mRNA_Ecto-sp13_S_contig1213.1807.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1213.1807.1
Unique NamemRNA_Ecto-sp13_S_contig1213.1807.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1213.1807.1 vs. uniprot
Match: D7FX84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX84_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 2.780e-133
Identity = 375/542 (69.19%), Postives = 380/542 (70.11%), Query Frame = 1 
Query:    1 MSSGGGRGPRPPTSGRSTEPGEPSKDQEDNPFVRQLELMLQKSASNRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLMANSKPEEKKAGTSNGGIGLPRAPSRSLFSLPESSSDEDEEAFQRRYFGLPXXXXXXXXXXXXXXXXXXXAPAEAKVARPRSDGGWPETKRCSPPNLKASLISNGRGAACRKTEGGSGDSRGNYSANVSKENGKGQ-QSARDGGAASSGRAGLGITGDRWYVGAGITRSQPTAQRRTGDGVGSARAAAAGSYNEWMSDAEDSGGAAPNAADSPTRRAGGLKRGRTPPTYDRPYSPSSDDNGXXXXXXXXRKTGRLEGRYPAPMPARRERSNSLSLSPPRLLACDHDYVTSDEEESSKPGTGGRRKGSRGGEGGGRKEPQLLSNPATA-GSTAVGRGRKRGHEDLLNEKIEAMRVGSDEEGPHAGXXXXXXXXXXXXXXXXXXXXXXXXXXE--VDYEDLKPHIEDPPWLGKLVPFDLEEGGFINPSINRYLRDYQREGVR 1614
            MSSGGGRGPRPPT GR TEPGEPS+DQEDNPFVRQLELMLQKSASNRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  L+AN KP               RA SRSLFSLP                   XXXXXXXXXXXXXXXXXXXA AEAKVARP SDGGWPETKRCSPPNLKASLISNGRGAACRKTEGGSGDSRG+ SAN SK NGK + QSARDG AASSGRAGLGITGDRWY GAGITR QPTAQRRTGDG+GSA AAAAGS NEWMSDAED  GA PNA DSPTRRAGGL                                                                      DEE                     RKE QLLSNPATA GSTAVGRGRKRGHED LNEKIEAMRVGSDEEGPHAG XXXXXXXXXXXXXX       XXXX   VDYEDLKPHIEDPPWLGKLVPFDL EGGFINPSINRYLRDYQREGVR
Sbjct:    1 MSSGGGRGPRPPTFGRRTEPGEPSEDQEDNPFVRQLELMLQKSASNRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVANCKPXXXXXXXXXXXXXX-RASSRSLFSLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAEAKVARPGSDGGWPETKRCSPPNLKASLISNGRGAACRKTEGGSGDSRGDDSANGSKGNGKXKGQSARDGDAASSGRAGLGITGDRWYGGAGITRPQPTAQRRTGDGIGSAGAAAAGSDNEWMSDAEDPRGATPNAIDSPTRRAGGLN---------------------------------------------------------------------DEEXXXXXXXXXXXXXXXXXXXXXRKELQLLSNPATAAGSTAVGRGRKRGHEDFLNEKIEAMRVGSDEEGPHAGGXXXXXXXXXXXXXXAVTMGPDXXXXXXXVDYEDLKPHIEDPPWLGKLVPFDLGEGGFINPSINRYLRDYQREGVR 472
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1213.1807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FX84_ECTSI2.780e-13369.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1213contigEcto-sp13_S_contig1213:284..1897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score438.7
Seed ortholog evalue3.8e-120
Seed eggNOG ortholog2880.D7FX84
Model size1614
KEGG koko:K11130,ko:K20098
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.histone H2A-H2B dimer displacement
EggNOG OGsCOG0553@1,KOG0387@2759
Ec32 ortholog descriptionSNF2-related helicase protein
Ec32 orthologEc-26_003910.1
Cds size1614
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462644.8603828-CDS-Ecto-sp13_S_contig1213:283..18971681462644.8603828-CDS-Ecto-sp13_S_contig1213:283..1897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1213 284..1897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1213.1807.1prot_Ecto-sp13_S_contig1213.1807.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1213 284..1897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1213.1807.1

>prot_Ecto-sp13_S_contig1213.1807.1 ID=prot_Ecto-sp13_S_contig1213.1807.1|Name=mRNA_Ecto-sp13_S_contig1213.1807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=538bp
MSSGGGRGPRPPTSGRSTEPGEPSKDQEDNPFVRQLELMLQKSASNRAAA
VSPPPPRARGAANAASTSAWRPRTSLSSGGGGAASGRVVAAGGASQYGGQ
SLMANSKPEEKKAGTSNGGIGLPRAPSRSLFSLPESSSDEDEEAFQRRYF
GLPPLRKPSAAAAAASVPPPAAAPAEAKVARPRSDGGWPETKRCSPPNLK
ASLISNGRGAACRKTEGGSGDSRGNYSANVSKENGKGQQSARDGGAASSG
RAGLGITGDRWYVGAGITRSQPTAQRRTGDGVGSARAAAAGSYNEWMSDA
EDSGGAAPNAADSPTRRAGGLKRGRTPPTYDRPYSPSSDDNGDGGGGGRG
RKTGRLEGRYPAPMPARRERSNSLSLSPPRLLACDHDYVTSDEEESSKPG
TGGRRKGSRGGEGGGRKEPQLLSNPATAGSTAVGRGRKRGHEDLLNEKIE
AMRVGSDEEGPHAGGGGRGGGRGRRRGGAVTMGPDEEEEEEVDYEDLKPH
IEDPPWLGKLVPFDLEEGGFINPSINRYLRDYQREGVR
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mRNA from alignment at Ecto-sp13_S_contig1213:284..1897-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1213.1807.1 ID=mRNA_Ecto-sp13_S_contig1213.1807.1|Name=mRNA_Ecto-sp13_S_contig1213.1807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1614bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1213:284..1897- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAGCGGGGGTGGACGAGGTCCACGGCCCCCGACCTCCGGGAGAAG
CACGGAGCCAGGCGAACCCTCCAAGGACCAAGAGGACAATCCGTTCGTGC
GGCAGCTGGAGCTCATGTTGCAAAAATCGGCCAGCAACCGCGCGGCAGCA
GTGTCGCCGCCCCCGCCGCGGGCTCGGGGGGCAGCAAACGCTGCGTCGAC
GTCGGCGTGGCGGCCGCGGACTTCTCTTTCCAGCGGCGGTGGTGGGGCAG
CGAGCGGGCGGGTGGTGGCAGCAGGAGGGGCCTCCCAGTACGGGGGGCAG
TCTCTGATGGCGAACAGTAAGCCGGAGGAGAAGAAGGCGGGCACCAGCAA
CGGTGGTATCGGCCTTCCGCGCGCTCCGTCGCGATCGCTCTTCTCGTTGC
CCGAATCCTCCTCCGACGAAGACGAGGAGGCGTTTCAGCGGAGATATTTC
GGCTTGCCGCCGTTGAGGAAACCCTCGGCAGCGGCGGCGGCGGCTTCCGT
GCCGCCGCCGGCAGCCGCCCCGGCGGAAGCGAAAGTCGCGCGGCCGCGCT
CCGACGGCGGCTGGCCCGAGACAAAGCGCTGCTCGCCGCCGAATCTGAAG
GCGTCATTGATTTCCAACGGCAGAGGTGCTGCGTGCCGCAAGACAGAGGG
CGGTAGCGGCGACAGCCGCGGGAATTACAGCGCCAACGTGAGCAAAGAAA
ACGGCAAGGGACAGCAGTCCGCGCGGGACGGAGGTGCCGCGTCCAGCGGC
AGGGCGGGGCTGGGAATCACCGGCGATAGGTGGTACGTCGGGGCCGGGAT
CACAAGGTCGCAACCAACCGCGCAGAGGAGAACCGGCGACGGAGTCGGTT
CGGCCAGAGCAGCGGCGGCGGGCTCCTACAACGAGTGGATGTCGGACGCG
GAAGATTCCGGGGGCGCGGCGCCCAACGCTGCTGATTCCCCAACGAGGAG
GGCGGGCGGGCTCAAGCGTGGGCGTACCCCTCCGACCTATGACCGACCGT
ATTCGCCCAGCAGCGACGACAACGGTGACGGCGGCGGCGGTGGGCGTGGC
AGGAAGACCGGGCGGCTAGAAGGGCGCTACCCGGCTCCGATGCCGGCCCG
GAGAGAGCGATCTAACTCCCTGTCCCTCTCCCCGCCCCGCCTGCTGGCCT
GCGACCACGACTACGTCACCAGCGACGAAGAGGAAAGTTCTAAGCCCGGC
ACGGGGGGCCGGCGAAAGGGAAGCAGGGGGGGTGAGGGCGGGGGACGGAA
GGAGCCGCAGCTGCTGTCGAACCCTGCCACCGCCGGCTCGACGGCGGTCG
GACGTGGCCGAAAGCGGGGGCACGAGGACTTGCTCAACGAGAAGATCGAA
GCCATGCGGGTCGGTTCGGACGAGGAAGGACCGCACGCCGGCGGCGGTGG
CCGCGGCGGGGGGCGTGGAAGGAGGAGAGGCGGAGCGGTCACGATGGGCC
CCGATGAGGAGGAGGAGGAGGAGGTTGACTACGAGGACCTCAAGCCGCAC
ATCGAGGACCCCCCCTGGCTAGGAAAACTGGTCCCGTTCGACCTCGAGGA
AGGCGGCTTCATTAACCCTTCCATCAACCGGTACCTGCGGGACTACCAGC
GAGAAGGGGTGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1213:284..1897-

>mRNA_Ecto-sp13_S_contig1213.1807.1 ID=mRNA_Ecto-sp13_S_contig1213.1807.1|Name=mRNA_Ecto-sp13_S_contig1213.1807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1614bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1213:284..1897- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAGCGGGGGTGGACGAGGTCCACGGCCCCCGACCTCCGGGAGAAG
CACGGAGCCAGGCGAACCCTCCAAGGACCAAGAGGACAATCCGTTCGTGC
GGCAGCTGGAGCTCATGTTGCAAAAATCGGCCAGCAACCGCGCGGCAGCA
GTGTCGCCGCCCCCGCCGCGGGCTCGGGGGGCAGCAAACGCTGCGTCGAC
GTCGGCGTGGCGGCCGCGGACTTCTCTTTCCAGCGGCGGTGGTGGGGCAG
CGAGCGGGCGGGTGGTGGCAGCAGGAGGGGCCTCCCAGTACGGGGGGCAG
TCTCTGATGGCGAACAGTAAGCCGGAGGAGAAGAAGGCGGGCACCAGCAA
CGGTGGTATCGGCCTTCCGCGCGCTCCGTCGCGATCGCTCTTCTCGTTGC
CCGAATCCTCCTCCGACGAAGACGAGGAGGCGTTTCAGCGGAGATATTTC
GGCTTGCCGCCGTTGAGGAAACCCTCGGCAGCGGCGGCGGCGGCTTCCGT
GCCGCCGCCGGCAGCCGCCCCGGCGGAAGCGAAAGTCGCGCGGCCGCGCT
CCGACGGCGGCTGGCCCGAGACAAAGCGCTGCTCGCCGCCGAATCTGAAG
GCGTCATTGATTTCCAACGGCAGAGGTGCTGCGTGCCGCAAGACAGAGGG
CGGTAGCGGCGACAGCCGCGGGAATTACAGCGCCAACGTGAGCAAAGAAA
ACGGCAAGGGACAGCAGTCCGCGCGGGACGGAGGTGCCGCGTCCAGCGGC
AGGGCGGGGCTGGGAATCACCGGCGATAGGTGGTACGTCGGGGCCGGGAT
CACAAGGTCGCAACCAACCGCGCAGAGGAGAACCGGCGACGGAGTCGGTT
CGGCCAGAGCAGCGGCGGCGGGCTCCTACAACGAGTGGATGTCGGACGCG
GAAGATTCCGGGGGCGCGGCGCCCAACGCTGCTGATTCCCCAACGAGGAG
GGCGGGCGGGCTCAAGCGTGGGCGTACCCCTCCGACCTATGACCGACCGT
ATTCGCCCAGCAGCGACGACAACGGTGACGGCGGCGGCGGTGGGCGTGGC
AGGAAGACCGGGCGGCTAGAAGGGCGCTACCCGGCTCCGATGCCGGCCCG
GAGAGAGCGATCTAACTCCCTGTCCCTCTCCCCGCCCCGCCTGCTGGCCT
GCGACCACGACTACGTCACCAGCGACGAAGAGGAAAGTTCTAAGCCCGGC
ACGGGGGGCCGGCGAAAGGGAAGCAGGGGGGGTGAGGGCGGGGGACGGAA
GGAGCCGCAGCTGCTGTCGAACCCTGCCACCGCCGGCTCGACGGCGGTCG
GACGTGGCCGAAAGCGGGGGCACGAGGACTTGCTCAACGAGAAGATCGAA
GCCATGCGGGTCGGTTCGGACGAGGAAGGACCGCACGCCGGCGGCGGTGG
CCGCGGCGGGGGGCGTGGAAGGAGGAGAGGCGGAGCGGTCACGATGGGCC
CCGATGAGGAGGAGGAGGAGGAGGTTGACTACGAGGACCTCAAGCCGCAC
ATCGAGGACCCCCCCTGGCTAGGAAAACTGGTCCCGTTCGACCTCGAGGA
AGGCGGCTTCATTAACCCTTCCATCAACCGGTACCTGCGGGACTACCAGC
GAGAAGGGGTGCGT
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