mRNA_Ecto-sp13_S_contig12169.1829.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12169.1829.1
Unique NamemRNA_Ecto-sp13_S_contig12169.1829.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Match: D8LKL6_ECTSI (Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL6_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 3.690e-101
Identity = 159/185 (85.95%), Postives = 164/185 (88.65%), Query Frame = 1 
Query:    1 MAAAASLNAVLLVSYYCSASQGLCLGANPAGWQRKQ-HSLPNQQGVRQHQ-QPHQLHHHQLNARNRRRAALPLAVTSDGSSGSNGERSRPETTAGFGSRASRRSKKGVINKNIDSKGGLATTAPPVVLLKRSSRWACVKNCGACCYLAPDERPDLAEYLPDPQEFDLYMSMTGGDGWCKHFDKES 549
            MAAAASLNAVLLVS  CSA+QGLCLGANPAGWQRKQ HS PNQQGVR+HQ Q  +L HH L ARNRRRAALPLA  SDG SGSN +  RPETTAGFGSRASRRSKKG INKN DSKGGLAT AP VVLLKRSSRWACVKNCGACCYLAPDERPDLAEYLPDP+EFDLYMSMTG DGWCKHFDKES
Sbjct:    1 MAAAASLNAVLLVSCCCSAAQGLCLGANPAGWQRKQQHSWPNQQGVRRHQPQQRKLQHHPLYARNRRRAALPLAAASDGGSGSNSDSIRPETTAGFGSRASRRSKKGRINKNTDSKGGLAT-APAVVLLKRSSRWACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYMSMTGSDGWCKHFDKES 184
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BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Match: A0A0P8D9G0_9CYAN (Putative Fe-S-cluster oxidoreductase n=5 Tax=Phormidium TaxID=1198 RepID=A0A0P8D9G0_9CYAN)

HSP 1 Score: 89.4 bits (220), Expect = 1.140e-19
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:  397 WACVKNCGACCYLAPDERPDLAEYLPDPQEFDLYMSMTGGDGWCKHFDKES 549
            W CVK+CGACCYLAPDERPDL EYL  P+E  LY+S+ G DGWCKH+D ++
Sbjct:    4 WQCVKHCGACCYLAPDERPDLDEYL-SPEELKLYLSLVGDDGWCKHYDHDT 53
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BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Match: W7TMW6_9STRA (Uncharacterized protein family UPF0153 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMW6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.970e-18
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:  331 IDSKGGLATTAPPVVLLKRSSRWACVKNCGACCYLAPDERPDLAEYLPDPQEFDLYMSMTGGDGWCKHFDK 543
            I +K    T+ P V  LK S +WACV NCGACCYLAP ERP L +Y  DP++   Y SM G DGWC H+DK
Sbjct:  125 IHNKSVTPTSTPAV--LKVSKKWACVANCGACCYLAPSERPYLLDYFDDPKDLAAYNSMVGDDGWCIHYDK 193
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BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Match: A0A8J7EIP6_9CYAN (YkgJ family cysteine cluster protein n=1 Tax=Nodosilinea sp. LEGE 06152 TaxID=2777966 RepID=A0A8J7EIP6_9CYAN)

HSP 1 Score: 85.9 bits (211), Expect = 2.030e-18
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:  397 WACVKNCGACCYLAPDERPDLAEYLPDPQEFDLYMSMTGGDGWCKHFDK 543
            W CVK+CGACC+LAPDERPDL  YL DP +  LY+SM G DGWC H+DK
Sbjct:    4 WQCVKSCGACCFLAPDERPDLESYL-DPDQLALYISMVGADGWCVHYDK 51
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BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Match: A0A0F5Y754_9CYAN (Fe-S cluster protein n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0F5Y754_9CYAN)

HSP 1 Score: 85.5 bits (210), Expect = 3.440e-18
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:  397 WACVKNCGACCYLAPDERPDLAEYLPDPQEFDLYMSMTGGDGWCKHFDKES 549
            W CVKNCGACCYL P ERP+L EYL DPQ+ +LY+S+ G DGWC H+++E+
Sbjct:    4 WQCVKNCGACCYLEPSERPELDEYL-DPQQIELYLSLVGEDGWCIHYNQET 53
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BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Match: A0A139X7I9_9CYAN (Fe-S cluster protein n=3 Tax=Nostocales TaxID=1161 RepID=A0A139X7I9_9CYAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.510e-17
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:  397 WACVKNCGACCYLAPDERPDLAEYLPDPQEFDLYMSMTGGDGWCKHFDKES 549
            W CVK CGACCYL P ERPDL EYL  P+E +LY+SM G DGWC ++DKE+
Sbjct:    4 WQCVKQCGACCYLDPAERPDLDEYL-SPKELELYLSMVGDDGWCVNYDKEN 53
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BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Match: UPI001DDC23E0 (YkgJ family cysteine cluster protein n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001DDC23E0)

HSP 1 Score: 83.2 bits (204), Expect = 3.000e-17
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:  391 SRWACVKNCGACCYLAPDERPDLAEYLPDPQEFDLYMSMTGGDGWCKHFDKES 549
            SRW CV NCGACC L P++RPDLAEYL  P+E  LYMSM G DGWC ++D ++
Sbjct:   14 SRWQCVNNCGACCNLTPEDRPDLAEYL-QPEELALYMSMVGEDGWCINYDHDN 65
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BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Match: UPI0005655269 (YkgJ family cysteine cluster protein n=1 Tax=Leptolyngbya sp. KIOST-1 TaxID=1229172 RepID=UPI0005655269)

HSP 1 Score: 82.8 bits (203), Expect = 3.170e-17
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:  397 WACVKNCGACCYLAPDERPDLAEYLPDPQEFDLYMSMTGGDGWCKHFDK 543
            W CVK CGACC+LAPDERPDL  YL DP +  LY+SM G DGWC H++K
Sbjct:    4 WQCVKTCGACCFLAPDERPDLESYL-DPDQLALYLSMVGEDGWCIHYNK 51
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BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Match: UPI0016857F2F (YkgJ family cysteine cluster protein n=1 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI0016857F2F)

HSP 1 Score: 82.8 bits (203), Expect = 3.340e-17
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  394 RWACVKNCGACCYLAPDERPDLAEYLPDPQEFDLYMSMTGGDGWCKHFDKES 549
            RW CVKNCGACCYL P ERP+L +YL DP+   LY+SM   DGWC HFD ++
Sbjct:    3 RWCCVKNCGACCYLDPSERPELDDYL-DPEALALYLSMVAEDGWCVHFDPQT 53
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BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Match: UPI00135A027A (YkgJ family cysteine cluster protein n=1 Tax=Sodalinema gerasimenkoae TaxID=2862348 RepID=UPI00135A027A)

HSP 1 Score: 82.4 bits (202), Expect = 5.500e-17
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:  397 WACVKNCGACCYLAPDERPDLAEYLPDPQEFDLYMSMTGGDGWCKHFDKES 549
            W CVK+CGACCYLAP+ERPDL EYL   +E  LY+S+   DGWCKH+D ++
Sbjct:    4 WQCVKHCGACCYLAPEERPDLEEYL-SAEELQLYLSLVTDDGWCKHYDHDT 53
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12169.1829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKL6_ECTSI3.690e-10185.95Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpu... [more]
A0A0P8D9G0_9CYAN1.140e-1968.63Putative Fe-S-cluster oxidoreductase n=5 Tax=Phorm... [more]
W7TMW6_9STRA1.970e-1856.34Uncharacterized protein family UPF0153 n=1 Tax=Nan... [more]
A0A8J7EIP6_9CYAN2.030e-1869.39YkgJ family cysteine cluster protein n=1 Tax=Nodos... [more]
A0A0F5Y754_9CYAN3.440e-1864.71Fe-S cluster protein n=1 Tax=Limnoraphis robusta C... [more]
A0A139X7I9_9CYAN1.510e-1766.67Fe-S cluster protein n=3 Tax=Nostocales TaxID=1161... [more]
UPI001DDC23E03.000e-1764.15YkgJ family cysteine cluster protein n=1 Tax=Water... [more]
UPI00056552693.170e-1767.35YkgJ family cysteine cluster protein n=1 Tax=Lepto... [more]
UPI0016857F2F3.340e-1763.46YkgJ family cysteine cluster protein n=1 Tax=Oscil... [more]
UPI00135A027A5.500e-1762.75YkgJ family cysteine cluster protein n=1 Tax=Sodal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12169contigEcto-sp13_S_contig12169:2298..5156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score300.8
Seed ortholog evalue4.3e-79
Seed eggNOG ortholog2880.D8LKL6
Model size549
KEGG koko:K06940
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.Putative zinc- or iron-chelating domain
EggNOG OGs2RZ66@2759,COG0727@1
Ec32 ortholog descriptionPutative zinc- or iron-chelating domain containing protein
Ec32 orthologEc-16_003430.1
Cds size549
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.5920627-CDS-Ecto-sp13_S_contig12169:2297..26141681462646.5920627-CDS-Ecto-sp13_S_contig12169:2297..2614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12169 2298..2614 +
1681462646.6053872-CDS-Ecto-sp13_S_contig12169:3990..41361681462646.6053872-CDS-Ecto-sp13_S_contig12169:3990..4136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12169 3991..4136 +
1681462646.6154692-CDS-Ecto-sp13_S_contig12169:5070..51561681462646.6154692-CDS-Ecto-sp13_S_contig12169:5070..5156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12169 5071..5156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12169.1829.1prot_Ecto-sp13_S_contig12169.1829.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12169 2298..5156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12169.1829.1

>prot_Ecto-sp13_S_contig12169.1829.1 ID=prot_Ecto-sp13_S_contig12169.1829.1|Name=mRNA_Ecto-sp13_S_contig12169.1829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MAAAASLNAVLLVSYYCSASQGLCLGANPAGWQRKQHSLPNQQGVRQHQQ
PHQLHHHQLNARNRRRAALPLAVTSDGSSGSNGERSRPETTAGFGSRASR
RSKKGVINKNIDSKGGLATTAPPVVLLKRSSRWACVKNCGACCYLAPDER
PDLAEYLPDPQEFDLYMSMTGGDGWCKHFDKES
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mRNA from alignment at Ecto-sp13_S_contig12169:2298..5156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12169.1829.1 ID=mRNA_Ecto-sp13_S_contig12169.1829.1|Name=mRNA_Ecto-sp13_S_contig12169.1829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2859bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12169:2298..5156+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCAGCAGCATCTCTCAACGCCGTGCTTCTGGTATCGTATTATTG
CAGTGCATCGCAAGGCCTATGTCTCGGTGCGAATCCAGCAGGTTGGCAAA
GAAAACAACACTCCTTGCCGAACCAGCAGGGGGTGCGACAACATCAACAG
CCGCACCAGCTTCACCATCATCAACTGAACGCCCGCAATCGCCGACGCGC
TGCTCTACCCCTTGCTGTCACCTCCGACGGTAGCAGTGGAAGCAACGGCG
AAAGAAGTAGACCTGAGACAACGGCAGGGTTCGGGTCCCGAGCAAGCCGC
CGCAGCAAGAAAGGTGTGTCTACTGGGTGTGGTTCACGCGACATGTTTTC
ACGAACGGTGGTGATGGGCTCTCCTGCAACGTCGACATTGGCGTCGCGGT
TGCGATTTACAGAAGAGGCTTCTTTTCATGAAGGCTCGTAGCTCGGATGT
GATTCAGTTATTACTTGGCGGTAGAGTAATCAGCATTGTCGTTGCTCATC
GGTTCGTTTTCTGCAGTAGCGCATTGGGCAAAAAACTGAATAGCCTAAGT
CTATGTAGTTCTTCTATAAATTAGAAATTGAATTAGCCCTCGGCTGTGTC
ACTGCTGTCCGCCCTTCCGTGCATCACATGCGCACCCCCGGCGCGGCAGT
AGGATTTCGTTTTGTGATCACCAATCGTGACAAGGAGTAATCTAACCTGT
TTACCTAAAAAGAGTAAGGTTTTTACACCTTTCGCTTGACAACCAACGAT
AGCGAATGCGCCACCGCTCACGAGCCTATTATTCGCTGGTATCACGGAGG
GTGTAGTTCATGGAGGCGAAGCGTAGATGGGAAGCTGTGTTGTTGCGCTG
CTGTCAAGGGCATCCGCCCATATGGCGTTTTCCCCCACGTTTATGTGCAT
ATTCTGTTCGGCGTGTTTCCACGCAAAACGCAAAGGTTGCTGTCCTACAT
AGGCTGGCTTACGCCCACGGAAAAAGTTAGTTCGCCGTGCTGTGCATGAT
GGTTTCCAAACCCGGCTCCAGGCCCATCACAGCTGTCGCACACTTTGGTG
GTGCACAGCAGTGTCAGCTCTCAGTGGGAACACTCGCGGGTGATTCCACT
TGGAGTGCAGGTCATCAACGGCCCTCCAACAGCCCTCGTATCGTTGCAAA
TCACGGTACCTCCCGCATTTTTTCGCCCCGATCCTTATCCCCCCTAGTTC
TCTGTTAGTTCCAGGCTTGGGCCCAGAAAAAGTCGCGTCCGCTCATTGGG
AGAGGTTGTACAGTACGGAGGGCAGAAGGCTCACTTGGCTTCAATATAGA
AAGTGTCCCCAGAGACACTGGGGACACTTTCTATGCTGAAGCCGAATCAG
CAATTTTTCCAGTACTAGGTTATGTACAGCAGTTTTGCCATCAAGGGGAC
CCGCGGCTTGGGAGATTTTGTTCATGAAGTCAGAAGTTCAGGAGAGCGAC
ACAGGCGTCACAAACACGCAGCGTACCACCTCACAGAAGCATGCTAGACC
ACGGTTTCCCACGCGGGTTCACGTGGCGAAGTATAGTGAAGACCACGTCG
CGGTAAACAGGCATTCAAGTGTTGAGTCCACAAAGTGTCTCCATGTGGGC
TTCCAGTACTAGGAGGGTTAACCCAGAAGTGGCTTTTTCGCTCGTTGGTT
CCTGCTGCCTAATACCCCCACCCATGGCCCGAAAAACAGGTAGAATAAAC
AAGAATATCGATAGCAAGGGTGGGCTCGCTACCACTGCTCCACCGGTCGT
CTTGTTGAAACGATCGAGTCGGTGGGCGTGCGTCAAGAACTGTGGGGCCT
GCTGCTACCTCGCCCCAGATGAGAGGCCGGACTTGGCAGGTGTGTGAAAC
CCGGGGTAGGAATAGAGTCGGGTTCAAAAGGCGGGCAGTGAAGATATCGT
AATATCTTTGTGACAGATGGGATAGGGAAGTCATTTCCTAGCCACAAGGC
AACGTAGGAAGGCCGTCTGTGATCGGTGTTGTGGGAACAATGCTTGTTTC
TCTCGAGGACGCGTAGTCAATAGTCCTACCGCAAAGGCATGCAAAACATG
AGCATACACACACACCCTGCCGGGGCACATCTGGACAAACCCAAGCCCCT
CTCCCTGTCCCCGAAACCAAAGGCGACGGATACAGTTCCGAAGTGCCGTT
CAACAGGAATAGCTGCAAAACGCAGAGAGGAGATGATGGCCTCGCCCGTG
TTGTGACTTCCGAACGCCGTCGACCTGTTTCTTCCAAAAGCCGTTTGTGC
AAGGAGAAATTGGATTTCCACGATAGTGCCGCTGCAGCGAAACGTTTTTT
TTTCGCGCCGGCCAGCAGAGTTTACTCCGCTCCAGCGAGAGGTCTATTTG
CACAATTTGTGACATTAGACTTCTCGTTACATCGGCGTAAGATGCCCTCT
GCTGCTGCTGTTGCTGCTGTGAAAGTTAATTTTCAACTTGCCACACACGT
GCAGTAAGCTGTTTTCGGTGATATCCCCCCGTAACCACAACAAAATTTCA
ATCGGACGCCAAATTCGACAACCATCTGACTGTTCAGTCATGTACATCTT
GGGGCTTTTTTTTTTCTGTAAGAGCGGTGTTGGTCCTCAAGCAAGACAAT
CGACCTATGTAAGGCAGGTGAAATTGGCTGGTATAGACAAGTTATTCTGC
ACATTAAAAAAGGCGAGCGCCCCATACAAGGCGGCCATTTTAATCATCAG
CTGCATCACCATCGCCTTGTTCGGGAACTCCCGCTACCCCTGTATGCCGT
TCTGTCCGTTTTTTTTTCCTCAGAGTACCTCCCAGACCCGCAGGAATTTG
ACTTGTACATGTCCATGACGGGCGGCGACGGCTGGTGCAAGCACTTCGAC
AAGGAGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12169:2298..5156+

>mRNA_Ecto-sp13_S_contig12169.1829.1 ID=mRNA_Ecto-sp13_S_contig12169.1829.1|Name=mRNA_Ecto-sp13_S_contig12169.1829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12169:2298..5156+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCAGCAGCATCTCTCAACGCCGTGCTTCTGGTATCGTATTATTG
CAGTGCATCGCAAGGCCTATGTCTCGGTGCGAATCCAGCAGGTTGGCAAA
GAAAACAACACTCCTTGCCGAACCAGCAGGGGGTGCGACAACATCAACAG
CCGCACCAGCTTCACCATCATCAACTGAACGCCCGCAATCGCCGACGCGC
TGCTCTACCCCTTGCTGTCACCTCCGACGGTAGCAGTGGAAGCAACGGCG
AAAGAAGTAGACCTGAGACAACGGCAGGGTTCGGGTCCCGAGCAAGCCGC
CGCAGCAAGAAAGGTGTAATAAACAAGAATATCGATAGCAAGGGTGGGCT
CGCTACCACTGCTCCACCGGTCGTCTTGTTGAAACGATCGAGTCGGTGGG
CGTGCGTCAAGAACTGTGGGGCCTGCTGCTACCTCGCCCCAGATGAGAGG
CCGGACTTGGCAGAGTACCTCCCAGACCCGCAGGAATTTGACTTGTACAT
GTCCATGACGGGCGGCGACGGCTGGTGCAAGCACTTCGACAAGGAGAGC
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