mRNA_Ecto-sp13_S_contig12156.1821.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12156.1821.1
Unique NamemRNA_Ecto-sp13_S_contig12156.1821.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Match: D7FU00_ECTSI (Regulator of G-protein signaling 13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU00_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 6.230e-122
Identity = 184/199 (92.46%), Postives = 189/199 (94.97%), Query Frame = 1 
Query:    1 RYQIMLLSSPCLIPLLVALLVPGAYVFNETVNSCNTTNTSRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNSHQVLARRLAIA*RAKSSGEIAG*DLHLVSLYLGQERLAERPLVRKWERDEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYMETKVA 597
            RYQIMLLSSPCL+PLLV LLVPGAYVF+E VN CNTT+TSRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMT TLLCVTLISVSY LVVVVALDNSHQVLARRLAI  R KSSGEIAG DLHLVSLYLGQERLAERPLV+KWE DEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYM+TKVA
Sbjct:   11 RYQIMLLSSPCLVPLLVTLLVPGAYVFDEAVNLCNTTSTSRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMTRTLLCVTLISVSYALVVVVALDNSHQVLARRLAIVWRGKSSGEIAGGDLHLVSLYLGQERLAERPLVKKWEGDEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYMQTKVA 209
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BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Match: D7FTZ9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 4.350e-68
Identity = 127/198 (64.14%), Postives = 148/198 (74.75%), Query Frame = 1 
Query:    7 QIMLLSSPCLIPLLVALLVPGAYVFNETVNSCNTTNTSRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNSHQVLARRLAIA*RAKSSGEIAG*DLHLVSLYLGQERLAERPLVRKWERDEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYMETKVAQ 600
            QI LLSS  L+P L+ALLVPGAYVF+ET+NSCNTT+TSRTV L MNA G   ICFLWFVC RQLR VRKQFNEY+ +  TL C+ L+ +SYT+ V + LDN H VLARRLAI     ++         L+   +G+      PL++KWE D EYLWSFT+GFSE+PSPAQLKASLAEQLSVEQLR EFRGYM TKVAQ
Sbjct:  126 QIFLLSSISLVPPLIALLVPGAYVFDETINSCNTTSTSRTVGLGMNAVGFYTICFLWFVCGRQLRRVRKQFNEYEAIKWTLSCLILLVLSYTVGVNIILDNKHHVLARRLAIVYPVLTTHT-------LLWGSIGE------PLLKKWEGDREYLWSFTRGFSEMPSPAQLKASLAEQLSVEQLRDEFRGYMRTKVAQ 310
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BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Match: D7FTZ6_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 6.350e-65
Identity = 120/200 (60.00%), Postives = 143/200 (71.50%), Query Frame = 1 
Query:    1 RYQIMLLSSPCLIPLLVALLVPGAYVFNETVNSCNTTNTSRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNSHQVLARRLAIA*RAKSSGEIAG*DLHLVSLYLGQERLAERPLVRKWERDEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYMETKVAQ 600
            +YQ+M++SS  L PLL A+LVP  + F+ETVNSCNTT  SR VVLAMNA G  +IC+LWFVC RQLRWVRKQFNEY+ M  TL C+TL+  SY  VV + L+N H VL RR+AI                ++S Y         P+V+K+  DE YLWSFTKGFSE+PSPAQLKASLAEQLSVEQLR+EFR Y+ETKVAQ
Sbjct:  108 KYQVMVMSSISLGPLLAAVLVPDLHFFDETVNSCNTTTDSRNVVLAMNALGFYLICYLWFVCTRQLRWVRKQFNEYEAMKWTLSCLTLLLFSYAAVVAIILNNQH-VLVRRVAIV-------------YPVLSTYTLLWGSVGEPVVKKFTGDEGYLWSFTKGFSEMPSPAQLKASLAEQLSVEQLRVEFRRYIETKVAQ 293
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BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 8.390e-65
Identity = 128/228 (56.14%), Postives = 148/228 (64.91%), Query Frame = 1 
Query:    1 RYQIMLLSSPCLIPLLVALLVPGAYVFNETVNSCNTTNTSRTVVLAMNAFGCCIICFLW----------------------------FVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNSHQVLARRLAIA*RAKSSGEIAG*DLHLVSLYLGQERLAERPLVRKWERDEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYMETKVAQ 600
            +YQIMLLSS  L P LVALLVPGAYVF+ETVN C TT+TSRTV LAMNA G   IC++W                            FVC RQLRWVRKQFNEY+ M  TL C+TL+  SY +VVVV LD  H V+ RR+AI   A ++  +    +               P+++KW RDEEYLWSFTKGFS+LPSPAQLKASLAEQLSVEQLR EFR Y+ETKVAQ
Sbjct:  124 KYQIMLLSSISLTPALVALLVPGAYVFDETVNLCTTTSTSRTVTLAMNAVGFYTICYIWWRQSYVHVPATGLMRAVCALVSLAAKTRFVCTRQLRWVRKQFNEYETMKWTLSCLTLLLFSYAVVVVVVLDGQH-VIVRRVAIVYPALTTHTVLWGSIG-------------EPVLKKWTRDEEYLWSFTKGFSDLPSPAQLKASLAEQLSVEQLRAEFRRYIETKVAQ 337
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BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Match: A0A6H5K025_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K025_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.800e-55
Identity = 104/172 (60.47%), Postives = 123/172 (71.51%), Query Frame = 1 
Query:    1 RYQIMLLSSPCLIPLLVALLVPGAYVFNETVNSCNTTNTSRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNSHQVLARRLAIA*RAKSSGEIAG*DLHLVSLYLGQERLAERPLVRKWERDEEYLWSFTKGFSELPSPAQ 516
            RYQIMLLSS  L+P LVALLVPGAYVF+ETVNSCNTT+TSR VVLAMN  G   +C+LWFVC RQLRWVRKQFNEY+ M  TL C+TL+  SY +VVVV LDN H V  RR+AI   A ++  +    +               P+++KW  D+EYLWSFTKGFSE+PSPAQ
Sbjct:  251 RYQIMLLSSISLVPPLVALLVPGAYVFDETVNSCNTTSTSRNVVLAMNVVGFYTMCYLWFVCTRQLRWVRKQFNEYETMKWTLSCLTLLLFSYVVVVVVVLDNQH-VYVRRVAIVYPALTTHAVLWGSIG-------------EPVMKKWTGDDEYLWSFTKGFSEMPSPAQ 408
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BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Match: A0A6H5K0N5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N5_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.670e-55
Identity = 115/217 (53.00%), Postives = 138/217 (63.59%), Query Frame = 1 
Query:    1 RYQIMLLSSPCLIPLLVALLVPGAYVFNETVNSCNTTNTSRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNSHQVLARRLAIA*RAKSSGEIAG*DLHLVSLYLGQERLAERPLVRKWERDEEYLWSFTKGFSELPSPAQ-----------------LKASLAEQLSVEQLRIEFRGYMETKVAQ 600
            +YQ++L+SS  L PLL A+LVP  + F+ETVNSCNTT  SR VVLAMNA G  +IC+LWFVC RQLRWVRKQFNEY+ M  TL C+TL+  SY  VV + L+N H V  RR+AI                +++ Y         P+ RK   D EYL SFTKGFSE+PSPAQ                 LKASLAEQLSV+QLR+EFR Y+ET VAQ
Sbjct:   16 KYQVLLMSSISLGPLLAAILVPDLHFFDETVNSCNTTTDSRNVVLAMNALGFYVICYLWFVCARQLRWVRKQFNEYEAMKWTLSCLTLLLFSYAAVVAIILNNRH-VYVRRVAIV-------------YPVLTTYTLLWGSIGEPIKRKLGGDTEYLNSFTKGFSEMPSPAQVRKLPPAARDSSNDLVLLKASLAEQLSVQQLRVEFRRYVETMVAQ 218
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BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 9.490e-48
Identity = 101/199 (50.75%), Postives = 126/199 (63.32%), Query Frame = 1 
Query:    1 RYQIMLLSSPCLIPLLVALLVPGAYVFNETVNSCNTTNTSRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNSHQVLARRLAIA*RAKSSGEIAG*DLHLVSLYLGQERLAERPLVRKWERDEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYMETKVA 597
            R Q++LLSS  LIPLL+A+L P  + F+ET NSC T+  +  VVL M+AFG  +I  LW VC RQLRWVRKQFNEY+ M  TL C+T++  SY +VV + LD  H    RR+AIA                             P   K   + EYL+SFT+GFSE+PSPAQLKA+LA+QLSVEQLR+EFR Y+E KVA
Sbjct:  101 RVQVLLLSSTGLIPLLLAILDPDLFFFDETANSCGTSTGATRVVLGMDAFGFSMILCLWLVCARQLRWVRKQFNEYEAMKWTLSCLTILLFSYAIVVAIILDG-HHCYVRRVAIA---------------------------WEPFKMKLTGNAEYLYSFTQGFSEMPSPAQLKANLAQQLSVEQLRVEFRRYIEAKVA 271
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BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 3.040e-44
Identity = 98/199 (49.25%), Postives = 130/199 (65.33%), Query Frame = 1 
Query:    4 YQIMLLSSPCLIPLLVALLVPGAYVFNETVNSCNTTNTSRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNSHQVLARRLAIA*RAKSSGEIAG*DLHLVSLYLGQERLAERPLVRKWERDEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYMETKVAQ 600
            +QI+ +SS  LIP++    VP    F+E  N+C+TT  S  VVL M+A G   IC+LWFVC RQL+WVRKQFNEY+ M  TLL +T+   SY ++VV  L + + VL RR+++                L++ Y+        P + K   D+EYLWS+TKGF++LPSPAQLKASLAEQLSV+QLR EFR Y++TKVAQ
Sbjct:  115 HQILFMSSLSLIPVVATWAVPHTGYFDEVANTCSTTTFSTIVVLGMDALGFLAICYLWFVCARQLKWVRKQFNEYETMKRTLLYMTITLASYGVIVVYLLAD-NLVLGRRVSVF-------------YPLLTTYILLWGSIREPFMMKILGDDEYLWSYTKGFAQLPSPAQLKASLAEQLSVDQLRDEFRRYIKTKVAQ 299
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BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.370e-42
Identity = 90/161 (55.90%), Postives = 108/161 (67.08%), Query Frame = 1 
Query:  118 SRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNSHQVLARRLAIA*RAKSSGEIAG*DLHLVSLYLGQERLAERPLVRKWERDEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYMETKVAQ 600
            ++ VVLAMNA G   IC+LWFVC RQLRWVRKQFNEY+ M  TL C+TL+  SY  VV + L+N H V  RR+AI                +++ Y         P+ RK   D EYL+SFTKGFSE+PSPAQLKASLAEQLSV+QLR+EFR Y+ET VAQ
Sbjct:  123 AKNVVLAMNALGFYAICYLWFVCARQLRWVRKQFNEYEAMKWTLSCLTLLLFSYAAVVAIVLNNQH-VYVRRVAIV-------------YPVLTTYTLLWGSIGEPIKRKLAGDTEYLYSFTKGFSEMPSPAQLKASLAEQLSVQQLRVEFRKYVETMVAQ 269
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BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Match: A0A6H5KB09_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB09_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.390e-38
Identity = 91/198 (45.96%), Postives = 125/198 (63.13%), Query Frame = 1 
Query:    7 QIMLLSSPCLIPLLVALLVPGAYVFNETVNSCNTTNTSRTVVLAMNAFGCCIICFLWFVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNSHQVLARRLAIA*RAKSSGEIAG*DLHLVSLYLGQERLAERPLVRKWERDEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGYMETKVAQ 600
            QI+ +SS  LIP++ A  +P    F+E  N+C T + S  V+L MN  G  +I +LWFVC RQL+WVRKQFNEY  M  TLL +T+   SY +VV+  L ++  V +RR A+                +++ Y+        P ++K   ++EYL S+T GF++LPSPAQLKASLAEQLSV+QLR EFR Y++TKVAQ
Sbjct:   77 QILSMSSLSLIPVVAAWAIPNTGDFDEVENACFTLSVSTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADNVTV-SRRAALG-------------YPVMTTYILLWVSIREPFMKKILGNDEYLGSYTHGFAQLPSPAQLKASLAEQLSVDQLRDEFRRYIKTKVAQ 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12156.1821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FU00_ECTSI6.230e-12292.46Regulator of G-protein signaling 13 n=1 Tax=Ectoca... [more]
D7FTZ9_ECTSI4.350e-6864.14RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ6_ECTSI6.350e-6560.00Similar to regulator of G-protein signaling 16 n=1... [more]
A0A6H5JJQ0_9PHAE8.390e-6556.14RGS domain-containing protein n=3 Tax=Ectocarpus T... [more]
A0A6H5K025_9PHAE1.800e-5560.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0N5_9PHAE3.670e-5553.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ5_ECTSI9.490e-4850.75Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5KAT5_9PHAE3.040e-4449.25RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ7_ECTSI1.370e-4255.90Similar to regulator of G-protein signaling 16 n=1... [more]
A0A6H5KB09_9PHAE2.390e-3845.96RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12156contigEcto-sp13_S_contig12156:2692..5161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score137.9
Seed ortholog evalue2.9e-30
Seed eggNOG ortholog2880.D7FU04
Preferred nameRGS1
Model size600
KEGG koko:K16449
Hectar predicted targeting categorysignal peptide
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
Exons5
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-11_003420.1
Cds size336
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12156.1821.1prot_Ecto-sp13_S_contig12156.1821.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12156 2704..3481 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.0291395-UTR-Ecto-sp13_S_contig12156:2691..27031681462646.0291395-UTR-Ecto-sp13_S_contig12156:2691..2703Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12156 2692..2703 +
1681462646.0797596-UTR-Ecto-sp13_S_contig12156:3481..35651681462646.0797596-UTR-Ecto-sp13_S_contig12156:3481..3565Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12156 3482..3565 +
1681462646.093746-UTR-Ecto-sp13_S_contig12156:3890..39741681462646.093746-UTR-Ecto-sp13_S_contig12156:3890..3974Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12156 3891..3974 +
1681462646.117195-UTR-Ecto-sp13_S_contig12156:5077..51611681462646.117195-UTR-Ecto-sp13_S_contig12156:5077..5161Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12156 5078..5161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.0432756-CDS-Ecto-sp13_S_contig12156:2703..28671681462646.0432756-CDS-Ecto-sp13_S_contig12156:2703..2867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12156 2704..2867 +
1681462646.05704-CDS-Ecto-sp13_S_contig12156:3059..32291681462646.05704-CDS-Ecto-sp13_S_contig12156:3059..3229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12156 3060..3229 +
1681462646.0702367-CDS-Ecto-sp13_S_contig12156:3479..34811681462646.0702367-CDS-Ecto-sp13_S_contig12156:3479..3481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12156 3480..3481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12156.1821.1

>prot_Ecto-sp13_S_contig12156.1821.1 ID=prot_Ecto-sp13_S_contig12156.1821.1|Name=mRNA_Ecto-sp13_S_contig12156.1821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MLLSSPCLIPLLVALLVPGAYVFNETVNSCNTTNTSRTVVLAMNAFGCCI
ICFLWFVCVRQLRWVRKQFNEYKEMTLTLLCVTLISVSYTLVVVVALDNS
HQVLARRLAIA*
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mRNA from alignment at Ecto-sp13_S_contig12156:2692..5161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12156.1821.1 ID=mRNA_Ecto-sp13_S_contig12156.1821.1|Name=mRNA_Ecto-sp13_S_contig12156.1821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2470bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12156:2692..5161+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTATCAGATTATGTTGCTTTCGAGCCCCTGCCTGATTCCGCTGCTAGT
TGCCTTGCTTGTTCCCGGTGCCTACGTCTTCAACGAGACGGTCAACTCGT
GCAACACCACGAACACTTCGAGGACCGTGGTTTTGGCGATGAACGCCTTC
GGCTGCTGCATCATCTGCTTTCTTTGGTGGGTCTTAGGGGGGTTGATGTT
GACGTGAGCGGTAGGCTTATTGTAGATGTCGTGATCGTCTTTGTCGTCTT
CGTAGTCGTCGTCACTACTGCTGTTGCCGATTGTGATGTCTAAGGCGCGG
TGCCCTAGCCATCGCGTTCGTCCGCAAAACCCACGGTGTCCTACGTCCGG
TCCGGTGTCTCTTTTCAGGTTCGTGTGCGTCCGTCAGCTGAGGTGGGTCC
GCAAGCAGTTCAATGAATACAAGGAGATGACGCTGACCCTGCTGTGCGTT
ACTCTAATCTCGGTCAGCTACACGCTTGTGGTGGTCGTTGCCCTGGACAA
CAGCCACCAGGTACTCGCCAGAAGACTGGCCATCGCGTGTGAGTCGAGCC
TTTTGTTCTCTGTTTGGCTGCGTACCTGTTGTCGTTGCTGTTGCCGTTGC
CCTTGTTGTTGGACACGCGGATGGGGCAAAGTTTGTTCACCTGGCTTGAT
CGTATGTAGCGAGATGGGGGTCACCCTCAGTCCAATCGTATCACCTTGCC
GAACAGGACGAAATCCTCTTTGCTGCGTACATCGACGGAGCGAGTGCAGT
TGATTCTCGCTGTATTTGGCGGTACGCGTTCGCAGTAGAGAGAGCGAAGT
CATCGGGAGAGATCGCCGGATGAGACCTTCATCTGGTGTCCCTGTACCTC
GGACAGGAGCGATTGGCGGAGCGTGTGAGAGCAGAACATGGTGCCCCTTT
GAGCAGGACAAGCAAGATACCCTTTGTGCAGAGGGGGGTACGAGTAGACC
CTCCTCCGGGAACATCTTTTCGGTCTACATCGTCTTGGTTCGGGGCGATG
CAGATTCGGGCTCTCTGGGGGGAGGTTGACATCCGAAGGAGGTGAACTCA
GGCCTCCTATACTTGAAAGGGTGAAGGCTCGTCAATTTCAGCCCATAAAC
GCAAAATCCCCCCGGTTTCCTTTTCCTCCCGCAACATGCCATCGCTATGT
AGACCCCGTGCTAACGACGCATACCCTCCTTTGGGGCTCCATCGGCGAGC
CTTTGGTGAGGAAGTGGGAGAGAGACGAGGAATACCTGTGGTCGTTCACC
AAGGGCTTCTCGGAGCTACCTTCTCCGGCGCAGGTTAGTTTTGTCGGAAC
CATTCCTCGATGTTGTGTTTTCTCACATCGAATACGGTTTTTTCTCCTGC
CCAAAAGCATTTCCCGGGAACACTGTTCTGGTGTCGTTGCTTGATTTACC
AACCGAACGATTTAATGTGTGTAAAACGTGTCATCTTTTATTCTTGCCGC
CGCCGTCGTCATGCACACGGCTATAAAGTGAAAATGATCCCAGCGTTTGA
AGAGGTATGTAGATATGCCAGCGTTCTTTGTCGTCCGCGGGATTCGCCGA
TAGGAGGGTGGGCGGGCGTGTAGCGTAGGAGAGCATGGTGTGTTGGGAAA
ACGCATCGTGCGGAGATAGCCATTTCAGGAGCGATGCGACCATCGGGCAA
GAGTCAACACTCCCCGACGACTGCCGAGGATGTTTTCCTTCTGTTCGTGT
TGGCGTCGTCGTGGGATATGTTGTTTTGGTGGCGGATACTCCGGGTTCAA
AGTGCCTGCCACTCAAACACGGCGGCGAGCAAAGCACGGATTTCGAACTT
GGTATAAGGAGCGTTTGGTGATGTGACGGAGTACTTCACTCTTGAAACAT
GCACCATCAGACTCTGACAAGGTGACGAAATCAGCTCGCCACCAGCCGGT
CGGACTCCGATTGCCCCTACAGGGTTTTCTTGCGGGAAAACAAGAGAAGA
ACTTGCAAGAAAGGGGGGGGGGGGGGGCTGGGACGACGTTTTTGATGGAT
CACACCTCCCCCGTTTGTCGGAGATTTTTTCGCTGGCGATTGTTTTTGTT
GGGACTCGTATCCCTGCCTTCACCGAATCGTTGCTGCGGCGGATGTCCGC
CACGATAAATTACCGCACCTTAAAGTGTTAGTGGTTGGGGGTTGGGATGG
GGAGGGAAGGACTTCAGTAAGGATGATCTCCGTTAGAGAACGACACTTGC
CGTGTCCAAACTTGTCTTGCTGAGACATTCCTCGTATGCCACAGTGAGAG
ATGTTGTTGTTGACCGCGAAAGAACACGAGGTGCCAAACAGGACGTGCGG
TGCCCCGAGACACCGTTTTGTTTGTGCTGTGTATCGGTTGCGGTACAAAC
CCGCCCCCTGCGTCTCCCCTTCTTAAACCCCTTTAGCTCAAGGCTAGCTT
GGCGGAGCAGCTTTCTGTGGAGCAGCTGCGGATCGAGTTTCGGGGGTACA
TGGAGACCAAGGTGGCCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12156:2692..5161+

>mRNA_Ecto-sp13_S_contig12156.1821.1 ID=mRNA_Ecto-sp13_S_contig12156.1821.1|Name=mRNA_Ecto-sp13_S_contig12156.1821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12156:2692..5161+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCTTTCGAGCCCCTGCCTGATTCCGCTGCTAGTTGCCTTGCTTGT
TCCCGGTGCCTACGTCTTCAACGAGACGGTCAACTCGTGCAACACCACGA
ACACTTCGAGGACCGTGGTTTTGGCGATGAACGCCTTCGGCTGCTGCATC
ATCTGCTTTCTTTGGTTCGTGTGCGTCCGTCAGCTGAGGTGGGTCCGCAA
GCAGTTCAATGAATACAAGGAGATGACGCTGACCCTGCTGTGCGTTACTC
TAATCTCGGTCAGCTACACGCTTGTGGTGGTCGTTGCCCTGGACAACAGC
CACCAGGTACTCGCCAGAAGACTGGCCATCGCGTAG
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