mRNA_Ecto-sp13_S_contig12131.1811.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12131.1811.1
Unique NamemRNA_Ecto-sp13_S_contig12131.1811.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12131.1811.1 vs. uniprot
Match: D7FLC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC4_ECTSI)

HSP 1 Score: 496 bits (1278), Expect = 1.590e-169
Identity = 243/245 (99.18%), Postives = 244/245 (99.59%), Query Frame = 1 
Query:    1 QYNLPPEYTRQGTPCMDPNTFNANSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRAEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDE 735
            QYNLPPEYTRQGTPCMDP+TFN NSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRAEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDE
Sbjct:  251 QYNLPPEYTRQGTPCMDPSTFNGNSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRAEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDE 495
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BLAST of mRNA_Ecto-sp13_S_contig12131.1811.1 vs. uniprot
Match: A0A6H5J9Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z1_9PHAE)

HSP 1 Score: 491 bits (1264), Expect = 1.980e-165
Identity = 241/245 (98.37%), Postives = 241/245 (98.37%), Query Frame = 1 
Query:    1 QYNLPPEYTRQGTPCMDPNTFNANSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRAEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDE 735
            QYNLPPEY RQGTPCMDPNTFN NSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQR EILSFFLVGI EDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDE
Sbjct:  592 QYNLPPEYIRQGTPCMDPNTFNTNSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRGEILSFFLVGICEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDE 836
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12131.1811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLC4_ECTSI1.590e-16999.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9Z1_9PHAE1.980e-16598.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12131contigEcto-sp13_S_contig12131:88..5169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size735
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_007620.1
Cds size735
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12131.1811.1prot_Ecto-sp13_S_contig12131.1811.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12131 88..5169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462645.1835904-CDS-Ecto-sp13_S_contig12131:87..1681681462645.1835904-CDS-Ecto-sp13_S_contig12131:87..168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12131 88..168 +
1681462645.196014-CDS-Ecto-sp13_S_contig12131:695..8441681462645.196014-CDS-Ecto-sp13_S_contig12131:695..844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12131 696..844 +
1681462645.206657-CDS-Ecto-sp13_S_contig12131:1532..16561681462645.206657-CDS-Ecto-sp13_S_contig12131:1532..1656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12131 1533..1656 +
1681462645.2153656-CDS-Ecto-sp13_S_contig12131:2431..25091681462645.2153656-CDS-Ecto-sp13_S_contig12131:2431..2509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12131 2432..2509 +
1681462645.225211-CDS-Ecto-sp13_S_contig12131:3494..35901681462645.225211-CDS-Ecto-sp13_S_contig12131:3494..3590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12131 3495..3590 +
1681462645.235403-CDS-Ecto-sp13_S_contig12131:3921..40351681462645.235403-CDS-Ecto-sp13_S_contig12131:3921..4035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12131 3922..4035 +
1681462645.245333-CDS-Ecto-sp13_S_contig12131:4468..45161681462645.245333-CDS-Ecto-sp13_S_contig12131:4468..4516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12131 4469..4516 +
1681462645.265762-CDS-Ecto-sp13_S_contig12131:5124..51691681462645.265762-CDS-Ecto-sp13_S_contig12131:5124..5169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12131 5125..5169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12131.1811.1

>prot_Ecto-sp13_S_contig12131.1811.1 ID=prot_Ecto-sp13_S_contig12131.1811.1|Name=mRNA_Ecto-sp13_S_contig12131.1811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
QYNLPPEYTRQGTPCMDPNTFNANSVKVKGCTTLIPPIEVLLLSENSVRE
VCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQR
AEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYR
ALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITV
DYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDE
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mRNA from alignment at Ecto-sp13_S_contig12131:88..5169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12131.1811.1 ID=mRNA_Ecto-sp13_S_contig12131.1811.1|Name=mRNA_Ecto-sp13_S_contig12131.1811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5082bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12131:88..5169+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTACAACTTACCGCCCGAGTACACTCGCCAGGGCACGCCGTGCATGGA
CCCCAACACCTTCAACGCCAACTCCGTCAAGGTGATGGCTGTTCATGATG
CGGCGTGTATGGTGTACAATACCTCGTACCATGTCGATATGGGGTGCTGG
TTTGTCGAGATGATCATGAAGTGGTGCGTGGCGAGGGTGTGGGCCATGCT
TGCGTTATCACGTTTGTTTTTTTTCATATGTATTTTTTGCCCGACCTTGG
GAGAGGGGTCTGTGAAGGTGATACTGTAGTGACCGTGGCGCCTTGACGCG
GAAAAAAAATCCTCCTCTGGCGTACCCTCTATCCTTGATCAGAGAAGCCT
TTTCCCTTTTCCTCCGGAGGACACAAGTCCTGCGCCAGCGAATAGCCCAA
CCGTTCGACCGAATAGACCAACACGACCGCCTGCGGTGTACACAAGAACC
GTACGAACGGGTATCCTCTCTGTGATTGTTGTGCATTTATTCGCTAAAAA
AAACTTAAACTTTCCTCGTTCACACCCACAGTACCCGATCGCCTTTCATC
CGCGCGCGTTTTGAAAAATTTCCCGGTGTGCGTGTATACGTGTGTGTGTC
CACCGCAGGTGAAGGGCTGCACCACCCTCATCCCCCCTATCGAGGTGCTT
CTCCTCTCGGAGAACTCGGTCCGGGAGGTGTGCGGCGCCGTATGGGTGGG
GTGCTTTACTGCCAACCCCCCCGAGGTGGCGTTCGACCTGCTGTGCAGGC
TCATGAGGTATGCGTTCGGGTGTGTTTCTTTCCTTTTTTTTTGGTGTGTG
GGGAGGGGGTTTGCTACCCATTCATGTGTCGTTGTTCGCAGCTGTGTGCA
GGCTCATCAGGTACGAGTATGCTTCGTCTTTTTTTTGTGTAGGGAGGGGG
ATCGCTACCCACGATGTACTGTTGTTCGCAGCTGTGTGCAGACTCGTAAG
GAACGAGTGTGCTTCTTTTTTTGTGTGTAGGGAGGGGGATCGCTACCCAC
GATGTACTGTTGTTCGCAGCTGTGTGCAGGCTCATAAGATACGAGTGCGC
TCCTTTCCTTGTTTTTTAGAAAACATACTTGCAATCATCGAGATACTGCC
CATCCTAGATATAACCACAGTGGAAGGGGATGGGTTGAAGTCTTGACAGT
GAACGGGAAAAAAACGTCTCGATACTGGGCTCATTTTGAGTCTGTTCAAG
CGTGCACGCTGGATTTTAGACAATGGTGATGCGAGCTGGTGCAAAGCACA
AACATCTGTATGGGTATGAACTTTACATTTGATCCCCTGCAGTTCTCTTG
ATGGGTCATCGATAGCAATGTTTTTTGCTGTTGATTGGTGGTGGTGGTCC
GCCGCCGCGAATAACATTACGACGATTTTTTTACCAGTGTTTCGTCCGCG
GATGAATGGTGCTGTTTTTCGCTTGCTGCTGCGCTGCTACTCCAGCATGA
CGGAGAGCCTTCACCTGACAGACGAGAGCGATCGCTACGCGGCGGAAGTC
TTCGACTCCCAACGCGCCGAGATCCTGTCGTTCTTCCTTGTCGGAATCTA
CGAGGACCCCGCCGATAGAGTGAGTCATGGATGGCCCGGCCCCGCCTTTG
CAGGACGTGCTCCCTGTGTGTGTGTTTTTTTATGATTGACGCCGACCGCG
ATACCCGGTTGACCAATGAAGAGACGTCAGTGTCAACGTGTTAAATCAAG
GTCCCTGGAAGGGGGCCAAAGTATGTGTGGGTTTTTTTTTTTTTAGCGTC
GACCGCGCTAACCGTCTGACCAATGAAAGACGTTATTCTCAGTGCGGTTA
AAAACACAAAACACTTCCTTGTGTATGCTTGCGTATGTGCGTGTGTGTTT
TTTTGTTACTAGCATCTCCGCGCTAACCGGCTGACCGATGAAAATACGTC
AGTGCCTACGGGAACGATCAACGTCCCTGGAACGGGGCCAGAGTTGTTGT
GTGCGTTTGTGTCATTCCATCGTCGTGGACATCGGTCGTTGCACCTTTCG
GTGTTTTCAGTTTGTGGACGCATCCGCCGGGGTCACACAGGAGGAAGGAA
GGCCACACTGAAGCATGGCTTTCTGTTTCCTACGCTGGACAAATTGACAG
CGGTCTTGCGGTGTTTTTATCTCCCAGGTTTTTGCGTCCATCAATAGCTT
TGTTTTGAACTGTTGGTGATGGAACGAGCCGGCCGGCCGCTAGCTACGTT
TGTGTTTTCCGCTCGTGGTCGTGGTTGTTTTGTTGCTCGGGCGTCTACTC
GTTTGCGTCGTCATCGCCTGCGTCTTCCCAACAAGAGCTAACGTAAACAA
GCGACCTCGAACACGTTTGGTGGCGGCGAAACATTGCTGTACAGGTGGTC
CGTCGCGAGCACTACCTTGCTTTCATGGAGTGGTTCGTGTACACACTGCC
GCAGGTGGCCCTTCCCGTCAAGGTACGACTTTCGCTAGACGAGACCCCCT
TTCCTGCGGCGGTTGTGCCGCCCGTAGTGTTGTGGTTGGATCTTTTAGCC
TGTTGCTCTTGCTGCTGCTGCTGTTTTGGTGCCTCAAGTATTGCCTTGTG
CGCAATATCGGCCCCAACCTTCAAAGTGCACAGCTGTAATAGCAGTTCGG
TGTGTGCACGGCTCAATGGTTCAGGGAGCGTGCCGCGGTTCACGGGCCGT
GTCATGAATCGAGGGTTGGGTGGTTTCATGTATTTTCTTGGGGTGGTCCA
TGGCCTGTGGCCGATTTGAACGTGTACATGCCGTCTCTCTTCTTCGCGTT
TCAATATGCAACAACAGAGTGTGTAGGTAACGCGATTAGTAGGCTGCTGG
CACTGCGAGCGACATGCCGACAATCAAGATGATGCTCAAGGGAACCCAAA
CCGTCCTTTATCTAACCTGTTCGTCGTTGTGTCCCGAAATCAAATTTCGG
AACGCGCATACGGGTCCGTCGATATTCGCAGACACTCCACGGATCGTCGT
GTCTTCCTCAATGTATCGTATATGACGGTGTATATCAGACCCCCTCGGGG
CGTAGTTTCAGAGCCCAAATTGCTGCCGGCGAGAGAAAAGGCGCCAGTAC
CGAGTAAGAGCGGCATAGGAACAATTAAAACTTGACCGAGAGTATCCTTC
GTTCGGTATTTGCATCCTCCTCGTGGTATCTGGAGCCATCGAATTTTTTG
TTATGTCGGCCCCGAGGGGGGTCTGATATCCACCGTTCCGTCCCGTCCTG
TCAAACTCGGCGGTGTGGTTGTTACCGTCGCCGGAAACGAGGGTGGCTTG
TGTCTCCCTCCCACGTGCGAGCCTTTGTCCACGTGCACCCCGTTTTGTTT
ATTTTGGTCTTCTTGGTCGTCCTTGAACGAGACAGGGTGTTGTGTGTTTC
TCGCATTTTTGGTTCCTTCTTGTGTGTGACCGCGCGCGTCGTGCTTGTGT
GTGGCAGATCTGGCGCATGTACCGAGCCCTGCGCGACGACAACATCCCGT
TCGTGTCGTTTCCGCTCTCCCAAGACAAGAGCGCGTTCTACTCACACCGA
CAGGTACGCCGAAACGCACACGGCGGCGGCATTAGCAAGTGGTCCTTCAC
ACTTCACACGCGCAACTCACGCCTTCTGAAAGGAAGCTGGATGTGGCCAG
CCAGCTATAAATAAATAGCTGTACGCGACGCGCACGGCTTTCGTGAAGGC
GTGTTTTTCTTCGGGAGGGGACATCATGCACCCCTCTCCCCCCCCTGATC
CATTTGGGATGTGCTGTGTGCCTCGTACTGCGTTCCCAAGATGCGGCTGT
GTCCATGTCGGTCAATGCTTATCCCTGCACGCACCCCACTCCGTGCGCTG
CTACTGTTCGCCTCGCTCTTACCTCCTTGTGCAGGCCATGTCTGGACCGG
CCATCCCCGGGCGGTTCAGCTTCCGGTTCTCTCGGCAGCCGTCGTGCATT
ACGGTGGACTACACTGTTCAAGCCAGGGCGGTGGAGGGGAGGCCTCAGGT
ATGTAACGCACTTGAAAAGTGGAGAGGAACCTATTTGGCTGTGTGGTAAG
CGTGGATGGGTTGTTGCGGCCCTCCTGGTTGTCGTTGTTGTTGTTGCTGT
TGTTGCCTCTGTTACTGCTGGTGTGGGGAGGGAGAACAGTTTCATGGACG
ATGGGGGGAGCGAGACCACGGTGTTTTGTGTGGGTGCCCTGCTGGTTCGT
TTCAGCGAAAATTAATTTCCATGTTTTGCTCTCGTATTTTTGGGGCACAA
ATTCCGTTGGTAGCAGCTGCTGTGGTCTGTATCTGTGGGCACTGCCTTGG
CCCTCTCGCGTGTGCCATCTCTCTATCCCACCGCTCTGTTTGTGTTTTTC
CCCCCGGGTGACGTCTCGTGCGTAACTCCAAAACATTTCCCCCCGGGTGA
CGTCTCGTGCGTAACTCCAAAACACACGCAGGCGACGGTGATGAGCTACC
GCATCAAGATCAGCGCCATCGACGTCAGGGTAAGCGGAAGTCATCCATCC
TCCCTGTTGTCACGCACCGCACAGCAGCCAAGCTGGTACCAACATCGTGG
TCGTGATACACAAGTCTGCGTGCGGTTTTGTCTTTTGTGGAGGAGGCCTG
GGAGCGGCCAAGCCGAGCCCACGATCTTGGTTTCCCGCGCGGGGGGGGGG
CGGGGGGGTCAACTTGCCGGGGGTCTTTGCACAGAACTTTCGTTTTTTCT
GCACTGGCACAGAAACGGCTGGATTTTGTGCCTTGGTGGCTACCGCGTGT
TCTATAGGAAGGCCAGGGCAATATCCCAGGGCGAGCAATGCGACGAAGGT
ACCCTTGTGTTGCTCATCCGATGACCGGTCTTCTGATGATGACAACCCGG
GCATGAGGAAGCAGCAAAGGACGCTCCTAGAATTGCCAGCTGATTACATA
CCCATGTAAAGCTCAATTTCACCCTCTCCCTTTCGTTCCCCTGCCCCTGT
CGTTGGCGGCGCCAAACGTAACGGGCGCGACATCCCCGCACGCGTGCCCC
CTTTTCTTTTCCTTGCAAAAAAGACAACTTGATGTCCATTTGGTAGTTGA
TTATCTGACCGCATGTCTCCCTCTTTCTTCTTTGCAGGGGGTGATGCTGC
GCATCGAGAATCTGCTCCTCCGCGGGGACGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12131:88..5169+

>mRNA_Ecto-sp13_S_contig12131.1811.1 ID=mRNA_Ecto-sp13_S_contig12131.1811.1|Name=mRNA_Ecto-sp13_S_contig12131.1811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12131:88..5169+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTACAACTTACCGCCCGAGTACACTCGCCAGGGCACGCCGTGCATGGA
CCCCAACACCTTCAACGCCAACTCCGTCAAGGTGAAGGGCTGCACCACCC
TCATCCCCCCTATCGAGGTGCTTCTCCTCTCGGAGAACTCGGTCCGGGAG
GTGTGCGGCGCCGTATGGGTGGGGTGCTTTACTGCCAACCCCCCCGAGGT
GGCGTTCGACCTGCTGTGCAGGCTCATGAGCATGACGGAGAGCCTTCACC
TGACAGACGAGAGCGATCGCTACGCGGCGGAAGTCTTCGACTCCCAACGC
GCCGAGATCCTGTCGTTCTTCCTTGTCGGAATCTACGAGGACCCCGCCGA
TAGAGTGGTCCGTCGCGAGCACTACCTTGCTTTCATGGAGTGGTTCGTGT
ACACACTGCCGCAGGTGGCCCTTCCCGTCAAGATCTGGCGCATGTACCGA
GCCCTGCGCGACGACAACATCCCGTTCGTGTCGTTTCCGCTCTCCCAAGA
CAAGAGCGCGTTCTACTCACACCGACAGGCCATGTCTGGACCGGCCATCC
CCGGGCGGTTCAGCTTCCGGTTCTCTCGGCAGCCGTCGTGCATTACGGTG
GACTACACTGTTCAAGCCAGGGCGGTGGAGGGGAGGCCTCAGGCGACGGT
GATGAGCTACCGCATCAAGATCAGCGCCATCGACGTCAGGGGGGTGATGC
TGCGCATCGAGAATCTGCTCCTCCGCGGGGACGAA
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