mRNA_Ecto-sp13_S_contig12181.1836.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12181.1836.1
Unique NamemRNA_Ecto-sp13_S_contig12181.1836.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12181.1836.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.480e-37
Identity = 75/103 (72.82%), Postives = 78/103 (75.73%), Query Frame = 2 
Query:    2 ALLPSTPSTPPLSSPITAHTARAAFT------E*TPYIHASPQPPSLEPRYQRIALHRWILSAGCFYGCHYPAARARSRLICECWLIC------RLARASPGR 274
            ALLPSTPSTPPLSS  TAHTARAA T      + TPYIHASP+PPSL+ RYQRI LHR ILSAGCF GC YPAAR RSRLICECWLIC      RLARA   R
Sbjct:    2 ALLPSTPSTPPLSSQSTAHTARAASTLFLSLGQKTPYIHASPKPPSLQRRYQRIVLHRRILSAGCFSGCFYPAARERSRLICECWLICCCHRRRRLARAKADR 104
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BLAST of mRNA_Ecto-sp13_S_contig12181.1836.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.210e-25
Identity = 75/103 (72.82%), Postives = 78/103 (75.73%), Query Frame = 3 
Query:   99 MPRHSRQASSPATSASPSTAGSXXXXXXXXXXXXXXXXGAGXXXSAGSSAGSPEQVPADRELQYLCPRTGCTNDLS*EENIRKDRADYPACMNFSAGTCAWTG 407
            MPR SRQASSPAT         XXXXXXXXXXXXXXXX   XXX       SPEQVPADRELQYLCPRTGC  +L  +ENIRKDRADYPAC NF+AGTCAWTG
Sbjct:    1 MPRQSRQASSPATKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEQVPADRELQYLCPRTGCNTNLFLKENIRKDRADYPACRNFNAGTCAWTG 103
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BLAST of mRNA_Ecto-sp13_S_contig12181.1836.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.080e-12
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 3 
Query:  249 GSPEQVPADRELQYLCPRTGCTNDLS*EENIRKDRADYPACMNFS 383
            GS EQVPADRE QYLCP TGC  +L  +ENI K RADYPAC   +
Sbjct:   83 GSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLA 127
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BLAST of mRNA_Ecto-sp13_S_contig12181.1836.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 8.490e-11
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:  249 GSPEQVPADRELQYLCPRTGCTNDLS*EENIRKDRADYPACMNFSAGTCA 398
            GSPEQVPADRELQ+LCP TGC  +L  +ENI KDRADY       AGT A
Sbjct:   53 GSPEQVPADRELQHLCPGTGCNTNLFLKENIHKDRADY---CTTPAGTLA 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12181.1836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKW7_ECTSI3.480e-3772.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCU2_9PHAE7.210e-2572.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWQ2_ECTSI4.080e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LET1_ECTSI8.490e-1166.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12181contigEcto-sp13_S_contig12181:3427..3834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size410
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.1044593-CDS-Ecto-sp13_S_contig12181:3426..38011681462647.1044593-CDS-Ecto-sp13_S_contig12181:3426..3801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12181 3427..3801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.1132495-UTR-Ecto-sp13_S_contig12181:3801..38341681462647.1132495-UTR-Ecto-sp13_S_contig12181:3801..3834Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12181 3802..3834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12181.1836.1prot_Ecto-sp13_S_contig12181.1836.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12181 3427..3801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12181.1836.1

>prot_Ecto-sp13_S_contig12181.1836.1 ID=prot_Ecto-sp13_S_contig12181.1836.1|Name=mRNA_Ecto-sp13_S_contig12181.1836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
GSPSIHSFYTPPLITNHSSHRQSSFHRINTVHPCLATAAKPRAPLPAHRP
PPLDPLRRLLLRLPLPRRPRAEPAHLRVLAHLPARPSKSRPTASCNTSAH
APVAPTTSPERKISAKTGPTTPPA*
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mRNA from alignment at Ecto-sp13_S_contig12181:3427..3834+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12181.1836.1 ID=mRNA_Ecto-sp13_S_contig12181.1836.1|Name=mRNA_Ecto-sp13_S_contig12181.1836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12181:3427..3834+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCTCCTTCCATCCACTCCTTCTACACCCCCCCTCTCATCACCAATCA
CAGCTCACACCGCCAGAGCAGCTTTCACCGAATAAACACCGTACATCCAT
GCCTCGCCACAGCCGCCAAGCCTCGAGCCCCGCTACCAGCGCATCGCCCT
CCACCGCTGGATCCTCTCCGCCGGCTGCTTCTACGGCTGCCACTACCCCG
CCGCCCGCGCGCGGAGCCGGCTCATCTGCGAGTGCTGGCTCATCTGCCGG
CTCGCCCGAGCAAGTCCCGGCCGACCGCGAGCTGCAATACCTCTGCCCAC
GCACCGGTTGCACCAACGACCTCTCCTGAGAGGAAAATATCCGCAAAGAC
AGGGCCGACTACCCCGCCTGCATGAACTTTAGCGCCGGCACCTGCGCGTG
GACCGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12181:3427..3834+

>mRNA_Ecto-sp13_S_contig12181.1836.1 ID=mRNA_Ecto-sp13_S_contig12181.1836.1|Name=mRNA_Ecto-sp13_S_contig12181.1836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12181:3427..3834+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCTCCTTCCATCCACTCCTTCTACACCCCCCCTCTCATCACCAATCA
CAGCTCACACCGCCAGAGCAGCTTTCACCGAATAAACACCGTACATCCAT
GCCTCGCCACAGCCGCCAAGCCTCGAGCCCCGCTACCAGCGCATCGCCCT
CCACCGCTGGATCCTCTCCGCCGGCTGCTTCTACGGCTGCCACTACCCCG
CCGCCCGCGCGCGGAGCCGGCTCATCTGCGAGTGCTGGCTCATCTGCCGG
CTCGCCCGAGCAAGTCCCGGCCGACCGCGAGCTGCAATACCTCTGCCCAC
GCACCGGTTGCACCAACGACCTCTCCTGAGAGGAAAATATCCGCAAAGAC
AGGGCCGACTACCCCGCCTGCATGA
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