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Homology
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Match: D7FT04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT04_ECTSI) HSP 1 Score: 259 bits (662), Expect = 5.760e-83 Identity = 138/145 (95.17%), Postives = 139/145 (95.86%), Query Frame = 1
Query: 55 MELMVLDRLLYRNRSQHRSSKYYTHVLEVRRACRAFAAPKLPDLLVEGLGLIARVPDSRNGRAREAWVRSAAGGLRRMRVAAVACGHSLETIVKASKFLAHQVSQTYFMALSTVFLASLARLFVCNLHLGGRLLLVHGALLRTFL 489
MELMVLDRLLYRNRSQHRS+KYYTHVLEVRRAC AFAAPKLPDLL EGLGLIARVPDSRNGRAREAWVRSAA GLRRMRVAAVAC HSLETIVKASK LAHQVSQTYFMALSTVFLASLARLF CNLHLGGRLLLVHGALLRTFL
Sbjct: 1 MELMVLDRLLYRNRSQHRSAKYYTHVLEVRRACGAFAAPKLPDLLAEGLGLIARVPDSRNGRAREAWVRSAARGLRRMRVAAVACAHSLETIVKASKLLAHQVSQTYFMALSTVFLASLARLFACNLHLGGRLLLVHGALLRTFL 145
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Match: A0A6H5L1C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C4_9PHAE) HSP 1 Score: 141 bits (356), Expect = 1.290e-33 Identity = 107/164 (65.24%), Postives = 118/164 (71.95%), Query Frame = 1
Query: 613 MKNENNAA-SFSGNRGAENTSRQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDTGVHIGRVSSAEAEEINRADAASKEALNGAGSRRPAAGMVEGRDSGREGRTAAAATAGLAGGISAARRLGRGGVGGDDGGVSDHAGGDGDNASGVHGEKRLRKKV 1101
M+NE+NAA SFSGNRG E+T RQ XXXXXXXXX DDTGVHIG V+S EAEEINRADA SK+A GAGSRRPAAG+ EGR+SGR GR AAAAT GLAGG++AARRLG GGVG DD HAGG+GD+ASGVHG KR RKKV
Sbjct: 1 MQNESNAAASFSGNRGTESTGRQPSSSSSAPVATTGESPPGKQGSGGXXXXXXXXXSDDTGVHIGGVASVEAEEINRADAVSKKAFYGAGSRRPAAGVAEGRNSGRVGR-AAAATTGLAGGLNAARRLGGGGVG-DDXXXXGHAGGNGDSASGVHGAKRPRKKV 162
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Match: A0A6H5KLL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL0_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.390e-26 Identity = 59/68 (86.76%), Postives = 60/68 (88.24%), Query Frame = 1
Query: 286 MRVAAVACGHSLETIVKASKFLAHQVSQTYFMALSTVFLASLARLFVCNLHLGGRLLLVHGALLRTFL 489
M VAAV C HSLE IVKASK LAHQVSQTYFMALST LAS+ARLF CNLHLGGRLLLVHGALLRTFL
Sbjct: 1 MSVAAVECAHSLEAIVKASKLLAHQVSQTYFMALSTAILASVARLFACNLHLGGRLLLVHGALLRTFL 68
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Match: W1NGL2_AMBTC (DUF4477 domain-containing protein n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1NGL2_AMBTC) HSP 1 Score: 58.2 bits (139), Expect = 8.320e-6 Identity = 44/136 (32.35%), Postives = 72/136 (52.94%), Query Frame = 1
Query: 55 MELMVLDRLLYRNRSQHRSSKYYTHVLEVRRACRAFAAPKLPDLL------VEG------LGLIARVPDSRNGRAREAWVRSAAGGLRRMRVAAVACGHSLETIVKASKFLAHQVSQTYFMALSTVFLASLARLFV 426
+E + DRLLY+NR+QHR +Y+ ++ VRR + F + L D++ V G + L+ R+ RNG R ++ G+ R+ +E I+KA ++ ++Q++FMAL+ LA LARL V
Sbjct: 23 IESDIFDRLLYKNRNQHRRCQYFQWLMRVRRDLKLFKSAGLEDIINSFFQAVNGKKPTLKVHLLERLKKKRNGSGRRENIQERLLGVGRL------LAQMVEPIIKAGIQISSLLAQSFFMALALTILAVLARLRV 152
BLAST of mRNA_Ecto-sp13_S_contig12177.1832.1 vs. uniprot
Match: A0A072UYR7_MEDTR (DUF4477 domain-containing protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072UYR7_MEDTR) HSP 1 Score: 54.3 bits (129), Expect = 4.390e-5 Identity = 39/128 (30.47%), Postives = 66/128 (51.56%), Query Frame = 1
Query: 58 ELMVLDRLLYRNRSQHRSSKYYTHVLEVRRACRAFAAPKLPDLLVEGLGLIARVPDSRNGRAREAWVRSAAGG-----LRRMRVAAVACGHSLETIVKASKFLAHQVSQTYFMALSTVFLASLARLFV 426
E +L+RL+Y+N++QHR S Y+ H+L+VRR R P + +L+ +I + E+ R L R+ +A +E I+KA+ ++ ++++FM LS +A LARL V
Sbjct: 22 ECGILERLVYKNKNQHRRSSYFQHLLKVRRDLRLLHLPNIEELVTSCFNVIKGDRPKQKVHLLESLKRRKCNDVKRTFLERLLGSARLLAEMVEPILKAATEISILFARSFFMGLSVTIMALLARLLV 149
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Viridiplantae |
| Stop | 0 |
| Start | 1 |
| Seed ortholog score | 60.1 |
| Seed ortholog evalue | 2.5e-06 |
| Seed eggNOG ortholog | 13333.ERM94295 |
| Model size | 1101 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| EggNOG OGs | 2C9MA@1,2QSFD@2759,37IC0@33090,3GA2Y@35493 |
| Cds size | 1101 |
| Best tax level | Streptophyta |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462646.779857-CDS-Ecto-sp13_S_contig12177:349..869 | 1681462646.779857-CDS-Ecto-sp13_S_contig12177:349..869 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12177 350..869 - |
| 1681462646.791504-CDS-Ecto-sp13_S_contig12177:1258..1350 | 1681462646.791504-CDS-Ecto-sp13_S_contig12177:1258..1350 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12177 1259..1350 - |
| 1681462646.8013005-CDS-Ecto-sp13_S_contig12177:1620..1879 | 1681462646.8013005-CDS-Ecto-sp13_S_contig12177:1620..1879 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12177 1621..1879 - |
| 1681462646.8115075-CDS-Ecto-sp13_S_contig12177:2252..2344 | 1681462646.8115075-CDS-Ecto-sp13_S_contig12177:2252..2344 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12177 2253..2344 - |
| 1681462646.821566-CDS-Ecto-sp13_S_contig12177:2697..2778 | 1681462646.821566-CDS-Ecto-sp13_S_contig12177:2697..2778 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12177 2698..2778 - |
| 1681462646.8348029-CDS-Ecto-sp13_S_contig12177:4308..4365 | 1681462646.8348029-CDS-Ecto-sp13_S_contig12177:4308..4365 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12177 4309..4365 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12177.1832.1 >prot_Ecto-sp13_S_contig12177.1832.1 ID=prot_Ecto-sp13_S_contig12177.1832.1|Name=mRNA_Ecto-sp13_S_contig12177.1832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=367bp
MARKESSGDDRDGADTAAMELMVLDRLLYRNRSQHRSSKYYTHVLEVRRA CRAFAAPKLPDLLVEGLGLIARVPDSRNGRAREAWVRSAAGGLRRMRVAA VACGHSLETIVKASKFLAHQVSQTYFMALSTVFLASLARLFVCNLHLGGR LLLVHGALLRTFLAQPCLSDSVSTAELAECDVPEDTGSFFSRLREAGGAH KTSRMKNENNAASFSGNRGAENTSRQSSSSSSTPVATTGESSPGEQGSGG GDADGSDDDSDDTGVHIGRVSSAEAEEINRADAASKEALNGAGSRRPAAG MVEGRDSGREGRTAAAATAGLAGGISAARRLGRGGVGGDDGGVSDHAGGD GDNASGVHGEKRLRKKV back to topmRNA from alignment at Ecto-sp13_S_contig12177:350..4365- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig12177.1832.1 ID=mRNA_Ecto-sp13_S_contig12177.1832.1|Name=mRNA_Ecto-sp13_S_contig12177.1832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4016bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12177:350..4365- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGCCAGAAAGGAATCCAGTGGGGACGACCGTGATGGGGCAGATACGGC
GGCCATGGTGAGTTCGCGATGGTGTGTTGGCAGCTGCTGCTCTCAATCTT
GCTCAGATAGTCGAGTTGTTGTTCGCTCCGGAGTAGAGGTTTTTATTTGT
GTGGTCGGCTACAGCGGGGAGTGCCAGCAGCTACACTAGTCCGCAGTGCA
CGCACAGCACCAAAGTCACAGGCAGTACAAGACAGAGCGAGAGGGTGGTG
CCTGCCACCCGCCAGGGTACGCCTCCGCCAATTGTCAAATCTTTCTGTCC
CAGTTGATTTGTCATTAGGGGCGGTTGCTGCTGCTGTACCGGGTGTCCAG
CAATTCACCTGGTCACACGACCAGCAGCACCTTGCAGCTTTGGACTAACG
TCGTCGTGCACAAAGTAACCAACATCCGCTGTTGCCAGCAGCTATGCATA
CAACCTAAAATGAGGTATGGATGTGGAAATGTCCAACCGGGCCGACATGC
AGTGGAGACAACCAGGTGGATGGTTGAATCTTTCCTGGAAAAGGCGATAG
TCTACCGGTAGACGACACAAAATAACACACCCACATGACAAACCACACCC
CCACAGAATACGACAACCCGGTGATAGTTTTCGGCGTTTCTAACAAACCA
TCGATTTATCACCGGGGTTATATAAAATAACACACCCCTTTGAGTTTACG
CCGCAGGCTCCTCCGTCTATCACCGGGGTGATACAACATGTGCCGATTGG
GCATGTGGGTATCTCACACACACAACATCTGCGTAACTCTCTTTTGGTCG
TATCCAATCGCAAGGTATGCAGGAGCCTACTGCAGGACGGATGGCGCACT
CTGTGGCCACCGAGTCATGTGCTCAGGAGTTTTGTCACCTCCGTTGAGCT
CCTTTGTTTTACCACATTCCGCAGAACCACTAGTCATGAAGTGTTCGTAC
AGGCATTGCTATCACACCTTCGCAATATCAACCAAGTGTGCGGCAGCAGC
GGTTCAACTCTACAACAAGTGTTTAACACCTTTTTATCACACCATCTCAT
TACCACACCCCAAACACACTCTGTGAGTGTGCGGACGTGCTAGCCACACC
CCCTTACCCCCTCATTCATCACACCCCAAACACACCCTGTGCGTATTCGG
ACGCGCTTTCACACCCCCTGGGTTATCACACCCCCTTACGGGCTCAAGCG
AGCTGCACTTCATCACCCGGGCTACATAAGATACCACACCTAGTGATATT
ATTTTTCAAGCCCAAAATGTTATGACCGGGTTGCGTTATCTTGTGTCGTC
TACGGTACATGGCCGTCCAGCCGAAAACCTCAGGAACCTCCTGAGCTGTT
TTGGGAGCACTCGCTGACAACATTCATTTTTCTTGATTTGTTGGTGACAT
CGCTGTCCGCTGTATCACGTGCCGCTTCAATGATATGTAAATGGATCGCT
ACTGCATGTAAGAGCTGACATCCTGAACCATCTCTTATTTTGGAGCGTTC
ACGAACAACAACGTCTGTTGGTGACATCCCTGTTCGCTGCGTCACCTGCT
GCTTCCATGATGCGTACATGGATCGCTACTGCTGTAGGAGCTGATGGTGC
TCGATCGTCTCCTTTATCGGAACCGAAGCCAGCACCGCAGTTCCAAGTAC
TACACCCATGTTCTCGAGGTAAGCGGCAAATCAGTTGTTTAGAGAGGACC
CGATTCCCAATGTATCCGTCGATTGACTTTTCACAGAATCCGGTACACCT
TCGCACAGCAGTCTTGAAAAAGATCAAGCTCCAGCACAAAATCGAGACAG
CAGTGAGGGATCACTCTCGATTCATTCAAATATCTTGCCGCAGCGAGCAA
GATACCTCGTCTAGAGACTCGACATTCTCGCAAAGTTGTCGCGCGATGTT
TACGAGCGTCGAGAGCGGTTCTGCCGCGACCCCCAATGTTCTCTGAATGT
GGTTTTTGATGCGTGTTTCCGACACCATGACTGTTACCTTAATGTTCGAG
AGTTGGTGCTTGATTTTGCAGGTGAGACGGGCTTGCAGAGCATTCGCGGC
GCCGAAGCTGCCGGACTTGCTGGTGGAAGGTTTGGGCCTCATCGCCCGAG
TCCCGGACAGCAGGTGTGCATGCAGTAGCCTGATCTACCAGTCACAGCAG
CAGTTCTCCTTGAGAAAGGCACACGCACAGCGGCGAAGTTCCAAGCACAA
TATGCTCGAGGTTGTTGCGGCGGCATTGGCTAGCCTGGCGTCTATGTGCT
ATGTGGTGCTTCAAAGTAGTATTTTCGCACCGTGCTCTGGGTGCGCTTGT
CAATCATCGCGCAGCGATGTTCCCGCCCAGCGTGCAGTTTTTGAGCTATA
ACCGATCATTGCCTTCCAGAGGCTTTTGATTCCAACTCTACCAACGGAAT
GCTGCTACAGCGACAAAGTTCCATCTAACACCACGAGTGTTTTAATCGGT
TTCTTCGCCCTTCTGGGGAAACCCTTTCTTCTTCAGGAACGGTCGGGCGC
GGGAGGCGTGGGTTCGCTCTGCCGCAGGGGGGCTCCGCCGAATGCGTGTC
GCTGCCGTGGCGTGCGGGCACTCCCTGGAGACCATCGTGAAGGCGTCCAA
ATTCCTCGCTCACCAAGTGTCTCAGACGTACTTCATGGCCCTGTCCACGG
TCTTCCTCGCGAGTTTGGCGAGGCTCTTCGTGTGCAACCTGCATCTCGGG
GGAAGGCTGCTGCTGGTTCACGGTGCCCTGCTACGCACTTTTCTTGTGAG
TTTTGCGGCGCCGCAGCTGCACTCCAGTGTGGCAGGGTTTCGAGGGCAGT
TTCCGACCTCCTTTCGGTTCCTATTTCCCACCCTTGCAAGTGAGGCAGCC
GTGCGACGCTTCGGGTGCAGCATGAAAACCCTAGCTCATGTGTTCTGCTC
ACTCTATCCCCTCCCCTCCCGCGTGCTGCCGCGGGGCTGGTTTCGCTTCC
GTCCGGCGCGATGGTCGATACTGCTGTGCCCATCCTCTCGTTCAACCGTC
CACCCGTCTGATCAGGCGCAACCGTGTTTGTCGGATAGCGTGTCGACGGC
AGAGCTCGCGGAGTGTGATGTGCCCGAAGACACCGGGTCCTTCTTTTCTC
GCCTTAGGTGCGTATCTTTTCTCGCCTCAGGTGCGTATGCCGTTTGTTAG
ATACGCTTGTGGTTGGTGATCTGCCGTATCGGATGGCGGATGAACCCTCC
ATTTTTTTTTTGATGTGGTGTGTTTGGTCTTTAGGGCAGGAGGAGGAATT
GCTAGCGCCGTAGACCTCAAGGTGTCTATACATAGCGGTGGCACCAGACA
CGAACGACCATGTGACCCAGTAGTCATTTTGCACTAGCACTCGGGCAGTG
CCCATTGGAACCTGCACACGTGATACCTTGTGTGAAAGTCAGGTCTCGTG
GTGCTCTCATTGGTCAGCTTTTTGACACGTATGATTAAGTGCGCGTATAG
ACTTCATTTTCTCCCGTCCGGGATTTCCATTTTTTGTCATCGACAGGGAA
GCAGGCGGTGCTCACAAGACCTCGCGGATGAAGAACGAAAACAACGCGGC
ATCTTTCTCGGGAAACCGGGGAGCCGAAAACACTAGCCGCCAATCCTCGT
CCTCTTCGTCAACCCCGGTGGCGACTACTGGCGAATCTTCACCGGGAGAG
CAAGGCAGCGGTGGGGGCGATGCCGACGGTAGCGATGACGATAGTGATGA
CACCGGTGTGCACATCGGCCGTGTGTCCTCGGCAGAAGCGGAAGAGATAA
ACCGCGCCGATGCGGCTTCGAAAGAAGCTTTAAACGGCGCCGGATCTCGC
CGACCGGCTGCAGGCATGGTTGAGGGCCGGGATTCCGGGCGCGAGGGCAG
AACAGCAGCGGCGGCGACGGCTGGTCTTGCTGGCGGGATAAGCGCGGCAA
GAAGACTGGGTCGTGGCGGTGTTGGTGGAGACGATGGTGGTGTCAGTGAC
CATGCCGGCGGCGATGGCGACAACGCGAGCGGGGTGCATGGGGAAAAACG
GCTACGAAAGAAGGTA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig12177:350..4365- >mRNA_Ecto-sp13_S_contig12177.1832.1 ID=mRNA_Ecto-sp13_S_contig12177.1832.1|Name=mRNA_Ecto-sp13_S_contig12177.1832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12177:350..4365- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGCCAGAAAGGAATCCAGTGGGGACGACCGTGATGGGGCAGATACGGC GGCCATGGAGCTGATGGTGCTCGATCGTCTCCTTTATCGGAACCGAAGCC AGCACCGCAGTTCCAAGTACTACACCCATGTTCTCGAGGTGAGACGGGCT TGCAGAGCATTCGCGGCGCCGAAGCTGCCGGACTTGCTGGTGGAAGGTTT GGGCCTCATCGCCCGAGTCCCGGACAGCAGGAACGGTCGGGCGCGGGAGG CGTGGGTTCGCTCTGCCGCAGGGGGGCTCCGCCGAATGCGTGTCGCTGCC GTGGCGTGCGGGCACTCCCTGGAGACCATCGTGAAGGCGTCCAAATTCCT CGCTCACCAAGTGTCTCAGACGTACTTCATGGCCCTGTCCACGGTCTTCC TCGCGAGTTTGGCGAGGCTCTTCGTGTGCAACCTGCATCTCGGGGGAAGG CTGCTGCTGGTTCACGGTGCCCTGCTACGCACTTTTCTTGCGCAACCGTG TTTGTCGGATAGCGTGTCGACGGCAGAGCTCGCGGAGTGTGATGTGCCCG AAGACACCGGGTCCTTCTTTTCTCGCCTTAGGGAAGCAGGCGGTGCTCAC AAGACCTCGCGGATGAAGAACGAAAACAACGCGGCATCTTTCTCGGGAAA CCGGGGAGCCGAAAACACTAGCCGCCAATCCTCGTCCTCTTCGTCAACCC CGGTGGCGACTACTGGCGAATCTTCACCGGGAGAGCAAGGCAGCGGTGGG GGCGATGCCGACGGTAGCGATGACGATAGTGATGACACCGGTGTGCACAT CGGCCGTGTGTCCTCGGCAGAAGCGGAAGAGATAAACCGCGCCGATGCGG CTTCGAAAGAAGCTTTAAACGGCGCCGGATCTCGCCGACCGGCTGCAGGC ATGGTTGAGGGCCGGGATTCCGGGCGCGAGGGCAGAACAGCAGCGGCGGC GACGGCTGGTCTTGCTGGCGGGATAAGCGCGGCAAGAAGACTGGGTCGTG GCGGTGTTGGTGGAGACGATGGTGGTGTCAGTGACCATGCCGGCGGCGAT GGCGACAACGCGAGCGGGGTGCATGGGGAAAAACGGCTACGAAAGAAGGT A back to top
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