGTCCGAATCCCTACAGCACGCGATTATATCTTGCACGAAA
TCAATCCACTACCCACTCTTAATCCGCAAGGGTCGACATGTGTGTCTTTC
GTCTTACTTCTCTTATTGGTCCCTGATTCGTCTCTTCCTCCTTGTGTCTG
TTTTTGTTCCTGTAGACGTTCAAGATTAACACCTTCTTGACTCACCGATG
GGTAGTCAAGGTCAACGGCGCCGAGGTGAAGACCTGGCTCGTCAGCGAAA
GAACAAAGGACCAGAGCTTCGTACTCTCGAAGGCGAGCTTGGCGTGACCC
GGTCTATGCTATATGCCAGGAGTCACGCATAGGCGTTCGGAGAGAAAAAA
TACTACGGAGGTCGTCAGATGGCACGGCGGGCACGCAGGGACACTTTCAA
GTGTTGTCATCCGCGCGTAGGGGAATTGTGGACCAGTAGAAGTAGCAGCA
GCGTTGTGTGCATTGCGAGAGAAAGTCTGGGCGTTGCGTCTGTTGTTGCG
ACCTGGAGGAAACAGGGAGAAGCATGACCGACAATAGCGGCCTTTTGTGT
GCATTCCGAGAGCACTGCGAGTACCATGTGGTGTCAACGCCGGGGTAAGG
AGGGCCTTGCCATGCTCATGGGGTGGTATGTATGACGAGCTAGAACGGTA
CGACGGATCATTTGTGCCCTATCCTGCTCGCTTTTTGAGCACACCGAGGA
CGTGTTGATTGACGATGAGGTGACCATGAGGAAATACTGGGGGAGTTTTG
ACCTTCCTAGAACAATGCACCATCACAGCAAACACCAGCCATTGCTGACC
TCAGGTTCGCGTCGCGTTGCACGTGGGTCAGCGTGCCAGCATGACCGGTA
AACGGGCGTCGTGGCCGCGGGACGAGTGGAATATAGCGCGGGAGTGTGTA
TGTAGAGCAAGTGCTTGAATGGGTCGTCCCCTTTTCGTGATCGCCGTTCG
AACACCGGTCGGGGATAGGCTCACCCTGGTTGTACCCTTGTGTTCGTCCG
TGGTTGTTTGTGTCTTAGATCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1220:7368..18289-

>mRNA_Ecto-sp13_S_contig1220.1853.1 ID=mRNA_Ecto-sp13_S_contig1220.1853.1|Name=mRNA_Ecto-sp13_S_contig1220.1853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1220:7368..18289- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAGGCTACCACGAAGACGCCGCCCGCGAAGAAAAATGTGCCCAA
GAAAGATCCCGCTGCCAATCCCGCGTTCAAGTGGCAGATGGGGGGGCTGA
TCGCGGGCATCATCGTGGCTCTCGCTTCGACGACTGAACCAGGGAGACAG
GCGCTGAGGTCGGTTGGTCTGGAGGATGTGGTTCTCCACTACACAAGGGG
AAAGTCACGCTCGCCCGAAGCCCAAGTGGAGCAGCAGCCGCTGCCGGAGA
AGGCGGTGGAGGTGATCCCCTCGGTGTGCCTCACACAGTCGTGCGAGGTT
AAAGTTTTCCCCAACGGCGAGCACGAGGGGGGGAAAAGCTTCACGGTGTC
CCCGGCGGATGTGGAGGGCCTGGAAGACCTCGGGGAGTGGCTAGGGCCTA
AGATGGAATGCGTTAGCCAGGGGATGAGGAGAGACGAGCCGCAATACTGT
AAGGTTTTTAACAGCGTGGGAGTGCGCGTTCCCTCCATGGCCTCCGTGGA
AGACGGCGAGACGCTCTACGTGGTCCCGCAAAACCGGAACTTCGTGTGGC
CGACCGTCAAGATCGGTCGGAAGGTGACGGTGCCGCACGTCAAGACCCCG
CTGGGCGCCGAGGTTGTTTTGGAGACCCTGTCACACTCCCCTCGAGTGTT
CTCCTTGTACAACTTCATGGATATGGAGGAGGCCGACAACATCATTGAGG
ACGCCCTGGGCATGACGCAGGAGGCCTACCGTCTCAAGCGGTCGTCGACG
GGCACGAAGGGCAAGGCCATCAGCAAGACCCGCACCAGCGACAACGCCTT
CGTCACGCACACCAAGACCGCTCAGGCCCTGAAGCGACGCATCTTCCAAC
TGCTGGGGATCGAGGAGTACCACGAGACCTGGGCTGACGGGCTTCAGGTG
CTGCGGTACAACGAGAGCCAGGCGTACGTCGCCCACTTCGACTACCTCGA
GAGCGCTGAGGGGCACGACTTCAAGTCGGAAGGGCTCGGAACCAACAGGT
TCGCCACGGTGGTGCTGTACTTCAACGATGTGAAAGAGGGAGGAGAGACG
GTCTTCACGCACGCCCCGGGCATCGACCACCACCTCGTGCCAGACACAAA
GGTTCCCGTTCGAGAGGTGCTTGAGAACCTTGACCTTCCGCGGGGCGGTT
GGGAGGAGAAGCTCTTGCTGCAGTGCCGACGGCACATGGTAGTGGCACCC
AAGAGAGGTCAGGCAGTGCTGTTCTACAACCAGCACCCGGATGGGAGGAA
AGATCTGTCCAGCGAGCACGGTGCTTGCCCGGTGATCGAGGGCCAGAAGT
GGGCCGCCAACCTCTGGGTGTGGAACGGTCCTAGGTACGGTCTCTCGAGC
GTCGACCCTGAGACCGGGCGGACTGTGGACCAGGCTTCGGGGGTGAACAA
GGCGGGCAACAACATCGTGCCCGACCCCACCTTCCAGCAGGTGCAGGCAG
CGTTTCTGAACGAGGATGTCGAGGGGGCGTCCCTGTGGTTCGACGGGAAG
CAGCTGTGGATGGACAGGGACTGGAGGGTCGGAGAGACGTTCAAGATTAA
CACCTTCTTGACTCACCGATGGGTAGTCAAGGTCAACGGCGCCGAGGTGA
AGACCTGGCTCGTCAGCGAAAGAACAAAGGACCAGAGCTTCGTACTCTCG
AAGGCGAGCTTGGCGTGA
back to top