mRNA_Ecto-sp13_S_contig12132.1812.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12132.1812.1
Unique NamemRNA_Ecto-sp13_S_contig12132.1812.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12132.1812.1 vs. uniprot
Match: D8LQE0_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE0_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 2.630e-93
Identity = 163/189 (86.24%), Postives = 168/189 (88.89%), Query Frame = 3 
Query:  738 NGYHGRPSHAGSSDGGRGGADTAEIDAAPELPEEPTEFPSPLAQDAACTATATGTHDGAQYTSDITPVVKSELRLVRRAMPDKDFSAHLVEGSDLDQPSLRLFKVGADDNDPTKAKKAILLVKGTSVEPTSHNGSTDRFVVKTPQGVWSFRASDTKNRDAWVNAIRSVRRVRSNAGHDTDGGGGKSSGN 1304
            NGYHGRPSHA SSDG  GGA+ A ID+APELPE+P E P PLAQDAA T TA GT+DGAQYTSDITPVVKSELRLVRR MPDKDFSAHLVEG  LDQPSLRLFKVGAD ND  KAKK ILLV GTSVEPTSH GSTDRFVVKTP+GVWSFRASDTKNRDAWVNAIRSVRRVRSNAGHDTDGGG KSSGN
Sbjct:  255 NGYHGRPSHADSSDGDGGGANAAGIDSAPELPEKPIEVPRPLAQDAARTTTAIGTNDGAQYTSDITPVVKSELRLVRRTMPDKDFSAHLVEGRGLDQPSLRLFKVGADANDAGKAKKVILLVGGTSVEPTSHKGSTDRFVVKTPKGVWSFRASDTKNRDAWVNAIRSVRRVRSNAGHDTDGGG-KSSGN 442
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12132.1812.1 vs. uniprot
Match: D8LQD1_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD1_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 5.470e-48
Identity = 89/100 (89.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:  871 MPRAPPPLPEHTTAHSTPQTSHLWSSPSCGSSGGRCRTRTSPPTSWKEVTSTSRLSDCSRSARTTMIPPKPRRRFFSSRVRLLSRPPTMAPPTASWSKPL 1170
            MPRAPPPL   TTAH+TPQTSHLW SPSCGSSGGRCRTRTSPPTSWKEV STSRLSDCSRSARTTM PPKPRR FFSS VRLLSRPPT APPTASWS+PL
Sbjct:    1 MPRAPPPLSGQTTAHNTPQTSHLWPSPSCGSSGGRCRTRTSPPTSWKEVASTSRLSDCSRSARTTMTPPKPRRSFFSSGVRLLSRPPTKAPPTASWSRPL 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12132.1812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQE0_ECTSI2.630e-9386.24PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
D8LQD1_ECTSI5.470e-4889.00PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12132contigEcto-sp13_S_contig12132:691..5168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1304
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-10_005180.3
Cds size1086
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12132.1812.1prot_Ecto-sp13_S_contig12132.1812.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12132 829..5088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462645.2941527-UTR-Ecto-sp13_S_contig12132:690..8281681462645.2941527-UTR-Ecto-sp13_S_contig12132:690..828Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12132 691..828 +
1681462645.3651128-UTR-Ecto-sp13_S_contig12132:5088..51681681462645.3651128-UTR-Ecto-sp13_S_contig12132:5088..5168Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12132 5089..5168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462645.3031278-CDS-Ecto-sp13_S_contig12132:828..8311681462645.3031278-CDS-Ecto-sp13_S_contig12132:828..831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12132 829..831 +
1681462645.3111498-CDS-Ecto-sp13_S_contig12132:1742..23661681462645.3111498-CDS-Ecto-sp13_S_contig12132:1742..2366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12132 1743..2366 +
1681462645.3192894-CDS-Ecto-sp13_S_contig12132:3162..33441681462645.3192894-CDS-Ecto-sp13_S_contig12132:3162..3344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12132 3163..3344 +
1681462645.329771-CDS-Ecto-sp13_S_contig12132:3564..37051681462645.329771-CDS-Ecto-sp13_S_contig12132:3564..3705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12132 3565..3705 +
1681462645.346812-CDS-Ecto-sp13_S_contig12132:4019..41031681462645.346812-CDS-Ecto-sp13_S_contig12132:4019..4103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12132 4020..4103 +
1681462645.3573267-CDS-Ecto-sp13_S_contig12132:5036..50881681462645.3573267-CDS-Ecto-sp13_S_contig12132:5036..5088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12132 5037..5088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12132.1812.1

>prot_Ecto-sp13_S_contig12132.1812.1 ID=prot_Ecto-sp13_S_contig12132.1812.1|Name=mRNA_Ecto-sp13_S_contig12132.1812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=362bp
MVPTETKEESAIGTAAATASPTAAPATDADAYHTTNAPISATIPVFAELT
EGMNGTDLGLTTATTTTATTTTEEGITNPRDTLAGSPEVLAAAADAAADP
AIVPTGPLVPGTTTTSAEAENTTTHPSSDPAASAIDKNVADPLNGSDDIA
SQEEPTAAAPAAAPRRLRHRRQGQYYHNRCLKNYWAVGSHQSTDGSNSNA
TGIMVVHRMLVQVTAVGAAQIPLRLMLRRSCPKSRPSFPAPWHKMPRAPP
PLPEHTTAHSTPQTSHLWSSPSCGSSGGRCRTRTSPPTSWKEVTSTSRLS
DCSRSARTTMIPPKPRRRFFSSRVRLLSRPPTMAPPTASWSKPLRVCGRS
VLPTPRTGMPG*
back to top

mRNA from alignment at Ecto-sp13_S_contig12132:691..5168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12132.1812.1 ID=mRNA_Ecto-sp13_S_contig12132.1812.1|Name=mRNA_Ecto-sp13_S_contig12132.1812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4478bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12132:691..5168+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAACTGGTTGCTGTTTGTTGTTGGTGCTTCTTGGGGCTCTGCTCCTGGG
GTCAGCGAACGGCAACAACAACAGCAACAACAACAGCAACGACACGACCA
GCGTGAATGACGACGACCGCAGCTCCAGCACCGACGGCATGGTGAGTATT
GAGCCGTTGCGTGCTTTCTTCCAGAAATTGATCACTGCCGGTCCTCCTCC
GCCCTTCGGCAGCGAACGTGCCTCCGCAACCCCCTTCTCGTCCCCCGCCG
TTCACCTGCACTTTCAAAAAGGGCAATAGGTAGAGGGGTCACCGCGGCGG
TGGGAGACGCGAATGATCACGCTCACCTGTGTGGTGGATGGCCCCCCGGG
GGAGTCAATACCACACGGCGTCGTCTCTGAGAAACCTTATTCGCAGAGAC
GACGAATATATACTTGACTCAGTGTTGCTGACCATGAAGGTGTCACTAAA
AATGATGTTCGCTTCCACGAGGCTAAAGCTCCTTGTTGTGGTTGACAAAA
GTGATGCGCTCAACAGCGGGCGCGCACAAGATGATTTCTGCACGTCCATC
TCCTAGCACACCATCACTGACCACAAGGGCTTAGCCATAAACATACCTCT
GGTAGACCAGAACAGCAGTAAGCAGTGACGCAAACGTCATGGTAAGCAAC
ACTGAGGCGATTTTGTTTTTGCGAACAACGTTGTTCGGCATTGACATCCC
CGGGGGGCAATCCAACGAATCCGCGTTTGACAGGTTTTGCGAGAAAAGAC
ACTCCGTGCACGGCGAATCCTAGCTGTACCTGGCTTGTTCTTGTAGGACC
GGGGGGGGGGCAACCAGACGGGCGTTATTTCCTCACAGAAAAGGTCCTAA
TCTCTGGCCCCGACGACGACTGTTCACCGTATTCCTCAACCTACCATTTT
TACCGCTCCGCTCCTCTCCTCCGTCCACCGTATCGGTGTAGTCTACACAT
ACAGCGAGCCTTGAACCTGACGTCGTGTCCAAGATCAACAAGATCTCCGT
GATCAACACCAACGACACGGCTGACGTTTCAGTTTCTCCCACGCTCCCTC
AGGTGCCTACAGAAACGAAGGAGGAATCGGCGATTGGCACGGCCGCTGCT
ACTGCCTCCCCTACCGCCGCCCCTGCTACGGACGCCGATGCCTACCACAC
AACCAACGCTCCGATCTCTGCCACGATCCCCGTGTTTGCTGAGCTAACGG
AGGGGATGAACGGAACCGACCTGGGCTTGACCACGGCAACGACCACCACC
GCCACCACCACCACTGAGGAAGGGATCACCAACCCCAGAGACACCTTGGC
CGGTTCACCCGAGGTGCTCGCTGCGGCCGCCGACGCCGCCGCCGATCCTG
CGATTGTTCCGACGGGGCCTCTCGTTCCGGGAACAACGACAACCAGTGCC
GAGGCCGAAAACACTACAACCCACCCCAGCTCCGATCCCGCAGCTTCTGC
TATCGACAAAAACGTGGCCGATCCTTTGAATGGCTCTGATGACATAGCTT
CACAGGAAGAACCCACGGCCGCCGCCCCCGCCGCGGCCCCCCGCCGCCTT
CGCCACCGCCGCCAAGGTCAGTACTACCACAATCGATGCCTCAAAAACTA
TTGGGCAGTGGGGAGTCATCAGAGCACAGACGGATCCAACAGCAACGCAA
CGGGTATCATGGTCGTCCATCGCATGGTACGTGGCAGATTCTTTCTCGTT
TTTCGGGCTCAGTACGCAATGCGTTGGTAGGCTGTTTCGAGAGCGATGGA
CGAGAGGAGGGCGTAGAGATAAATAGAAGGGTAGTTGGGTGATTCTTGTT
GAATTCCGTTGGTCTCTTGTTTGGACTACGCTACTACATTGTCTCCTTGG
TTGGCGAATGCCTCAACTAAGCATTACTTGCTTGTTGTGTCCGCGTCGTC
TTCTTCGCCGTGAAGGCAACGGTCGCCATGCGCACGCCCATCGCTCAAAC
CGCGTTCCTATCTTGCTAATGTCGTTTCCCTGAGTCTTGAGGGTGTGCCT
TGCTTCGGTTGGAGATTAAACCGCGCCTCTAAACCCCTGCTCGTCAAAAA
CGTCCCACGGTGGAATAACCCAGTGGAAAGTTCATCGGTTCCAGCACAGG
TCGATCTGTCCTTGAAGGGGTCGACGCTTAGCCACTCCGATCATTACCTT
AGTTGCACTTCTCAAATATATTTGGTGCTTCCCCAAGGTCTTTCCATCCT
TTCGTCTCCTCGCCATTATGTGGTGCTTGAAACCGCTAGCCACCCTCTTC
AACGTCTCAAAGAGGCAAAACGGTGAGACGATCCTTGTCCGCTGCCACAA
TAGTGTTGTATCATAGCGCTACCTTAGCAAACAGAGCAAGCGACTTTCAG
CAATCAAGCGGCTTGCTAGTCGGACATGTTGTTGATGCATTGAGGGGGGC
AAGCCCGAAAACAACGAAAGCCTCTACCGAAAGTAAGCAAGATGAACCCC
CCCCTGTCCACTACCGCTGCAGCTGGTTCAAGTGACGGCGGTAGGGGCGG
CGCAGATACCGCTGAGATTGATGCTGCGCCGGAGCTGCCCGAAGAGCCGA
CCGAGTTTCCCAGCCCCCTGGCACAAGATGCCGCGTGCACCGCCACCGCT
ACCGGAACACACGACGGCGCACAGTACACCTCAGACATCACACCTGTGGT
CAAGGTGAGGGTTGTTCGATTCCTGAGAAGCGTCTCTTTCGCTCCGCTAT
CGGTACCCCATCTCTGCGCGCTGTTGTTGTAAAACGCAAACACTCAGGCT
CACTCCCGTGATACAGCCATTTGGGGGTGTTTCTGTCGCGTCTCCATTCT
CAGTGGACGCTTGGTGTCGCTCTTGACTTCTGCCATCGTGCTGCGTTGAC
GCTCCTTCTTACCTGATACTGTAGTCCGAGCTGCGGCTCGTCAGGAGGGC
GATGCCGGACAAGGACTTCTCCGCCCACCTCGTGGAAGGAAGTGACCTCG
ACCAGCCGTCTCTCAGATTGTTCAAGGTCGGCGCGGACGACAATGATCCC
ACCAAAGCCAAGAAGGTGCAGCGAACAGCATGTACCTGTTGGCTCGCGCT
GGCATTGCAGAGACTACGCACAGCCGATTAGAAAATCTAGCGGTTTGTTG
GACCAGTCCCTACCAGCGGCATGTTTGTGTTGGTGCGTAACCCTTCCTAC
TTTGCACTTATCTTGGACTGTCACCCCTCCCTCCGTATTTGCATTGTTGT
TGCTGTGTCCTATACGGCGCCGCTGCTGCTCTGATTTCTGTTTCCGGTGT
TGTTTGCGCGCCCTGCCCGTGTCTCCTCGCACCCCGACTATTCGCTGCTT
GTTGTGCCCTACCGCCTCAATCAAAGCAGGCGATTCTTCTCGTCAAGGGT
ACGTCTGTTGAGCCGACCTCCCACAATGGCTCCACCGACCGCTTCGTGGT
CAAAACCCCTCAGGTGAGAAGCAGCACGCTGCGTTCTTTACGAACGTACC
CACACCGTAGTGAGTGATGGAAAGAACCGCTAGACGCTTGGACGTATTCT
CTCCCTCTGCGTACTTGATTGTCACGTAAGCGCCTACTTCGCCCACTCCT
AGTACCAACTTTGAACAATGCTTCACAAGTCGAAGCAATGTTTTTCTCAG
TCCAAAAAGGAGAAAAATACAGTCCAAAACAGAATGCGTTGCTCCGCACC
ATTTGTCTGGACCGCATGATGTGAGCGAGGTACTGGCGGTCTTCGATGCT
GCCTATCGTCGAAACGCCAGAAGTGCCACCCTCTTGAGTTGTTTCATGTA
TTCGACCGAAAGTACGGTGAACACGTGGATACCTTGAATACTGCCCTGTT
TCCCTGACAGTCCCGATCGACCCTTACCCCGTCTTACCCTCTCAGATGAT
TTACCCCAGCATCGTTGTTGTTTATTCGGGCTAAGGAGGACACCTGCAAC
TTATCAAATCAAACACGTGTGGTCATAGGAAGCTTTGTGCACCTGAACAC
AATACAGCTGTATTCCCGTAGCACGTGACTTCGAATCGAAGGAATAGATG
TAGGTACATGTCGGTACTTGTTTGTCGTTGTTGCTCTTGTTGGTCTCCAC
TGGCGGCAGGAGCAGTGCGGTGCGCATCCGGGAGGGGGGTGTTCCATTCG
CCTTATTTATTCAGAACAGTCTCCCGGCTCTCCGCAGTACTGTTTTGACC
ATCACTCCACGTTGCCCGCTCTCTCGAATCACCCCCCAGTCACCCGCTGG
AAATGAACCACATTTTTCCTCGTCTCCGTCTGGGGTGGGTTCTCTCGCGC
ATTTTCATGGAAAGCTCCACGGTTTCAACGCCCCAGTCAACTTATCGCCC
GTTCCACGTGGCCCCGTGACCTTCTGCCGATTCCTTCCTGCACCAGGGTG
TGTGGTCGTTCCGTGCTTCCGACACCAAGAACCGGGATGCCTGGGTAAAC
GCCATCAGGAGCGTTCGGAGAGTCAGAAGTAACGCTGGTCACGATACCGA
TGGCGGCGGCGGCAAGAGCAGCGGCAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12132:691..5168+

>mRNA_Ecto-sp13_S_contig12132.1812.1 ID=mRNA_Ecto-sp13_S_contig12132.1812.1|Name=mRNA_Ecto-sp13_S_contig12132.1812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12132:691..5168+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCCTACAGAAACGAAGGAGGAATCGGCGATTGGCACGGCCGCTGC
TACTGCCTCCCCTACCGCCGCCCCTGCTACGGACGCCGATGCCTACCACA
CAACCAACGCTCCGATCTCTGCCACGATCCCCGTGTTTGCTGAGCTAACG
GAGGGGATGAACGGAACCGACCTGGGCTTGACCACGGCAACGACCACCAC
CGCCACCACCACCACTGAGGAAGGGATCACCAACCCCAGAGACACCTTGG
CCGGTTCACCCGAGGTGCTCGCTGCGGCCGCCGACGCCGCCGCCGATCCT
GCGATTGTTCCGACGGGGCCTCTCGTTCCGGGAACAACGACAACCAGTGC
CGAGGCCGAAAACACTACAACCCACCCCAGCTCCGATCCCGCAGCTTCTG
CTATCGACAAAAACGTGGCCGATCCTTTGAATGGCTCTGATGACATAGCT
TCACAGGAAGAACCCACGGCCGCCGCCCCCGCCGCGGCCCCCCGCCGCCT
TCGCCACCGCCGCCAAGGTCAGTACTACCACAATCGATGCCTCAAAAACT
ATTGGGCAGTGGGGAGTCATCAGAGCACAGACGGATCCAACAGCAACGCA
ACGGGTATCATGGTCGTCCATCGCATGCTGGTTCAAGTGACGGCGGTAGG
GGCGGCGCAGATACCGCTGAGATTGATGCTGCGCCGGAGCTGCCCGAAGA
GCCGACCGAGTTTCCCAGCCCCCTGGCACAAGATGCCGCGTGCACCGCCA
CCGCTACCGGAACACACGACGGCGCACAGTACACCTCAGACATCACACCT
GTGGTCAAGTCCGAGCTGCGGCTCGTCAGGAGGGCGATGCCGGACAAGGA
CTTCTCCGCCCACCTCGTGGAAGGAAGTGACCTCGACCAGCCGTCTCTCA
GATTGTTCAAGGTCGGCGCGGACGACAATGATCCCACCAAAGCCAAGAAG
GCGATTCTTCTCGTCAAGGGTACGTCTGTTGAGCCGACCTCCCACAATGG
CTCCACCGACCGCTTCGTGGTCAAAACCCCTCAGGGTGTGTGGTCGTTCC
GTGCTTCCGACACCAAGAACCGGGATGCCTGGGTAA
back to top