mRNA_Ecto-sp13_S_contig1219.1837.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1219.1837.1
Unique NamemRNA_Ecto-sp13_S_contig1219.1837.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1219.1837.1 vs. uniprot
Match: D7FZT2_ECTSI (DM13 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT2_ECTSI)

HSP 1 Score: 483 bits (1243), Expect = 2.600e-170
Identity = 251/267 (94.01%), Postives = 260/267 (97.38%), Query Frame = 1 
Query:  166 PDDIETQERTESDSTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVMNEACDEAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLDEDFEAELYDQVALWCGEAQLSDAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMVQIVGSGSIVDDALITTYSLRFQDIEVSSGPDVFVYLTADLDNPEDVDSEGSLRVELDGAERGTFSFTGNFTDAVPEGFVSPEDYAAAVVWCDQFSAFFGSGLFEDVA 966
            PDDIETQERTES  TTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFV+N+ACD+AEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLDEDFEAEL+DQVALWCG AQL DAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMVQI+GSGSIVDDAL+TTYSLRFQDIEVSSGPDVF+YLTAD D+PEDVDSEGSLRVELDG ERGTFSFTGNFTDAVPEGF+SPEDYAAAVVWCDQFS FFGSGLFEDVA
Sbjct:   24 PDDIETQERTESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVINDACDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLDEDFEAELFDQVALWCGGAQLGDAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMVQIIGSGSIVDDALVTTYSLRFQDIEVSSGPDVFLYLTADFDDPEDVDSEGSLRVELDGTERGTFSFTGNFTDAVPEGFISPEDYAAAVVWCDQFSVFFGSGLFEDVA 290
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BLAST of mRNA_Ecto-sp13_S_contig1219.1837.1 vs. uniprot
Match: A0A6H5KF23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF23_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 5.060e-67
Identity = 127/167 (76.05%), Postives = 134/167 (80.24%), Query Frame = 1 
Query:   46 MEGSKTCYGYPRKRVLFCAVPTVLTIIA---------GVTVLVVLLLRNPDDIETQERTESDSTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVMNEACDEAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLDEDFEAELYDQVALWC 519
            MEGSKTC GYPRKRVLFC VP VL IIA         G          +PD IET ERTESDSTTAEELSILKTATLSSSEVSGTV LLSVAA NSSF+ALNDFV+NEACDEAEIRLQE GFTSGTTSGV+V+PLTADTASAVELDFTEPLDE+F A L+DQV   C
Sbjct:    1 MEGSKTCCGYPRKRVLFCTVPAVLAIIASHHCQGDRAG----------SPDFIETPERTESDSTTAEELSILKTATLSSSEVSGTVPLLSVAAGNSSFVALNDFVINEACDEAEIRLQEKGFTSGTTSGVIVMPLTADTASAVELDFTEPLDENFAAVLHDQVRALC 157
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BLAST of mRNA_Ecto-sp13_S_contig1219.1837.1 vs. uniprot
Match: A0A0L0LNG3_9BACT (Putative secreted protein n=1 Tax=Parcubacteria bacterium C7867-007 TaxID=1659201 RepID=A0A0L0LNG3_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 7.820e-5
Identity = 38/125 (30.40%), Postives = 62/125 (49.60%), Query Frame = 1 
Query:  583 PLLLREAVMSGTSSYTVEGMVQIVGSGSIVDDALITTYSLRFQDIEVSSGPDVFVYLTADLDNPEDVDSEGSLRVELDGAERGTFSFTGNFTDAVPEGFVSPEDYAAAVVWCDQFSAFFGSGLFE 957
            P+++  A +  T ++   G  +IV S         TTY LR+++++  +GPD++VYL+ DLD  E V S G ++              GN    +P G ++  +Y  A+VWC QF   F S   +
Sbjct:   55 PVIMPAAQIVDTPAHPASGTARIVISKG-------TTY-LRYENLKTINGPDLYVYLSKDLDAKEFV-SLGRIKAT-----------EGNVNYEIP-GNINLTEYPYALVWCKQFGVLFNSAKLQ 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1219.1837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZT2_ECTSI2.600e-17094.01DM13 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KF23_9PHAE5.060e-6776.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0LNG3_9BACT7.820e-530.40Putative secreted protein n=1 Tax=Parcubacteria ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1219contigEcto-sp13_S_contig1219:494..3426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size969
Hectar predicted targeting categorysignal anchor
Exons4
Ec32 ortholog descriptionDM13 domain
Ec32 orthologEc-21_003070.1
Cds size969
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.2812412-CDS-Ecto-sp13_S_contig1219:493..9971681462647.2812412-CDS-Ecto-sp13_S_contig1219:493..997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1219 494..997 +
1681462647.2905056-CDS-Ecto-sp13_S_contig1219:1937..21371681462647.2905056-CDS-Ecto-sp13_S_contig1219:1937..2137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1219 1938..2137 +
1681462647.3026407-CDS-Ecto-sp13_S_contig1219:2666..28561681462647.3026407-CDS-Ecto-sp13_S_contig1219:2666..2856Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1219 2667..2856 +
1681462647.3136597-CDS-Ecto-sp13_S_contig1219:3351..34261681462647.3136597-CDS-Ecto-sp13_S_contig1219:3351..3426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1219 3352..3426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1219.1837.1prot_Ecto-sp13_S_contig1219.1837.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1219 494..3426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1219.1837.1

>prot_Ecto-sp13_S_contig1219.1837.1 ID=prot_Ecto-sp13_S_contig1219.1837.1|Name=mRNA_Ecto-sp13_S_contig1219.1837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp
EGKWREQKGGFVDQAMEGSKTCYGYPRKRVLFCAVPTVLTIIAGVTVLVV
LLLRNPDDIETQERTESDSTTAEELSILKTATLSSSEVSGTVSLLSVAAD
NSSFLALNDFVMNEACDEAEIRLQEAGFTSGTTSGVVVVPLTADTASAVE
LDFTEPLDEDFEAELYDQVALWCGEAQLSDAVDLVTPTTVGDGGPLLLRE
AVMSGTSSYTVEGMVQIVGSGSIVDDALITTYSLRFQDIEVSSGPDVFVY
LTADLDNPEDVDSEGSLRVELDGAERGTFSFTGNFTDAVPEGFVSPEDYA
AAVVWCDQFSAFFGSGLFEDVA*
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mRNA from alignment at Ecto-sp13_S_contig1219:494..3426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1219.1837.1 ID=mRNA_Ecto-sp13_S_contig1219.1837.1|Name=mRNA_Ecto-sp13_S_contig1219.1837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1219:494..3426+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGAAAGTGGAGAGAGCAGAAAGGCGGTTTTGTTGATCAAGCAATGGA
GGGCAGTAAGACGTGCTACGGTTACCCTCGGAAACGGGTCCTGTTCTGCG
CGGTGCCCACGGTGTTAACCATCATTGCCGGGGTGACCGTGCTGGTTGTT
CTGCTGCTCCGTAACCCCGACGACATCGAGACGCAGGAGAGGACAGAGTC
TGACTCCACGACCGCCGAGGAACTGTCCATCCTGAAGACGGCGACTCTCT
CCTCCAGCGAGGTTTCGGGCACCGTTTCCTTGCTCAGCGTCGCCGCGGAC
AACAGCTCCTTCCTCGCTCTCAACGACTTCGTCATGAACGAGGCCTGCGA
CGAGGCCGAGATCCGGCTGCAGGAAGCAGGATTCACGTCCGGCACCACCA
GCGGCGTCGTCGTGGTGCCTTTGACGGCCGACACAGCGAGTGCTGTGGAG
CTGGATTTCACCGAGCCTCTCGATGAGGATTTCGAGGCAGAACTTTACGA
CCAGGTGAGAGCACTGTGTCTAAAGTTGTAGTCCAGCAGGCTTCAAATCT
TGCCGATGGGAAAAAAAAACATGCGTACGTTCATGTTGAACCATTTCCCG
TATCCGAAATGAGCAACAGCACACCGAGAGTTCTTCTGCACGTATAAGAG
ACATTTCTTTATTTTCTTGCAGCAGCAGAGGGCGCTACAGCAGCAGTGGT
GGTTGATTAGGAAAGCGTGTTCGATACCAGGATGGTTGTGTTGCTCCCAG
GGATGTAAAGTGGAATGGTGTGTGAAGAAGAGGTGTTCCAGAGCCTGACG
TGAAGAGTCAAGAAGAGCGCCAAACCTTGGACGGTGTCTTTAGAACACTA
GGAGAAAATGAACGGCGGTGCCAGACCCTATTCCCTAACCCTAACCCTAG
CCCAACTCCCCGCTTGTATGCTTTACCCAAGATGTTTGCTGAATACCAAA
AACCTGCGAAGGTACAGCCATGTGTCGAAAATAATAAAATAATGCCTTGA
CAAGGGCAACATTAGACTTCAGAGCACGCGCATAACGAACGAAGATCTCC
CTACTCGCGCCTCTCCGTGGTACACGGAACCTCATCGTGCCTCGTCCCTA
CTGCGTTGCTATTCGACAAACGGGGGGTTTCCCTTGTCTCCCGCATGGTC
GACTCTCCCCCCTCTCGCATGTTCAAAAGTTGTTTAATACAAAGTACGTA
CACGCTTTCTACACTTTTTTTTCTCTCCCATGCGGAATACCTCACGGTGG
TTCCGCTTGGTGATGTGAGAGCTTGGTCCGGTGAGAACCCGGCGTCTCCG
TCCCGGCTTTGTAGGGATGCGAGGCCAATGATCCAACGACTATGGCATGC
ACGACTATGCGTATACCCCCCTCCCATGCCATTCATTGCAAAATTCGTCT
GAGAAGACAAACAAGCGAAACGAATCAAACCATCGACGAAAAAGGTCGCC
TTGTGGTGCGGAGAGGCGCAGCTCAGCGACGCGGTGGACCTCGTCACGCC
CACCACCGTGGGGGACGGCGGGCCGCTGCTGCTGCGGGAGGCGGTCATGT
CAGGGACGTCCAGCTACACGGTCGAGGGGATGGTGCAGATCGTCGGGTCG
GGTTCCATCGTCGACGACGCGTTGATCACCACGTACTCCTTGAGGTATGT
GTGTCTTTCTTATTGGCATTGACCCCGCTGACCGGCTGACCAATGAAAAT
ACGTCAGCCTCGGTGCGGTGGAAAACACAAGATGCTTCTTTATGGTCACT
ATCCGGGATCCTGTGACCGAGCGTTGTGGGGAAGTCGACGATATTCTATG
GACAGATGTAGCAAAAACAGAAGAAAACTGCACGTAGGTGTGTGTGTGTG
TGTTTGTGTGTGTGTGTTTTCGCTTGAGCGTTCGGTTTTGTAGGTGTGCG
TGTTTTTCAATATTAGTTTCGACCGCGCTAACCGACTGACCGACAAAAAG
ACCTTGCGTGATTTCGTATGGGTGAGCATTTTTTTTCTTTCTTTGGATTA
CGCAACAAATGTTCATGTTGACGATTGCCCCCCCCTCTTCTCGCAGCGAT
CAGAAACGAACATAAGCCGTCCGCGGTGACATATGTATGTTTTTGCCCTC
GTTCCTTCGACATTCTCCTTCTCCTACATTGATGGGAAACAACGTACAAC
GAAACTCTTGGCGTACACCTCAGGTTCCAGGACATCGAGGTGTCGTCGGG
CCCGGACGTATTCGTGTACCTCACGGCCGACTTGGACAACCCTGAAGACG
TGGACTCGGAGGGGTCTCTCAGAGTCGAGCTGGACGGCGCGGAACGCGGG
ACGTTCTCCTTCACGGGGAACTTCACGGACGCCGTTCCGGAAGGCTTCGT
TTCTCCGGAAGATGTGAGCAATGGAGAAACAGACAGACAGACAGACAGAC
AGACAGATAGACAGACAGACAGATAAATTCAGCGTAATTCAGATAGTTTT
TGGCAGAAGTTCCAGGCGGCAACAAGTGCATCTGCATCATGGAGTAGTAG
ACGACACAACGACCGCAGCAGCAACCGTCGTTCGGCTTTCGACTGCATCC
GGTCACGATGCTTTCGTTTTTGCACTTTGACACTTACACGGCAGTAACTT
GGGTGATGGTGATGAGGACAAACGGTGACGATGTAGCAACGAAAACAATG
CTTACCGTGTTTTGGCGTAGGGGACGATCGTTTTCCGCTCCACGTGCGTG
TTTCCGTGTTTTTGACGTTCGCTCTTGCTCACGTACGCCTCCGTGCTTGC
CCCCCTTTCCCCCCATTCATCCCGTGCTCGGTGCTGTGCCCCTCCTTCCT
CGCTCTGTTCCTACTCACGCGCGCCTACTTCTACTGTACTTGTCGCTCAC
GGACGCAGTACGCGGCGGCAGTCGTTTGGTGCGACCAGTTCAGCGCATTT
TTTGGAAGCGGGCTGTTCGAGGATGTGGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1219:494..3426+

>mRNA_Ecto-sp13_S_contig1219.1837.1 ID=mRNA_Ecto-sp13_S_contig1219.1837.1|Name=mRNA_Ecto-sp13_S_contig1219.1837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1219:494..3426+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGAAAGTGGAGAGAGCAGAAAGGCGGTTTTGTTGATCAAGCAATGGA
GGGCAGTAAGACGTGCTACGGTTACCCTCGGAAACGGGTCCTGTTCTGCG
CGGTGCCCACGGTGTTAACCATCATTGCCGGGGTGACCGTGCTGGTTGTT
CTGCTGCTCCGTAACCCCGACGACATCGAGACGCAGGAGAGGACAGAGTC
TGACTCCACGACCGCCGAGGAACTGTCCATCCTGAAGACGGCGACTCTCT
CCTCCAGCGAGGTTTCGGGCACCGTTTCCTTGCTCAGCGTCGCCGCGGAC
AACAGCTCCTTCCTCGCTCTCAACGACTTCGTCATGAACGAGGCCTGCGA
CGAGGCCGAGATCCGGCTGCAGGAAGCAGGATTCACGTCCGGCACCACCA
GCGGCGTCGTCGTGGTGCCTTTGACGGCCGACACAGCGAGTGCTGTGGAG
CTGGATTTCACCGAGCCTCTCGATGAGGATTTCGAGGCAGAACTTTACGA
CCAGGTCGCCTTGTGGTGCGGAGAGGCGCAGCTCAGCGACGCGGTGGACC
TCGTCACGCCCACCACCGTGGGGGACGGCGGGCCGCTGCTGCTGCGGGAG
GCGGTCATGTCAGGGACGTCCAGCTACACGGTCGAGGGGATGGTGCAGAT
CGTCGGGTCGGGTTCCATCGTCGACGACGCGTTGATCACCACGTACTCCT
TGAGGTTCCAGGACATCGAGGTGTCGTCGGGCCCGGACGTATTCGTGTAC
CTCACGGCCGACTTGGACAACCCTGAAGACGTGGACTCGGAGGGGTCTCT
CAGAGTCGAGCTGGACGGCGCGGAACGCGGGACGTTCTCCTTCACGGGGA
ACTTCACGGACGCCGTTCCGGAAGGCTTCGTTTCTCCGGAAGATTACGCG
GCGGCAGTCGTTTGGTGCGACCAGTTCAGCGCATTTTTTGGAAGCGGGCT
GTTCGAGGATGTGGCATGA
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