mRNA_Ecto-sp13_S_contig12167.1828.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12167.1828.1
Unique NamemRNA_Ecto-sp13_S_contig12167.1828.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12167.1828.1 vs. uniprot
Match: A0A6H5K3M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M3_9PHAE)

HSP 1 Score: 530 bits (1366), Expect = 1.210e-186
Identity = 298/332 (89.76%), Postives = 305/332 (91.87%), Query Frame = 1 
Query:    1 MDSTNGLDSRSLLRINAHEESFLPVEVKVGWLSRQASMRSRASAMVGSRISQLDDAIRVRALLSILQSSSATKATPAARPGTPPSGAGAFSVAKIAQESCSTSEGEEGGRSRPKGKRHVRTDSGPPPDLQDLEVFARMAVAKIKVVLFQLASPAEVREREQQGKDVFDVYEGLLTSEALAKAAKEGFPSLDVETLMLPAHFRYRSLVAARHRYLLRKLGVLLDMEDGVDSLLEKAADTEKMDPSSLADVDLSAGEDVHQEGAADARDLSQEGASNHSAASALVLPSNAASAAALGGGTLDTAKKAVARLRRSTSWDQDEEGGEATTEVRLHE 996
            MDSTN LDSRSLLRINAHEE FLPVEVKVGWLSRQASMRSRASAMVGSRISQLDDAIRVRALLSILQS +AT A+  ARP TPPSGAGA S AKIAQ+ C  SEGEE  RS P GK HVRTDSGPPPD QDLEVFARMAVAKIKVVLFQLASPAEVREREQQGKDVFDVYEGLLTSEALAKAAKEGFP+LDV TLMLPAHFRYRSLVAARHRYLLRKLGVLLDMED VDSLLEKAADTEKMDPSSLADVDLSAGEDVH+EGAADAR LSQEGASNHSAASALVLPSNAA AAA+GGGTL TAKKAVARLRRSTSWD+DEEGGEATTE    E
Sbjct:   80 MDSTNALDSRSLLRINAHEEFFLPVEVKVGWLSRQASMRSRASAMVGSRISQLDDAIRVRALLSILQSFNATTAS-VARPETPPSGAGASSAAKIAQDDCPASEGEEVSRSGPTGKGHVRTDSGPPPDPQDLEVFARMAVAKIKVVLFQLASPAEVREREQQGKDVFDVYEGLLTSEALAKAAKEGFPTLDVGTLMLPAHFRYRSLVAARHRYLLRKLGVLLDMEDCVDSLLEKAADTEKMDPSSLADVDLSAGEDVHEEGAADARALSQEGASNHSAASALVLPSNAAPAAAVGGGTLKTAKKAVARLRRSTSWDKDEEGGEATTEGETDE 410
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BLAST of mRNA_Ecto-sp13_S_contig12167.1828.1 vs. uniprot
Match: D8LJG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG2_ECTSI)

HSP 1 Score: 435 bits (1118), Expect = 6.000e-151
Identity = 250/294 (85.03%), Postives = 256/294 (87.07%), Query Frame = 1 
Query:  112 MRSRASAMVGSRISQLDDAIRVRALLSILQSSSATKATPAARPGTPPSGAGAFSVAK---IAQESCSTSEGEEGGRSRPKGKRHVRTDSGPPPDLQDLEVFARMAVAKIKVVLFQLASPAEVREREQQGKDVFDVYEGLLTSEALAKAAKEGFPSLDVETLMLPAHFRYRSLVAARHRYLLRKLGVLLDMEDGVDSLLEKAADTEKMDPSSLADVDLSAGEDVHQEGAADARDLSQEGASNHSAASALVLPSNAASAAALGGGTLDTAKKAVARLRRSTSWDQDEEGGEATTEV 984
            MRSRASAMVGSRISQLDDAIRVRALLSILQSS                            IAQESCS S GEEG  SRPKGKRHVRTDSGPPPDLQDLEVFARMAVAKIKVVLFQLASP EVREREQQGKDVFDVYEGLLTSEALAKAAKEGFP+LDVETLMLPAHFRYRSLVAARHRYLLRKLGVLLDMEDGVDSLLEKAADTEKMDPSSLADVDLSAG+DV  EGAADAR LSQEGAS+HSAASALVLPSNAA AAA+GGGTLDTAKKAVARLRRS SWD+DEEGGEATTE+
Sbjct:    1 MRSRASAMVGSRISQLDDAIRVRALLSILQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAQESCSASGGEEGSGSRPKGKRHVRTDSGPPPDLQDLEVFARMAVAKIKVVLFQLASPVEVREREQQGKDVFDVYEGLLTSEALAKAAKEGFPTLDVETLMLPAHFRYRSLVAARHRYLLRKLGVLLDMEDGVDSLLEKAADTEKMDPSSLADVDLSAGDDVDDEGAADARALSQEGASSHSAASALVLPSNAAPAAAVGGGTLDTAKKAVARLRRSISWDKDEEGGEATTEI 294
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12167.1828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3M3_9PHAE1.210e-18689.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG2_ECTSI6.000e-15185.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12167contigEcto-sp13_S_contig12167:2617..4706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size999
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_009940.1
Cds size999
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.549842-CDS-Ecto-sp13_S_contig12167:2616..29731681462646.549842-CDS-Ecto-sp13_S_contig12167:2616..2973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12167 2617..2973 -
1681462646.561196-CDS-Ecto-sp13_S_contig12167:4064..47061681462646.561196-CDS-Ecto-sp13_S_contig12167:4064..4706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12167 4065..4706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12167.1828.1prot_Ecto-sp13_S_contig12167.1828.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12167 2617..4706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12167.1828.1

>prot_Ecto-sp13_S_contig12167.1828.1 ID=prot_Ecto-sp13_S_contig12167.1828.1|Name=mRNA_Ecto-sp13_S_contig12167.1828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp
MDSTNGLDSRSLLRINAHEESFLPVEVKVGWLSRQASMRSRASAMVGSRI
SQLDDAIRVRALLSILQSSSATKATPAARPGTPPSGAGAFSVAKIAQESC
STSEGEEGGRSRPKGKRHVRTDSGPPPDLQDLEVFARMAVAKIKVVLFQL
ASPAEVREREQQGKDVFDVYEGLLTSEALAKAAKEGFPSLDVETLMLPAH
FRYRSLVAARHRYLLRKLGVLLDMEDGVDSLLEKAADTEKMDPSSLADVD
LSAGEDVHQEGAADARDLSQEGASNHSAASALVLPSNAASAAALGGGTLD
TAKKAVARLRRSTSWDQDEEGGEATTEVRLHE*
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mRNA from alignment at Ecto-sp13_S_contig12167:2617..4706-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12167.1828.1 ID=mRNA_Ecto-sp13_S_contig12167.1828.1|Name=mRNA_Ecto-sp13_S_contig12167.1828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2090bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12167:2617..4706- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTCTACTAACGGTTTGGACTCTCGGTCTCTGCTGAGAATCAACGC
TCACGAGGAATCCTTCCTGCCCGTGGAGGTGAAGGTTGGGTGGCTCTCCA
GGCAGGCCTCCATGCGATCGCGGGCCAGCGCGATGGTGGGAAGCCGGATC
TCGCAGCTGGACGACGCGATCCGAGTCCGAGCTCTCCTATCCATCCTCCA
GTCCTCTTCTGCGACAAAAGCAACACCGGCGGCGAGGCCAGGAACGCCAC
CATCAGGGGCAGGCGCTTTTTCTGTGGCAAAGATCGCCCAGGAGTCGTGT
TCGACATCGGAAGGAGAGGAGGGTGGGAGGAGCAGACCCAAGGGGAAGAG
GCACGTGAGGACCGACAGCGGGCCCCCTCCCGACCTACAGGACCTAGAAG
TCTTTGCAAGGATGGCGGTGGCGAAGATCAAGGTGGTGCTGTTCCAGCTG
GCCAGCCCAGCGGAGGTTAGGGAGAGGGAGCAACAGGGCAAAGACGTGTT
CGACGTGTACGAGGGGCTGCTGACGAGCGAGGCACTGGCGAAGGCGGCCA
AGGAGGGTTTCCCCTCGCTGGACGTGGAGACGCTCATGCTGCCCGCGCAC
TTCCGGTACCGCAGCCTCGTCGCCGCCCGTCATCGCTATCTGGTGTGTGT
TGTGTATGCGTGGTCCCCTTTTTTTGGTGACACACGTACTTGGCTGCGGC
CACTTCAAATCTGTGTCTTGACAATATTCACAAAATAGCGCTCAGAGAGA
GGTTTGAATTTACGAATTTACACCGGGTGAGTCCAAGGGTCTTATTGAAA
AATATACATCAAGACACATGAGGCTACTAAATAGTCGAAAATATAAAAGA
GGGGTCCGTGGGGGACGGGAACGGGGGCTCGAATTTCAATACATTTACGT
CAAGGGGCATCGTGGAATAAACCCCTTTGCAGTCGGGGGGTCAATGGCTT
TTTTTCGTCAAAGAACTCCTCTACACGAGTTCCTACATGAAAAAAGAAAT
TGAAATTGCCCTCCCGATGGGGGGGGGGGTGGCGGTGGCGTATGTGTCCG
GAATTATTACACAACCCCTGGTGGTTCCGTTCGTTCTTTGGCATTGCCAC
GCCGTCCTGTCTCTCCTCTCGCGAGACGTCGTTCGACGGTTTCAACTCCT
AACTTGACGCATGTGACTGGTGTAGGCGTCGTGCGTGTCTCGTCTCGAGG
CAAACGCGAGTTACCGTCTGCACGACAAAGTGGAAATCACGGAATCACTG
CCCCTTCTTCGGGGTTTGCAGAACGCCATTCGGGCCTTGGAGCACCCGGG
TGGTTTCGTCTGACGTGTGCATCAATATGCGCGTGACTGATTTGCTTGGA
TCCAGCGGGAACGATCCGACTTGCTGCCGTATGCACCGAGACGGAGGCTC
TGGTCTTCTTTTCAATGATGTAGATAGCGTCGCCGAAGGTCTGGGTTGCT
ACGTGGTGCTCCGGGGCCCGAGAAGTGTTGGGAGAGGGCCAACGATGACA
GCCATGTTGTCGTGGATGCAAAAGTTTTGATCGAAAACATAACTACAGCA
ATAAAATTCAACAGCAAGAAGAAGAGAAAGAGTTTGTTTGCCCCTCTCGT
AGCCGCCGCCTACCTTATCGTTACGTACGTGTCTAAAAAAAGTAACAGCA
AGAGAGAAAGAGGTTATGTTCCCACCGACTTTTGCAACCGCCGCCCTGTT
TACATTTTCGTTCGCCGGCCGCGGCGGACACAGCTGCGGAAACTCGGGGT
CCTGCTGGACATGGAAGACGGCGTGGACTCGCTGCTCGAAAAGGCGGCCG
ACACCGAAAAAATGGACCCATCAAGCCTTGCCGACGTTGACCTCTCCGCC
GGGGAGGACGTGCACCAGGAGGGAGCGGCGGATGCACGAGACTTGTCGCA
GGAGGGCGCAAGCAACCATTCCGCGGCGTCGGCGCTGGTGTTACCGTCCA
ACGCCGCCTCCGCCGCCGCTCTCGGCGGTGGCACTCTTGATACCGCGAAG
AAGGCCGTGGCGAGGTTGAGGAGGAGCACCAGCTGGGATCAGGATGAGGA
AGGTGGCGAGGCTACCACGGAGGTACGACTTCATGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12167:2617..4706-

>mRNA_Ecto-sp13_S_contig12167.1828.1 ID=mRNA_Ecto-sp13_S_contig12167.1828.1|Name=mRNA_Ecto-sp13_S_contig12167.1828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12167:2617..4706- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTCTACTAACGGTTTGGACTCTCGGTCTCTGCTGAGAATCAACGC
TCACGAGGAATCCTTCCTGCCCGTGGAGGTGAAGGTTGGGTGGCTCTCCA
GGCAGGCCTCCATGCGATCGCGGGCCAGCGCGATGGTGGGAAGCCGGATC
TCGCAGCTGGACGACGCGATCCGAGTCCGAGCTCTCCTATCCATCCTCCA
GTCCTCTTCTGCGACAAAAGCAACACCGGCGGCGAGGCCAGGAACGCCAC
CATCAGGGGCAGGCGCTTTTTCTGTGGCAAAGATCGCCCAGGAGTCGTGT
TCGACATCGGAAGGAGAGGAGGGTGGGAGGAGCAGACCCAAGGGGAAGAG
GCACGTGAGGACCGACAGCGGGCCCCCTCCCGACCTACAGGACCTAGAAG
TCTTTGCAAGGATGGCGGTGGCGAAGATCAAGGTGGTGCTGTTCCAGCTG
GCCAGCCCAGCGGAGGTTAGGGAGAGGGAGCAACAGGGCAAAGACGTGTT
CGACGTGTACGAGGGGCTGCTGACGAGCGAGGCACTGGCGAAGGCGGCCA
AGGAGGGTTTCCCCTCGCTGGACGTGGAGACGCTCATGCTGCCCGCGCAC
TTCCGGTACCGCAGCCTCGTCGCCGCCCGTCATCGCTATCTGCTGCGGAA
ACTCGGGGTCCTGCTGGACATGGAAGACGGCGTGGACTCGCTGCTCGAAA
AGGCGGCCGACACCGAAAAAATGGACCCATCAAGCCTTGCCGACGTTGAC
CTCTCCGCCGGGGAGGACGTGCACCAGGAGGGAGCGGCGGATGCACGAGA
CTTGTCGCAGGAGGGCGCAAGCAACCATTCCGCGGCGTCGGCGCTGGTGT
TACCGTCCAACGCCGCCTCCGCCGCCGCTCTCGGCGGTGGCACTCTTGAT
ACCGCGAAGAAGGCCGTGGCGAGGTTGAGGAGGAGCACCAGCTGGGATCA
GGATGAGGAAGGTGGCGAGGCTACCACGGAGGTACGACTTCATGAGTAG
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