mRNA_Ecto-sp13_S_contig12149.1817.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12149.1817.1
Unique NamemRNA_Ecto-sp13_S_contig12149.1817.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12149.1817.1 vs. uniprot
Match: A0A6H5L016_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L016_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.440e-43
Identity = 89/104 (85.58%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:   43 RDDPPVEKNEDEKEPLPPFTMALAVMLTGLRVLIVDQVLGLHLPVMKLCLASVSCVIENRLESEDNELERRLLRGRRPSSSSS------GRHGGSEAAPPGFRP 336
            RDDPPVE NEDEKEPLPPFTMALAVMLTGLRVLIVDQVLGLHLPVMKLCLASVSCVIENRLESEDNELERRLLRGRRPSS          RHG  EAAPP  RP
Sbjct:  507 RDDPPVETNEDEKEPLPPFTMALAVMLTGLRVLIVDQVLGLHLPVMKLCLASVSCVIENRLESEDNELERRLLRGRRPSSXXXXXXXXXARHGRGEAAPPDVRP 610
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BLAST of mRNA_Ecto-sp13_S_contig12149.1817.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 7.680e-43
Identity = 86/98 (87.76%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:   43 RDDPPVEKNEDEKEPLPPFTMALAVMLTGLRVLIVDQVLGLHLPVMKLCLASVSCVIENRLESEDNELERRLLRGRRPSSSSSGRHGGSEAAPPGFRP 336
            RDDP        +EPLPPFTMALAVMLTGLRVLIVDQVLGLHLPVMKLCLASVSCVIENRLESEDNELERRLLRGRRPSSSS GRHGG EAAPPG RP
Sbjct: 3775 RDDPXXXXXXXXEEPLPPFTMALAVMLTGLRVLIVDQVLGLHLPVMKLCLASVSCVIENRLESEDNELERRLLRGRRPSSSSPGRHGGGEAAPPGVRP 3872
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12149.1817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L016_9PHAE5.440e-4385.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8Y9_ECTSI7.680e-4387.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12149contigEcto-sp13_S_contig12149:813..1447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score160.6
Seed ortholog evalue4.2e-37
Seed eggNOG ortholog2880.D7G8Y9
Model size338
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
Cds size336
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462645.690308-CDS-Ecto-sp13_S_contig12149:812..9651681462645.690308-CDS-Ecto-sp13_S_contig12149:812..965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12149 813..965 +
1681462645.7021966-CDS-Ecto-sp13_S_contig12149:1262..14451681462645.7021966-CDS-Ecto-sp13_S_contig12149:1262..1445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12149 1263..1445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12149.1817.1prot_Ecto-sp13_S_contig12149.1817.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12149 813..1445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12149.1817.1

>prot_Ecto-sp13_S_contig12149.1817.1 ID=prot_Ecto-sp13_S_contig12149.1817.1|Name=mRNA_Ecto-sp13_S_contig12149.1817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
AAAAAAAAASETGSRDDPPVEKNEDEKEPLPPFTMALAVMLTGLRVLIVD
QVLGLHLPVMKLCLASVSCVIENRLESEDNELERRLLRGRRPSSSSSGRH
GGSEAAPPGFRP
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mRNA from alignment at Ecto-sp13_S_contig12149:813..1447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12149.1817.1 ID=mRNA_Ecto-sp13_S_contig12149.1817.1|Name=mRNA_Ecto-sp13_S_contig12149.1817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=635bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12149:813..1447+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCAGCGGCGGCGGCGGCGGCGGCGAGTGAGACCGGGAGCAGAGACGA
TCCTCCAGTGGAGAAGAACGAGGACGAGAAGGAGCCGCTCCCGCCGTTCA
CGATGGCCCTCGCGGTGATGCTGACGGGGCTGCGGGTGCTCATCGTTGAC
CAGGTGCGGGGTAGCGCCGGGCGACTCGGTTTGATGTTTTTGGTTGTCCT
CTCCAGGGACGGTCAGTCGGTGTGTAATCGTCCACCGAACTATCGCGACG
AGACCCGCAGCAAACTTGAATGGTTAGTTGCGAATTATGGGTGAGAGACG
ACGGCGTGGGTGTATTTTATTTTTGGTTGTTGCTCATCACCAATTGTAAA
TGGTTAGATCCTCGTTGCATAGATAACAAGAAGCCCTTTGGGTGTGGACC
CGCGCGACAACTACGTCCGTCAAATGCCGCTGCGGTCGGTCTCCTTTCAG
GTGCTCGGGCTGCACCTCCCCGTGATGAAGCTCTGCCTCGCCAGCGTGTC
TTGCGTTATCGAGAACCGTCTCGAGAGCGAGGACAACGAGCTAGAGCGCC
GCCTACTTCGGGGACGGAGGCCGTCATCGTCATCATCCGGCCGACACGGC
GGCAGCGAAGCCGCCCCGCCGGGCTTTCGCCCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12149:813..1447+

>mRNA_Ecto-sp13_S_contig12149.1817.1 ID=mRNA_Ecto-sp13_S_contig12149.1817.1|Name=mRNA_Ecto-sp13_S_contig12149.1817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12149:813..1447+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCAGCGGCGGCGGCGGCGGCGGCGAGTGAGACCGGGAGCAGAGACGA
TCCTCCAGTGGAGAAGAACGAGGACGAGAAGGAGCCGCTCCCGCCGTTCA
CGATGGCCCTCGCGGTGATGCTGACGGGGCTGCGGGTGCTCATCGTTGAC
CAGGTGCTCGGGCTGCACCTCCCCGTGATGAAGCTCTGCCTCGCCAGCGT
GTCTTGCGTTATCGAGAACCGTCTCGAGAGCGAGGACAACGAGCTAGAGC
GCCGCCTACTTCGGGGACGGAGGCCGTCATCGTCATCATCCGGCCGACAC
GGCGGCAGCGAAGCCGCCCCGCCGGGCTTTCGCCCC
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