mRNA_Ecto-sp13_S_contig12195.1842.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12195.1842.1
Unique NamemRNA_Ecto-sp13_S_contig12195.1842.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12195.1842.1 vs. uniprot
Match: A0A6H5KHF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF2_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.050e-16
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    7 MLVTDELVDRTQNCCLTSVDFLEAMVRLADALPRQGDL 120
            MLVTDELVDRT+NCCLT VDFLEAMVRLADALPRQGDL
Sbjct:    1 MLVTDELVDRTKNCCLTPVDFLEAMVRLADALPRQGDL 38
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BLAST of mRNA_Ecto-sp13_S_contig12195.1842.1 vs. uniprot
Match: D8LET6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET6_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.290e-16
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 SRMLVTDELVDRTQNCCLTSVDFLEAMVRLADALPRQGDL 120
            SRMLVTDELVDRT+NCCLT VDFLEAMVRLADALPRQGDL
Sbjct: 2408 SRMLVTDELVDRTKNCCLTPVDFLEAMVRLADALPRQGDL 2447
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12195.1842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHF2_9PHAE1.050e-1694.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LET6_ECTSI2.290e-1695.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12195contigEcto-sp13_S_contig12195:3059..3178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size114
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.4595103-UTR-Ecto-sp13_S_contig12195:3058..30641681462647.4595103-UTR-Ecto-sp13_S_contig12195:3058..3064Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12195 3059..3064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.4696925-CDS-Ecto-sp13_S_contig12195:3064..31781681462647.4696925-CDS-Ecto-sp13_S_contig12195:3064..3178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12195 3065..3178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12195.1842.1prot_Ecto-sp13_S_contig12195.1842.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12195 3065..3178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12195.1842.1

>prot_Ecto-sp13_S_contig12195.1842.1 ID=prot_Ecto-sp13_S_contig12195.1842.1|Name=mRNA_Ecto-sp13_S_contig12195.1842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MLVTDELVDRTQNCCLTSVDFLEAMVRLADALPRQGDL
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mRNA from alignment at Ecto-sp13_S_contig12195:3059..3178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12195.1842.1 ID=mRNA_Ecto-sp13_S_contig12195.1842.1|Name=mRNA_Ecto-sp13_S_contig12195.1842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12195:3059..3178+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAGGATGCTTGTAACAGATGAGCTTGTGGATCGCACCCAAAATTGCTG
TTTGACGTCCGTGGACTTTTTGGAGGCCATGGTACGACTGGCTGATGCCC
TCCCCCGCCAAGGGGACCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12195:3059..3178+

>mRNA_Ecto-sp13_S_contig12195.1842.1 ID=mRNA_Ecto-sp13_S_contig12195.1842.1|Name=mRNA_Ecto-sp13_S_contig12195.1842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12195:3059..3178+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGTAACAGATGAGCTTGTGGATCGCACCCAAAATTGCTGTTTGAC
GTCCGTGGACTTTTTGGAGGCCATGGTACGACTGGCTGATGCCCTCCCCC
GCCAAGGGGACCTC
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