mRNA_Ecto-sp13_S_contig12177.1832.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12177.1832.1
Unique NamemRNA_Ecto-sp13_S_contig12177.1832.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Match: D7FT04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT04_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 5.760e-83
Identity = 138/145 (95.17%), Postives = 139/145 (95.86%), Query Frame = 1
Query:   55 MELMVLDRLLYRNRSQHRSSKYYTHVLEVRRACRAFAAPKLPDLLVEGLGLIARVPDSRNGRAREAWVRSAAGGLRRMRVAAVACGHSLETIVKASKFLAHQVSQTYFMALSTVFLASLARLFVCNLHLGGRLLLVHGALLRTFL 489
            MELMVLDRLLYRNRSQHRS+KYYTHVLEVRRAC AFAAPKLPDLL EGLGLIARVPDSRNGRAREAWVRSAA GLRRMRVAAVAC HSLETIVKASK LAHQVSQTYFMALSTVFLASLARLF CNLHLGGRLLLVHGALLRTFL
Sbjct:    1 MELMVLDRLLYRNRSQHRSAKYYTHVLEVRRACGAFAAPKLPDLLAEGLGLIARVPDSRNGRAREAWVRSAARGLRRMRVAAVACAHSLETIVKASKLLAHQVSQTYFMALSTVFLASLARLFACNLHLGGRLLLVHGALLRTFL 145          
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Match: A0A6H5L1C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C4_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.290e-33
Identity = 107/164 (65.24%), Postives = 118/164 (71.95%), Query Frame = 1
Query:  613 MKNENNAA-SFSGNRGAENTSRQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDTGVHIGRVSSAEAEEINRADAASKEALNGAGSRRPAAGMVEGRDSGREGRTAAAATAGLAGGISAARRLGRGGVGGDDGGVSDHAGGDGDNASGVHGEKRLRKKV 1101
            M+NE+NAA SFSGNRG E+T RQ                        XXXXXXXXX DDTGVHIG V+S EAEEINRADA SK+A  GAGSRRPAAG+ EGR+SGR GR AAAAT GLAGG++AARRLG GGVG DD     HAGG+GD+ASGVHG KR RKKV
Sbjct:    1 MQNESNAAASFSGNRGTESTGRQPSSSSSAPVATTGESPPGKQGSGGXXXXXXXXXSDDTGVHIGGVASVEAEEINRADAVSKKAFYGAGSRRPAAGVAEGRNSGRVGR-AAAATTGLAGGLNAARRLGGGGVG-DDXXXXGHAGGNGDSASGVHGAKRPRKKV 162          
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Match: A0A6H5KLL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.390e-26
Identity = 59/68 (86.76%), Postives = 60/68 (88.24%), Query Frame = 1
Query:  286 MRVAAVACGHSLETIVKASKFLAHQVSQTYFMALSTVFLASLARLFVCNLHLGGRLLLVHGALLRTFL 489
            M VAAV C HSLE IVKASK LAHQVSQTYFMALST  LAS+ARLF CNLHLGGRLLLVHGALLRTFL
Sbjct:    1 MSVAAVECAHSLEAIVKASKLLAHQVSQTYFMALSTAILASVARLFACNLHLGGRLLLVHGALLRTFL 68          
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Match: W1NGL2_AMBTC (DUF4477 domain-containing protein n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1NGL2_AMBTC)

HSP 1 Score: 58.2 bits (139), Expect = 8.320e-6
Identity = 44/136 (32.35%), Postives = 72/136 (52.94%), Query Frame = 1
Query:   55 MELMVLDRLLYRNRSQHRSSKYYTHVLEVRRACRAFAAPKLPDLL------VEG------LGLIARVPDSRNGRAREAWVRSAAGGLRRMRVAAVACGHSLETIVKASKFLAHQVSQTYFMALSTVFLASLARLFV 426
            +E  + DRLLY+NR+QHR  +Y+  ++ VRR  + F +  L D++      V G      + L+ R+   RNG  R   ++    G+ R+          +E I+KA   ++  ++Q++FMAL+   LA LARL V
Sbjct:   23 IESDIFDRLLYKNRNQHRRCQYFQWLMRVRRDLKLFKSAGLEDIINSFFQAVNGKKPTLKVHLLERLKKKRNGSGRRENIQERLLGVGRL------LAQMVEPIIKAGIQISSLLAQSFFMALALTILAVLARLRV 152          
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Match: A0A072UYR7_MEDTR (DUF4477 domain-containing protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072UYR7_MEDTR)

HSP 1 Score: 54.3 bits (129), Expect = 4.390e-5
Identity = 39/128 (30.47%), Postives = 66/128 (51.56%), Query Frame = 1
Query:   58 ELMVLDRLLYRNRSQHRSSKYYTHVLEVRRACRAFAAPKLPDLLVEGLGLIARVPDSRNGRAREAWVRSAAGG-----LRRMRVAAVACGHSLETIVKASKFLAHQVSQTYFMALSTVFLASLARLFV 426
            E  +L+RL+Y+N++QHR S Y+ H+L+VRR  R    P + +L+     +I      +     E+  R          L R+  +A      +E I+KA+  ++   ++++FM LS   +A LARL V
Sbjct:   22 ECGILERLVYKNKNQHRRSSYFQHLLKVRRDLRLLHLPNIEELVTSCFNVIKGDRPKQKVHLLESLKRRKCNDVKRTFLERLLGSARLLAEMVEPILKAATEISILFARSFFMGLSVTIMALLARLLV 149          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FT04_ECTSI5.760e-8395.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1C4_9PHAE1.290e-3365.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLL0_9PHAE2.390e-2686.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W1NGL2_AMBTC8.320e-632.35DUF4477 domain-containing protein n=3 Tax=Amborell... [more]
A0A072UYR7_MEDTR4.390e-530.47DUF4477 domain-containing protein n=1 Tax=Medicago... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12177contigEcto-sp13_S_contig12177:350..4365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start1
Seed ortholog score60.1
Seed ortholog evalue2.5e-06
Seed eggNOG ortholog13333.ERM94295
Model size1101
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2C9MA@1,2QSFD@2759,37IC0@33090,3GA2Y@35493
Cds size1101
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12177.1832.1prot_Ecto-sp13_S_contig12177.1832.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12177 350..4365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.779857-CDS-Ecto-sp13_S_contig12177:349..8691681462646.779857-CDS-Ecto-sp13_S_contig12177:349..869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12177 350..869 -
1681462646.791504-CDS-Ecto-sp13_S_contig12177:1258..13501681462646.791504-CDS-Ecto-sp13_S_contig12177:1258..1350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12177 1259..1350 -
1681462646.8013005-CDS-Ecto-sp13_S_contig12177:1620..18791681462646.8013005-CDS-Ecto-sp13_S_contig12177:1620..1879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12177 1621..1879 -
1681462646.8115075-CDS-Ecto-sp13_S_contig12177:2252..23441681462646.8115075-CDS-Ecto-sp13_S_contig12177:2252..2344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12177 2253..2344 -
1681462646.821566-CDS-Ecto-sp13_S_contig12177:2697..27781681462646.821566-CDS-Ecto-sp13_S_contig12177:2697..2778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12177 2698..2778 -
1681462646.8348029-CDS-Ecto-sp13_S_contig12177:4308..43651681462646.8348029-CDS-Ecto-sp13_S_contig12177:4308..4365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12177 4309..4365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12177.1832.1

>prot_Ecto-sp13_S_contig12177.1832.1 ID=prot_Ecto-sp13_S_contig12177.1832.1|Name=mRNA_Ecto-sp13_S_contig12177.1832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=367bp
MARKESSGDDRDGADTAAMELMVLDRLLYRNRSQHRSSKYYTHVLEVRRA
CRAFAAPKLPDLLVEGLGLIARVPDSRNGRAREAWVRSAAGGLRRMRVAA
VACGHSLETIVKASKFLAHQVSQTYFMALSTVFLASLARLFVCNLHLGGR
LLLVHGALLRTFLAQPCLSDSVSTAELAECDVPEDTGSFFSRLREAGGAH
KTSRMKNENNAASFSGNRGAENTSRQSSSSSSTPVATTGESSPGEQGSGG
GDADGSDDDSDDTGVHIGRVSSAEAEEINRADAASKEALNGAGSRRPAAG
MVEGRDSGREGRTAAAATAGLAGGISAARRLGRGGVGGDDGGVSDHAGGD
GDNASGVHGEKRLRKKV
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mRNA from alignment at Ecto-sp13_S_contig12177:350..4365-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12177.1832.1 ID=mRNA_Ecto-sp13_S_contig12177.1832.1|Name=mRNA_Ecto-sp13_S_contig12177.1832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4016bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12177:350..4365- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGAAAGGAATCCAGTGGGGACGACCGTGATGGGGCAGATACGGC GGCCATGGTGAGTTCGCGATGGTGTGTTGGCAGCTGCTGCTCTCAATCTT GCTCAGATAGTCGAGTTGTTGTTCGCTCCGGAGTAGAGGTTTTTATTTGT GTGGTCGGCTACAGCGGGGAGTGCCAGCAGCTACACTAGTCCGCAGTGCA CGCACAGCACCAAAGTCACAGGCAGTACAAGACAGAGCGAGAGGGTGGTG CCTGCCACCCGCCAGGGTACGCCTCCGCCAATTGTCAAATCTTTCTGTCC CAGTTGATTTGTCATTAGGGGCGGTTGCTGCTGCTGTACCGGGTGTCCAG CAATTCACCTGGTCACACGACCAGCAGCACCTTGCAGCTTTGGACTAACG TCGTCGTGCACAAAGTAACCAACATCCGCTGTTGCCAGCAGCTATGCATA CAACCTAAAATGAGGTATGGATGTGGAAATGTCCAACCGGGCCGACATGC AGTGGAGACAACCAGGTGGATGGTTGAATCTTTCCTGGAAAAGGCGATAG TCTACCGGTAGACGACACAAAATAACACACCCACATGACAAACCACACCC CCACAGAATACGACAACCCGGTGATAGTTTTCGGCGTTTCTAACAAACCA TCGATTTATCACCGGGGTTATATAAAATAACACACCCCTTTGAGTTTACG CCGCAGGCTCCTCCGTCTATCACCGGGGTGATACAACATGTGCCGATTGG GCATGTGGGTATCTCACACACACAACATCTGCGTAACTCTCTTTTGGTCG TATCCAATCGCAAGGTATGCAGGAGCCTACTGCAGGACGGATGGCGCACT CTGTGGCCACCGAGTCATGTGCTCAGGAGTTTTGTCACCTCCGTTGAGCT CCTTTGTTTTACCACATTCCGCAGAACCACTAGTCATGAAGTGTTCGTAC AGGCATTGCTATCACACCTTCGCAATATCAACCAAGTGTGCGGCAGCAGC GGTTCAACTCTACAACAAGTGTTTAACACCTTTTTATCACACCATCTCAT TACCACACCCCAAACACACTCTGTGAGTGTGCGGACGTGCTAGCCACACC CCCTTACCCCCTCATTCATCACACCCCAAACACACCCTGTGCGTATTCGG ACGCGCTTTCACACCCCCTGGGTTATCACACCCCCTTACGGGCTCAAGCG AGCTGCACTTCATCACCCGGGCTACATAAGATACCACACCTAGTGATATT ATTTTTCAAGCCCAAAATGTTATGACCGGGTTGCGTTATCTTGTGTCGTC TACGGTACATGGCCGTCCAGCCGAAAACCTCAGGAACCTCCTGAGCTGTT TTGGGAGCACTCGCTGACAACATTCATTTTTCTTGATTTGTTGGTGACAT CGCTGTCCGCTGTATCACGTGCCGCTTCAATGATATGTAAATGGATCGCT ACTGCATGTAAGAGCTGACATCCTGAACCATCTCTTATTTTGGAGCGTTC ACGAACAACAACGTCTGTTGGTGACATCCCTGTTCGCTGCGTCACCTGCT GCTTCCATGATGCGTACATGGATCGCTACTGCTGTAGGAGCTGATGGTGC TCGATCGTCTCCTTTATCGGAACCGAAGCCAGCACCGCAGTTCCAAGTAC TACACCCATGTTCTCGAGGTAAGCGGCAAATCAGTTGTTTAGAGAGGACC CGATTCCCAATGTATCCGTCGATTGACTTTTCACAGAATCCGGTACACCT TCGCACAGCAGTCTTGAAAAAGATCAAGCTCCAGCACAAAATCGAGACAG CAGTGAGGGATCACTCTCGATTCATTCAAATATCTTGCCGCAGCGAGCAA GATACCTCGTCTAGAGACTCGACATTCTCGCAAAGTTGTCGCGCGATGTT TACGAGCGTCGAGAGCGGTTCTGCCGCGACCCCCAATGTTCTCTGAATGT GGTTTTTGATGCGTGTTTCCGACACCATGACTGTTACCTTAATGTTCGAG AGTTGGTGCTTGATTTTGCAGGTGAGACGGGCTTGCAGAGCATTCGCGGC GCCGAAGCTGCCGGACTTGCTGGTGGAAGGTTTGGGCCTCATCGCCCGAG TCCCGGACAGCAGGTGTGCATGCAGTAGCCTGATCTACCAGTCACAGCAG CAGTTCTCCTTGAGAAAGGCACACGCACAGCGGCGAAGTTCCAAGCACAA TATGCTCGAGGTTGTTGCGGCGGCATTGGCTAGCCTGGCGTCTATGTGCT ATGTGGTGCTTCAAAGTAGTATTTTCGCACCGTGCTCTGGGTGCGCTTGT CAATCATCGCGCAGCGATGTTCCCGCCCAGCGTGCAGTTTTTGAGCTATA ACCGATCATTGCCTTCCAGAGGCTTTTGATTCCAACTCTACCAACGGAAT GCTGCTACAGCGACAAAGTTCCATCTAACACCACGAGTGTTTTAATCGGT TTCTTCGCCCTTCTGGGGAAACCCTTTCTTCTTCAGGAACGGTCGGGCGC GGGAGGCGTGGGTTCGCTCTGCCGCAGGGGGGCTCCGCCGAATGCGTGTC GCTGCCGTGGCGTGCGGGCACTCCCTGGAGACCATCGTGAAGGCGTCCAA ATTCCTCGCTCACCAAGTGTCTCAGACGTACTTCATGGCCCTGTCCACGG TCTTCCTCGCGAGTTTGGCGAGGCTCTTCGTGTGCAACCTGCATCTCGGG GGAAGGCTGCTGCTGGTTCACGGTGCCCTGCTACGCACTTTTCTTGTGAG TTTTGCGGCGCCGCAGCTGCACTCCAGTGTGGCAGGGTTTCGAGGGCAGT TTCCGACCTCCTTTCGGTTCCTATTTCCCACCCTTGCAAGTGAGGCAGCC GTGCGACGCTTCGGGTGCAGCATGAAAACCCTAGCTCATGTGTTCTGCTC ACTCTATCCCCTCCCCTCCCGCGTGCTGCCGCGGGGCTGGTTTCGCTTCC GTCCGGCGCGATGGTCGATACTGCTGTGCCCATCCTCTCGTTCAACCGTC CACCCGTCTGATCAGGCGCAACCGTGTTTGTCGGATAGCGTGTCGACGGC AGAGCTCGCGGAGTGTGATGTGCCCGAAGACACCGGGTCCTTCTTTTCTC GCCTTAGGTGCGTATCTTTTCTCGCCTCAGGTGCGTATGCCGTTTGTTAG ATACGCTTGTGGTTGGTGATCTGCCGTATCGGATGGCGGATGAACCCTCC ATTTTTTTTTTGATGTGGTGTGTTTGGTCTTTAGGGCAGGAGGAGGAATT GCTAGCGCCGTAGACCTCAAGGTGTCTATACATAGCGGTGGCACCAGACA CGAACGACCATGTGACCCAGTAGTCATTTTGCACTAGCACTCGGGCAGTG CCCATTGGAACCTGCACACGTGATACCTTGTGTGAAAGTCAGGTCTCGTG GTGCTCTCATTGGTCAGCTTTTTGACACGTATGATTAAGTGCGCGTATAG ACTTCATTTTCTCCCGTCCGGGATTTCCATTTTTTGTCATCGACAGGGAA GCAGGCGGTGCTCACAAGACCTCGCGGATGAAGAACGAAAACAACGCGGC ATCTTTCTCGGGAAACCGGGGAGCCGAAAACACTAGCCGCCAATCCTCGT CCTCTTCGTCAACCCCGGTGGCGACTACTGGCGAATCTTCACCGGGAGAG CAAGGCAGCGGTGGGGGCGATGCCGACGGTAGCGATGACGATAGTGATGA CACCGGTGTGCACATCGGCCGTGTGTCCTCGGCAGAAGCGGAAGAGATAA ACCGCGCCGATGCGGCTTCGAAAGAAGCTTTAAACGGCGCCGGATCTCGC CGACCGGCTGCAGGCATGGTTGAGGGCCGGGATTCCGGGCGCGAGGGCAG AACAGCAGCGGCGGCGACGGCTGGTCTTGCTGGCGGGATAAGCGCGGCAA GAAGACTGGGTCGTGGCGGTGTTGGTGGAGACGATGGTGGTGTCAGTGAC CATGCCGGCGGCGATGGCGACAACGCGAGCGGGGTGCATGGGGAAAAACG GCTACGAAAGAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12177:350..4365-

>mRNA_Ecto-sp13_S_contig12177.1832.1 ID=mRNA_Ecto-sp13_S_contig12177.1832.1|Name=mRNA_Ecto-sp13_S_contig12177.1832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12177:350..4365- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGAAAGGAATCCAGTGGGGACGACCGTGATGGGGCAGATACGGC
GGCCATGGAGCTGATGGTGCTCGATCGTCTCCTTTATCGGAACCGAAGCC
AGCACCGCAGTTCCAAGTACTACACCCATGTTCTCGAGGTGAGACGGGCT
TGCAGAGCATTCGCGGCGCCGAAGCTGCCGGACTTGCTGGTGGAAGGTTT
GGGCCTCATCGCCCGAGTCCCGGACAGCAGGAACGGTCGGGCGCGGGAGG
CGTGGGTTCGCTCTGCCGCAGGGGGGCTCCGCCGAATGCGTGTCGCTGCC
GTGGCGTGCGGGCACTCCCTGGAGACCATCGTGAAGGCGTCCAAATTCCT
CGCTCACCAAGTGTCTCAGACGTACTTCATGGCCCTGTCCACGGTCTTCC
TCGCGAGTTTGGCGAGGCTCTTCGTGTGCAACCTGCATCTCGGGGGAAGG
CTGCTGCTGGTTCACGGTGCCCTGCTACGCACTTTTCTTGCGCAACCGTG
TTTGTCGGATAGCGTGTCGACGGCAGAGCTCGCGGAGTGTGATGTGCCCG
AAGACACCGGGTCCTTCTTTTCTCGCCTTAGGGAAGCAGGCGGTGCTCAC
AAGACCTCGCGGATGAAGAACGAAAACAACGCGGCATCTTTCTCGGGAAA
CCGGGGAGCCGAAAACACTAGCCGCCAATCCTCGTCCTCTTCGTCAACCC
CGGTGGCGACTACTGGCGAATCTTCACCGGGAGAGCAAGGCAGCGGTGGG
GGCGATGCCGACGGTAGCGATGACGATAGTGATGACACCGGTGTGCACAT
CGGCCGTGTGTCCTCGGCAGAAGCGGAAGAGATAAACCGCGCCGATGCGG
CTTCGAAAGAAGCTTTAAACGGCGCCGGATCTCGCCGACCGGCTGCAGGC
ATGGTTGAGGGCCGGGATTCCGGGCGCGAGGGCAGAACAGCAGCGGCGGC
GACGGCTGGTCTTGCTGGCGGGATAAGCGCGGCAAGAAGACTGGGTCGTG
GCGGTGTTGGTGGAGACGATGGTGGTGTCAGTGACCATGCCGGCGGCGAT
GGCGACAACGCGAGCGGGGTGCATGGGGAAAAACGGCTACGAAAGAAGGT
A
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