mRNA_Ecto-sp13_S_contig12196.1843.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12196.1843.1
Unique NamemRNA_Ecto-sp13_S_contig12196.1843.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12196.1843.1 vs. uniprot
Match: D7FZJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ0_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.530e-44
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 DNPGKASIRGGRRTPLKPLAMDHPGAFSYSAAVESAGHALSGLAAFSLLPLFHFQLFFFLLESMGGNGFVLCLAWVIVPAVATR 252
            DN GK+SIRGGRRTP KPLAMD  GA SYSAAVESAGHALSGLAAFSLLPLFHFQLFFFLLESMGGNGFVLCLAWV+VP+VATR
Sbjct:   32 DNAGKSSIRGGRRTPSKPLAMDRLGASSYSAAVESAGHALSGLAAFSLLPLFHFQLFFFLLESMGGNGFVLCLAWVVVPSVATR 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12196.1843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZJ0_ECTSI1.530e-4490.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12196contigEcto-sp13_S_contig12196:1583..3847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size253
Hectar predicted targeting categorysignal anchor
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.5011013-CDS-Ecto-sp13_S_contig12196:1582..17141681462647.5011013-CDS-Ecto-sp13_S_contig12196:1582..1714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12196 1583..1714 +
1681462647.5130117-CDS-Ecto-sp13_S_contig12196:3727..38471681462647.5130117-CDS-Ecto-sp13_S_contig12196:3727..3847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12196 3728..3847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12196.1843.1prot_Ecto-sp13_S_contig12196.1843.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12196 1583..3847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12196.1843.1

>prot_Ecto-sp13_S_contig12196.1843.1 ID=prot_Ecto-sp13_S_contig12196.1843.1|Name=mRNA_Ecto-sp13_S_contig12196.1843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
DNPGKASIRGGRRTPLKPLAMDHPGAFSYSAAVESAGHALSGLAAFSLLP
LFHFQLFFFLLESMGGNGFVLCLAWVIVPAVATR
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mRNA from alignment at Ecto-sp13_S_contig12196:1583..3847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12196.1843.1 ID=mRNA_Ecto-sp13_S_contig12196.1843.1|Name=mRNA_Ecto-sp13_S_contig12196.1843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12196:1583..3847+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAACCCGGGGAAAGCATCAATCCGTGGTGGTAGGCGAACACCGTTGAA
GCCATTGGCGATGGATCACCCGGGGGCTTTTTCCTATTCGGCTGCAGTCG
AGAGCGCCGGACATGCACTATCGGGGCTTGCGGTGAGATTTTTTGGGTGT
GAGCCAACCTGTGTGAGCACGCATCAGGTGAACGGAGATCGTTGAAGACA
GCAGAGCGGGAGGCAGGAGGCAGGATCGTCCACATAATGAGATCATGAGC
CGTGCACGCTGACGTCTTCCCGTGGTCGGTGCTGCTTGAATCACAAAACA
GACCACCTGTTTAAGTTACAAAACAGAAGCTGGTGTAAGCTCCCTAGACC
CACTTGTCCGCATCGCGACCAAATACACCGCAGCCGCATCGGCATAGCTT
TCAGCTTTCCATACAAGCGAAATCTACAACAACAGGGGCACTGGAACGAC
CCAAGGCTTGCAACGCTTTGCTGGCAATACGATGCCTACGTGAGACTGAG
CGATGGGCACCCACCGGTGAAAGGGATTGTGAAGTCTGGTCCGTGGTTGT
TGCTGTCGAATCTCAATCGACCATTCCACGGCGGCGGCAGGCGGCGGTTG
CTTATAGCTACTGCATACCCACAGGATGCATGACGTAAGATATCACACCC
CCAACCCGTTTTGCAGAAGCTCGATTCCTCGACAACAGAGGGGGTGGCGG
TGCCGGAAACGGCGGCAAAGGAAATGTCTCGTTCGAGAGCTTCCCGGGAA
TGCACCGTTCGATTTCGGCATCCTCTTCGTCGTGGAACAATTGAGGCTTG
AAATTCGGTCCAGGGGTAGTGTGGTATCTTACGGCAGCATCCAAGGTTGT
TATTTAGCCAAACTTTAACCGAGCAAGGGGATGTGCCGACCAACTTCTCA
TCTACTGCTGTCCTCGCAGGCTTTGTCCATTTTGCGAACAGAGCACCACG
TGAAGCAAAATGACGGGGTGTGTTGCCCGGAGCGAACGGGGACTACCGTC
TTCCAGATGACACCCCTCCAGTCTAGTATTGTATGGGATTCGAATGCAGA
CAAAGACTCACCCGTAGTGCGGGTCAATCAGTTGCCTTCGCAGTATCCTT
CGAGAGCGTAAACATGTTGGATGAAGTACACAATCGCGGATGTTGGGTCA
GGGTTCGGGTTACAGGGAAGAGGGTTTGCGTAACGGGCTAGTACGCAGAG
GACAGTGTGGGAGATGCATGTAACTCCCGATGGAAGGATAAAGAAGGGGA
CAGGACCTTTCGTAGCCCCCCCTTTTAGAGAGAGCTATAGGTAGATGATC
CGCCCCCACTCTCATATTAGTTTACTGCAAAGCCAGGGGACAGTAATCAC
TGCTGTCCCAAATAAGTTAGTATCAAGTGAGCTCTTTGTGACGGGTCTTC
CACGTTGCTGAGCGTGTGGTAATATTTCCGTTAACAGCAGACCGACCTTC
CAAGCTCGATTGCTTCACAACCAAGTGGGCGCAGAAAGAGCCCGTTACGG
CTACGGAAAGCGCTCCATGAGATTTTTCCAAAGCCACAATTTCTTTTTTG
TCGGCACAATCTTAGTTGTGGAGCAATCTAGCTTTGCAAATCTGTCTGCA
GTAGAAGGGGTGCTGTCTCTCCACCTCGTATTGCAGACCTGCCTGGACGT
GACATGTTTTGACCATGGAAAGCATGCTCCTGTAGTGTTGTTAGGGGCGC
CGTGCACCCTACCACCGTTTGCTGCTGTGTTGTTTTCATTTCGTTACTGC
GCGAGTCAGTGGGACCAGCACGGAAAAGAGTAGAAGGTGGTAATGAGTAG
AGCCGGGAACGACTTTTGATGTGAAGACAACGGCAACATTAACATTTCTG
ATTCATTGGCACGCGATTTCCCACCTCACCCTACCCCCATCCGCGTTGCC
CCCCAACCCACTCCACTCCCTTTCGCGTCGCCTCCTTTCTTCTGAGTAGA
GACGGACGACTTTCTACTGATGTGAAGATAGCAACAACATATCTTCCGCG
CCATTGGCAGCGCTCTTCCCTGTCCAATCCACTTCACCCCCCATCCGTGT
CGCCCCCAACCCCACCCACTCCACCACCTCCCATTCCCATCCGCGTCACC
CCACCCCACCCCACTCCCGTTCGCGTCGCCCCCTCAATCTTGCAGGCCTT
CTCGCTCCTGCCGCTATTCCACTTCCAGCTGTTTTTCTTCCTACTGGAGA
GTATGGGCGGGAACGGCTTCGTCCTGTGCCTAGCGTGGGTGATCGTTCCC
GCCGTTGCGACGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12196:1583..3847+

>mRNA_Ecto-sp13_S_contig12196.1843.1 ID=mRNA_Ecto-sp13_S_contig12196.1843.1|Name=mRNA_Ecto-sp13_S_contig12196.1843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12196:1583..3847+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAACCCGGGGAAAGCATCAATCCGTGGTGGTAGGCGAACACCGTTGAA
GCCATTGGCGATGGATCACCCGGGGGCTTTTTCCTATTCGGCTGCAGTCG
AGAGCGCCGGACATGCACTATCGGGGCTTGCGGCCTTCTCGCTCCTGCCG
CTATTCCACTTCCAGCTGTTTTTCTTCCTACTGGAGAGTATGGGCGGGAA
CGGCTTCGTCCTGTGCCTAGCGTGGGTGATCGTTCCCGCCGTTGCGACGA
GG
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