mRNA_Ecto-sp13_S_contig12173.1831.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Match: D7G4K4_ECTSI (Spondin domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI) HSP 1 Score: 419 bits (1076), Expect = 1.270e-146 Identity = 207/223 (92.83%), Postives = 213/223 (95.52%), Query Frame = 1
Query: 1 MVKFTAGFALASVLSLAHATDFKASELRVRVRNLTYLQPFSPMLVVAHTDDVALFKEGLPANDAIKLMAEDGDNSALLELAASDGVAPFICGAVAGEGPVLPGETWRGTLTIDESVCPDPVYSVVSMLINTNDAFVGIDSDDLNVHGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNIEDGPGEGFVHVHRGFHGVGPDLGEANYDWRNPVAEVFIARQ 669
MVKFTAGFALASVLSLAHATDFK VRVRNLTYLQPFSPMLVVAHT+DVALFKEGLPA+DAIKLMAEDGDNSALLELAASD VAP+ICGAVAGEGPV PGETWRGTLTIDES CPDPVYSVVSMLINTNDAFVGIDSDDLNV+GSSKVFPPAFDAGTEANNELCTHIPGPACPADSGN+ED PGE F+HVHRGFHGVGPDLGEANYDWRNPVAEVFIARQ
Sbjct: 1 MVKFTAGFALASVLSLAHATDFK-----VRVRNLTYLQPFSPMLVVAHTNDVALFKEGLPASDAIKLMAEDGDNSALLELAASDDVAPYICGAVAGEGPVFPGETWRGTLTIDESACPDPVYSVVSMLINTNDAFVGIDSDDLNVYGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDVPGEEFIHVHRGFHGVGPDLGEANYDWRNPVAEVFIARQ 218
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Match: D7G4K3_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI) HSP 1 Score: 331 bits (849), Expect = 2.680e-112 Identity = 155/198 (78.28%), Postives = 176/198 (88.89%), Query Frame = 1
Query: 70 ASELRVRVRNLTYLQPFSPMLVVAHTDDVALFKEGLPANDAIKLMAEDGDNSALLELAASDGVAPFICGAVAGEGPVLPGETWRGTLTIDESVCPDPVYSVVSMLINTNDAFVGIDSDDLNVHGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNIEDGPGEGFVHVHRGFHGVGPDLGEANYDWRNPVAEVFIA 663
A E+ VRVRNLTYLQPFSPM VVAHT+DV++F+EG PA+DA+K+MAEDGDNSAL+EL AS+ V P+ICG V GE P+ PG+TWRG +T+DES+CPD YSVVSMLINTNDAFVGIDS+ L G+ KVFPPAFDAGTEANNELCTHIPGPACPADSGN+EDGPGEGF+ V RGFHGVGPDLGEANYDWRNPVAEV +A
Sbjct: 4 AGEVYVRVRNLTYLQPFSPMFVVAHTNDVSIFREGFPASDAVKIMAEDGDNSALVELLASEDVEPYICGGVMGEAPLFPGDTWRGVMTVDESICPDAQYSVVSMLINTNDAFVGIDSNRL--VGTEKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDGPGEGFISVSRGFHGVGPDLGEANYDWRNPVAEVVVA 199
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Match: D7FIE5_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI) HSP 1 Score: 330 bits (845), Expect = 2.190e-111 Identity = 161/224 (71.88%), Postives = 188/224 (83.93%), Query Frame = 1
Query: 1 MVKFTAGFALASVLSLAHAT--DFKASELRVRVRNLTYLQPFSPMLVVAHTDDVALFKEGLPANDAIKLMAEDGDNSALLELAASDGVAPFICGAVAGEGPVLPGETWRGTLTIDESVCPDPVYSVVSMLINTNDAFVGIDSDDLNVHGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNIEDGPGEGFVHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 666
MV FTA FA+AS++SLA+A+ D+ +VRVRNLTYLQPFSP L+VAHT DVALFKEG PANDAIKLMAEDGDNSALLEL+ S VAP+ICG V EGPV PGETWRG L +D +CP+PVYSVV+MLINTNDAFVGIDSD L + GS+K FPPAFDAGTE N+E C++IPGP CPA SGN ++GPGEG++HVHRG HGVG DL EA+YDWRNPVAE++I +
Sbjct: 1 MVNFTAAFAMASLVSLANASGKDYNTVPFKVRVRNLTYLQPFSPPLIVAHTKDVALFKEGFPANDAIKLMAEDGDNSALLELSESSDVAPYICGVVVAEGPVFPGETWRGQLDVDPYICPNPVYSVVTMLINTNDAFVGIDSDTLEL-GSTKAFPPAFDAGTEVNDERCSNIPGPGCPAGSGNNQNGPGEGYIHVHRGVHGVG-DLEEASYDWRNPVAEIYIQK 222
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Match: D7G3Z4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z4_ECTSI) HSP 1 Score: 205 bits (521), Expect = 1.190e-61 Identity = 108/197 (54.82%), Postives = 135/197 (68.53%), Query Frame = 1
Query: 82 RVRVRNLTYLQPFSPMLVVAHTDDVALFKEGLPANDAIKLMAEDGDNSALLELAASDGVAPFICGAVAGEGPVLPGETWRGTLTIDESVCPDPVYSVVSMLINTNDAFVGIDSDDLNVHGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNIED-GPG-EGFVHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 666
+VRV NLT+ Q FSP ++VAH LF G A AIKLMAEDG+N ++ +A +G CG A EGP+LPG+TW G +T D C +PVYSVV+ L NTNDAF+GID SK+FPPAFDAGTE NNE CT +PG ACPA + E+ G G EGF+HVHRG +GVG DL +A+Y W+NPVAEV +++
Sbjct: 76 KVRVTNLTFKQDFSPPIIVAHEKGSHLFPVGGKARPAIKLMAEDGNNRNIMAIATREG---GFCGFAAAEGPLLPGKTWNGEITFDTDKCKEPVYSVVAKLTNTNDAFMGIDGSKFLDKHPSKLFPPAFDAGTEKNNEKCTCMPGRACPASPKSRENHGLGSEGFIHVHRGINGVG-DLSKADYGWKNPVAEVVVSK 268
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Match: D7G413_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G413_ECTSI) HSP 1 Score: 196 bits (499), Expect = 3.080e-59 Identity = 108/200 (54.00%), Postives = 133/200 (66.50%), Query Frame = 1
Query: 82 RVRVRNLTYLQPFSPMLVVAHTDDVALFKEGLPANDAIKLMAEDGDNSALLELAAS--DGVAPFICGAVAGEGPVLPGETWRGTLTIDESVCPDPVYSVVSMLINTNDAFVGIDSDDLNVHGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNIEDGPG---EGFVHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 666
+VRV NLT+ Q FSP ++VAH LF +G A AIK MAE+G N +E+ A+ DG CG A EGP+LPG+TW G +T D + C PVYSVV+ L NTNDAF+GID SK+FPPAFDAGTE NNE CT I G ACPA E+ G EGF+HVHRG +GVG DL +A+YDW+NPVAEV +++
Sbjct: 5 KVRVTNLTFKQDFSPPIIVAHEKGSPLFSKGRKARGAIKRMAEEGVNR-FIEIIATREDG----FCGFAAAEGPLLPGKTWNGEITFDANKCKRPVYSVVAKLTNTNDAFMGIDGSKFLDKRPSKLFPPAFDAGTEKNNEKCTCIRGRACPASPKPRENLGGRGSEGFIHVHRGINGVG-DLSQADYDWKNPVAEVVVSK 198
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Match: D7G405_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G405_ECTSI) HSP 1 Score: 189 bits (480), Expect = 3.190e-56 Identity = 109/216 (50.46%), Postives = 134/216 (62.04%), Query Frame = 1
Query: 37 VLSLAHATDFKASELR---VRVRNLTYLQPFSPMLVVAHTDDVA-LFKEGLPANDAIKLMAEDGDNSALLELAASDGVAPFICGAVAGEGPVLPGETWRGTLTIDESVCPDPVYSVVSMLINTNDAFVGIDSDDLNVHGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNIED-GPG-EGFVHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 666
+LSLA S ++ VRV NLT+ Q FSP ++VAH LF G A AIK MAE+G N + +A + CG EGP+LPG+TW G +T D + C +PVYSVV+ L NTNDAF+GID SK FPPAFDAGTE NNE CT +PG ACPA E+ G G EGF+HVHRG GVG DL +A+Y W NPVAEV +++
Sbjct: 1 MLSLASGGSTSGSSMKTYKVRVTNLTFKQDFSPPIIVAHEKGSRPLFSMGGKARPAIKRMAEEGVNGMVKVIATRES---GFCGFAVAEGPLLPGKTWNGEITFDTNKCKEPVYSVVAKLTNTNDAFMGIDGSKFLDKCPSKRFPPAFDAGTEKNNEKCTCMPGRACPASPKTRENHGRGSEGFIHVHRGIDGVG-DLSKADYGWNNPVAEVVVSK 212
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Match: D7G3Z6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z6_ECTSI) HSP 1 Score: 179 bits (455), Expect = 2.910e-52 Identity = 107/232 (46.12%), Postives = 142/232 (61.21%), Query Frame = 1
Query: 1 MVKFTAGFALASVLSLAHATDFKASEL---RVRVRNLTYLQPFSPMLVVAHTDDVA-LFKEGLPANDAIKLMAEDGDNSALLELAASDGVAPFICGAVAGE--GPVLPGETWRGTLTIDESVCPDPVYSVVSMLINTNDAFVGIDSDDLNVHGS-SKVFPPAFDAGTEANNELCTHIPGPACPADSGNIEDGPG---EGFVHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 666
MVKF G ALAS+LSLA + + S + +VRV NLT+ Q FS ++VAH LF EG A +AI ++AE+G + + +A + CG A E G + PG+TW G + D + C DPVYSVV+ L NTNDAF+GI SK FPPAFDAG+E NNE CT +PG ACP + + + G EGF+HVHRGF G+G DL + +Y W+NPVA V +++
Sbjct: 1 MVKFAFGLALASMLSLASGSKMRGSRMQTYKVRVTNLTFKQDFSAAIIVAHEKGSRPLFSEGAKARNAISMLAEEGLSGNVQNIATRE---RGFCGFAAPESKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPAGSCPSKHFPPAFDAGSETNNEKCTCMPGRACPKGTRDARERHGRNSEGFIHVHRGFQGIG-DLSK-DYGWQNPVAVVVVSK 227
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Match: A0A433PQD1_9FUNG (Spondin domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PQD1_9FUNG) HSP 1 Score: 156 bits (395), Expect = 2.770e-43 Identity = 93/212 (43.87%), Postives = 126/212 (59.43%), Query Frame = 1
Query: 43 SLAHATDFKASELRVRVRNLTYLQPFSPMLVVAHTDDVALFKEGLPANDAIKLMAEDGDNSALLELAASDGVAPFICGAVAGEGPVLPGETWRGTLTIDESVCPDPVYSVVSMLINTNDAFVGIDSDDLNVHGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNIEDGPGEGFVHVHRGFHGVG---PDLGEANYDWRNPVAEVFIARQ 669
++A T++ + V+NL YLQPFSP+L V H + LF+ G PA+ A++ +AE GD S + L DG+ ICG G LP T++GT+TI + C +P S+V+ML TNDAF GI++ L S + PA+DAGTE NNE C ++ G CP G GEGFVHVHRG HG+ P L +YDWRNPVA + ++ Q
Sbjct: 16 AVALPTEYVGKTFDITVQNLAYLQPFSPVLAVIHEPSIYLFQLGTPASAALRAVAEGGDPSKFVALF-QDGLEG-ICGWSVAPGKTLPSTTYKGTVTISKP-CTNPHISIVNMLGITNDAFTGINTIPLYGELSKRFEVPAYDAGTEENNEDCQYVFG--CPGSPNLDTPGLGEGFVHVHRGVHGLNVSKPGL-SVDYDWRNPVAYITVSVQ 221
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Match: A0A433DJ30_9FUNG (Spondin domain-containing protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DJ30_9FUNG) HSP 1 Score: 142 bits (359), Expect = 5.480e-38 Identity = 86/212 (40.57%), Postives = 117/212 (55.19%), Query Frame = 1
Query: 37 VLSLAHATDFKASELRVRVRNLTYLQPFSPMLVVAHTDDVALFKEGLPANDAIKLMAEDGDNSALLELAASDGVAPFICGAVAGEGPVLPGETWRGTLTIDESVCPDPVYSVVSMLINTNDAFVGIDSDDLNVHGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNIEDGPGEGFVHVHRGFHGVG---PDLGEANYDWRNPVAEVFIA 663
++++A D A + V NL+Y Q F+P+L V H V +FK G PA+ ++ +AEDG+ + ++L S ICG G PG+T+ G +TI + C DP S+VSML +NDAF GI S L+V A+DAGTE NNE C ++ AC G GEGFVHVHRG HG+ P L YDWR PVA + ++
Sbjct: 14 LVAIASPVDHVAQTFAITVENLSYKQIFTPVLTVIHEPSVTIFKTGTPASLELQYVAEDGNATTFVQLFESG--LSGICGWSVGSELTFPGKTYNGNVTITKP-CQDPHISIVSMLGISNDAFTGISSVPLDVQHKISEQVTAYDAGTEENNEDCVYVG--ACAGSHNLRTPGLGEGFVHVHRGIHGLNVTKPGL-SVEYDWRFPVAYITVS 219
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Match: A0A0S8ARA7_9BACT (Spondin domain-containing protein n=1 Tax=Nitrospira bacterium SG8_35_4 TaxID=1704025 RepID=A0A0S8ARA7_9BACT) HSP 1 Score: 134 bits (336), Expect = 1.590e-34 Identity = 78/193 (40.41%), Postives = 117/193 (60.62%), Query Frame = 1
Query: 91 VRNLTYLQPFSPMLVVAHTDDVALFKEGLPANDAIKLMAEDGDNSALLELAASDGVAPFICGAVAGEGPVLPGETWRGTLTIDESVCPDPVYSVVSMLINTNDAFVGIDSDDLNVHGSSKVF-PPAFDAGTEANNELCTHIPGPACPADSGNIEDGPGEGFVHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 666
V N+T Q F+P+LV+ H V+LF G PA+ A+ +AE GD L E+ + + P + V +G + PGET T+ I +S + S+ +M+I TND F+ ++ G++ ++ PA+DAG+E N+ELC +IPGP C ++ + EDG EG+V +H G HG+G L E+ YDWRNPVA + I R
Sbjct: 35 VTNMTKGQTFTPILVLTHRRGVSLFTPGSPASMALAALAEAGDTGPLTEMMSMN---PGVRDIVTSDGLLFPGET--KTIMIPQSERYRYI-SIAAMIIPTNDGFIALNGVQAPAGGNAVMYLSPAYDAGSEMNDELCDNIPGPVCGGEAISEEDG--EGYVRIHEGIHGIG-SLDESIYDWRNPVARIVIQR 218 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12173.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12173.1831.1 >prot_Ecto-sp13_S_contig12173.1831.1 ID=prot_Ecto-sp13_S_contig12173.1831.1|Name=mRNA_Ecto-sp13_S_contig12173.1831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp MVKFTAGFALASVLSLAHATDFKASELRVRVRNLTYLQPFSPMLVVAHTDback to top mRNA from alignment at Ecto-sp13_S_contig12173:785..4427- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12173.1831.1 ID=mRNA_Ecto-sp13_S_contig12173.1831.1|Name=mRNA_Ecto-sp13_S_contig12173.1831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3643bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12173:785..4427- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12173:785..4427- >mRNA_Ecto-sp13_S_contig12173.1831.1 ID=mRNA_Ecto-sp13_S_contig12173.1831.1|Name=mRNA_Ecto-sp13_S_contig12173.1831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12173:785..4427- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |