mRNA_Ecto-sp13_S_contig12135.1813.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12135.1813.1
Unique NamemRNA_Ecto-sp13_S_contig12135.1813.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12135.1813.1 vs. uniprot
Match: A0A6H5KX64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX64_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.720e-57
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 2 
Query:    2 MQHVYGKEPERQVSRMLGVKQPTADVAAVLLKYGVAAEHFCFARFLKLSRNPPPHPALAAVALAASSESAKIAEDMXXXXXXXXXXXXXXXMAFEAAGLSGALSPTSVPPQQEAGSATSGDGDE 373
            MQHVYGKEPERQVSRMLGVKQPTADVAAVLLKYGVAAEHFC+ARFLKLSRNPPPHPALAAVALAASSESAKIAEDMXXXXXXXXXXXXXX MAFEAAGLSG LSPTSVPPQQE GSATSG+G+E
Sbjct:   41 MQHVYGKEPERQVSRMLGVKQPTADVAAVLLKYGVAAEHFCYARFLKLSRNPPPHPALAAVALAASSESAKIAEDMXXXXXXXXXXXXXXAMAFEAAGLSGVLSPTSVPPQQEVGSATSGNGNE 164
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BLAST of mRNA_Ecto-sp13_S_contig12135.1813.1 vs. uniprot
Match: D7G392_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G392_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.870e-51
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 2 
Query:    2 MQHVYGKEPERQVSRMLGVKQPTADVAAVLLKYGVAAEHFCFARFLKLSRNPPPHPALAAVALAASSESAKIAEDMXXXXXXXXXXXXXXXMAFEAAGLSGALSPTSVPPQQEAGSATSGDGDE 373
            MQHVYGKEPERQVSRMLGVKQPTADVAAVLLKYGVAAEHFC+ARFLKLSRNPPPHPALAAVALAASSESAKIAEDMXXXXXXXXXXXXXXXMAFEAAGLSGALSPTSV PQQEA SATSGDGDE
Sbjct: 1317 MQHVYGKEPERQVSRMLGVKQPTADVAAVLLKYGVAAEHFCYARFLKLSRNPPPHPALAAVALAASSESAKIAEDMXXXXXXXXXXXXXXXMAFEAAGLSGALSPTSVLPQQEARSATSGDGDE 1440
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12135.1813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX64_9PHAE1.720e-5795.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G392_ECTSI1.870e-5197.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12135contigEcto-sp13_S_contig12135:2004..4135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1076
Hectar predicted targeting categoryother localisation
Exons3
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462645.3946989-UTR-Ecto-sp13_S_contig12135:2003..25921681462645.3946989-UTR-Ecto-sp13_S_contig12135:2003..2592Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12135 2004..2592 -
1681462645.4358513-UTR-Ecto-sp13_S_contig12135:4134..41351681462645.4358513-UTR-Ecto-sp13_S_contig12135:4134..4135Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12135 4135..4135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462645.4043698-CDS-Ecto-sp13_S_contig12135:2592..29291681462645.4043698-CDS-Ecto-sp13_S_contig12135:2592..2929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12135 2593..2929 -
1681462645.4137642-CDS-Ecto-sp13_S_contig12135:3328..34411681462645.4137642-CDS-Ecto-sp13_S_contig12135:3328..3441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12135 3329..3441 -
1681462645.4273586-CDS-Ecto-sp13_S_contig12135:4098..41341681462645.4273586-CDS-Ecto-sp13_S_contig12135:4098..4134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12135 4099..4134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12135.1813.1prot_Ecto-sp13_S_contig12135.1813.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12135 2593..4134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12135.1813.1

>prot_Ecto-sp13_S_contig12135.1813.1 ID=prot_Ecto-sp13_S_contig12135.1813.1|Name=mRNA_Ecto-sp13_S_contig12135.1813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
MQHVYGKEPERQVSRMLGVKQPTADVAAVLLKYGVAAEHFCFARFLKLSR
NPPPHPALAAVALAASSESAKIAEDMAKVAAESAQVAAESAMAFEAAGLS
GALSPTSVPPQQEAGSATSGDGDESHAAAGENEEGSSPRSRSSAGASCPS
PSGSGEEDGGT*
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mRNA from alignment at Ecto-sp13_S_contig12135:2004..4135-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12135.1813.1 ID=mRNA_Ecto-sp13_S_contig12135.1813.1|Name=mRNA_Ecto-sp13_S_contig12135.1813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12135:2004..4135- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCAGCACGTGTACGGCAAGGAACCGGAGCGCCAGGTTAGACTCCAGC
GGTCTCATTCTATCAAGTCTTCGATCAAGAGAAAACGCTTTTGAGCTGAG
CTGGGGACGTGCTCTCGTATAGACCCTGCCATCACGACGACCTTCGTTTG
CTTGTACCCAAGCTTTAGTTGCCGGGCACAGCGTTGAACGCGAAAATAGC
GTACGTATGGAGGTCAGCGTGTTGTGGGCATGATGGCGTTGATACCGTGT
CGCAAGACTCCCTGTTGTTTGTTCCCGCTATTAATACATTTTCGAACCGA
CGAGGGCGGCCAGACACGTAAACGTATTTCCCGGCGTTATTTTGCCGCAG
CGAATATCAGATTACTAATGCAAGTGAAGAGGTTCGCCCCATTTCCATCA
GATCACGTGCCAGTGGCTTCGATGGGCCCGGTCGGCCATTTCGTCACTCA
AGATTGGTGGCACGACTAATTGGGAGGAGGTAGACCCAGGCTGTAATTTT
AGCCTCCATCCCCAGTATTGAGTCCTGTTGAACAAAGGGCCCGCATACAA
GTGATGATACCGACGCGAAACGCAGAAACCACATCACCCACGGGTTACGC
CTGGTATGGCTTCAGGCAATCAACAAGCACATCTCGCCGACCCCCGGCCC
GGCTTTCTGCGCTTCGTCGCTTGCGTCCATCTCCTAACGAACAGGTTTCC
CGGATGCTGGGCGTTAAGCAGCCCACGGCAGACGTGGCGGCAGTGCTTCT
CAAGTACGGAGTGGCAGCCGAACACTTTTGCTTCGCTCGATTCCTCAAAC
TGAGCAGGTGCGCACAACCGTCGCAGATTTACACTCGTTTTCCTACCGGT
TGGCGGGTGGAAGGGACGCGCCAGCACGAACGCGTTCTGCTTGCCCAATA
TGTTGACATGCTTGACATGCGCTTCCACGATCTCTCCTCGGCGACGTTGC
GCCGGTTGGGGTTGTTTCTGCGTTGAGCCCCGAATTCCATGAGCTTCACG
GGGATGGACGTATTTGCCCGGCGTTTCCGCGTCCCTCCTTTCGTCTGGCC
TTGGCGATGAAGTTTCCCAAGTGGTTGCTCTAACCTGTGATTTTCGTCCT
CTTCCACTCATCCCTCAGTACCCTATTCTCGGTTGTTCCAGTCACCCAAA
TAGGATGCCTCATTTGTTCTGAATTGGGGACGACGACATCGCATCTGTCT
CTGCAGGAATCCACCTCCACATCCCGCGCTAGCGGCCGTTGCCCTTGCGG
CATCGTCCGAGTCAGCCAAGATCGCGGAAGACATGGCCAAAGTTGCGGCG
GAGTCGGCCCAAGTGGCCGCGGAGTCCGCGATGGCCTTCGAGGCCGCGGG
TCTCTCGGGAGCGTTGTCACCCACGAGCGTTCCTCCCCAGCAGGAGGCAG
GTAGCGCTACGTCTGGAGATGGGGACGAATCTCACGCAGCAGCGGGTGAA
AACGAGGAGGGCTCATCGCCAAGATCGAGGTCAAGCGCCGGCGCTTCATG
TCCATCGCCGTCGGGGAGTGGAGAAGAAGATGGTGGGACATAGGCTGGAA
TGAAGACATGGTGGTGCTGTGTTGTGGAGTTGTTTTGGGAGCAACGAGCA
AAAGATAACAGAGACGGGATTCGCCGTTGCTTCGGCAGCGGGAGGATTTG
CGTCGCCGGGATATGTGGAGCAGACCGCTTGTAGGTGGCTACATCCCGAG
GGCATTGGCATGCGTATCATAGAGGAGGCGGAGGTGTGTTATCTCCATGG
TTCTGTGCGATTCGTTTGTCAGGTGTGTTGTTGTCGTATGTGCAGACCAA
GCCTCTCCTCGCTTTCGAAGGGGGAGACATCGTACGTGGAGCTTCCAAGT
CCACCAACAGTTAGTTTCATATTGCCCCGAGCATGGACCCCGCGTCCACG
GTGAAACGGTGCAATGCGCTGACAGTGGAATCCACTCCTCGTGGATGTAC
CAGATATTTGACCGTTCTCCTGGGCCTGGAATCGGTCAGGGAAATTTCAA
GAGACGCCACAAGGTGCGGCTTTCACCTTCGGTGGAAGTGTCGTATATCT
TTTTACACGGCTCGAGGGTGCATTGATCGGAGGGGTAGAGAGCGTGTTCA
TGGATGTATAGCTTGCACAAGCCAAGCTGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12135:2004..4135-

>mRNA_Ecto-sp13_S_contig12135.1813.1 ID=mRNA_Ecto-sp13_S_contig12135.1813.1|Name=mRNA_Ecto-sp13_S_contig12135.1813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12135:2004..4135- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCACGTGTACGGCAAGGAACCGGAGCGCCAGGTTTCCCGGATGCT
GGGCGTTAAGCAGCCCACGGCAGACGTGGCGGCAGTGCTTCTCAAGTACG
GAGTGGCAGCCGAACACTTTTGCTTCGCTCGATTCCTCAAACTGAGCAGG
AATCCACCTCCACATCCCGCGCTAGCGGCCGTTGCCCTTGCGGCATCGTC
CGAGTCAGCCAAGATCGCGGAAGACATGGCCAAAGTTGCGGCGGAGTCGG
CCCAAGTGGCCGCGGAGTCCGCGATGGCCTTCGAGGCCGCGGGTCTCTCG
GGAGCGTTGTCACCCACGAGCGTTCCTCCCCAGCAGGAGGCAGGTAGCGC
TACGTCTGGAGATGGGGACGAATCTCACGCAGCAGCGGGTGAAAACGAGG
AGGGCTCATCGCCAAGATCGAGGTCAAGCGCCGGCGCTTCATGTCCATCG
CCGTCGGGGAGTGGAGAAGAAGATGGTGGGACATAG
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