mRNA_Ecto-sp13_S_contig12124.1804.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12124.1804.1
Unique NamemRNA_Ecto-sp13_S_contig12124.1804.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12124.1804.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.050e-20
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:  226 AAGVSLTPAVSRGLRRGYLAQTLARIVGVAGFVREARKAGYGGDRAAPGVSRSASSPT 399
            A GVSLTPAVSR LRRGYLAQTLARIVGVAGFVREAR+AGYGGDR APGVS SASS T
Sbjct: 1741 AVGVSLTPAVSRDLRRGYLAQTLARIVGVAGFVREARRAGYGGDRTAPGVSGSASSAT 1798
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BLAST of mRNA_Ecto-sp13_S_contig12124.1804.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.090e-17
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:  229 AGVSLTPAVSRGLRRGYLAQTLARIVGVAGFVREARKAGYGGDRAAPGVS 378
            AGVSLTPAVSRGLRRGYLAQTLARIVGVAGFVREAR+AGYGGD  APG S
Sbjct: 1290 AGVSLTPAVSRGLRRGYLAQTLARIVGVAGFVREARRAGYGGDGTAPGGS 1339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12124.1804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE3.050e-2089.66CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI5.090e-1792.00CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12124contigEcto-sp13_S_contig12124:1164..1643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score88.6
Seed ortholog evalue2.9e-15
Seed eggNOG ortholog2880.D7G6J0
Model size482
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
Cds size480
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462644.7298908-CDS-Ecto-sp13_S_contig12124:1163..16431681462644.7298908-CDS-Ecto-sp13_S_contig12124:1163..1643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12124 1164..1643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12124.1804.1prot_Ecto-sp13_S_contig12124.1804.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12124 1164..1643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12124.1804.1

>prot_Ecto-sp13_S_contig12124.1804.1 ID=prot_Ecto-sp13_S_contig12124.1804.1|Name=mRNA_Ecto-sp13_S_contig12124.1804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
PASPPPAPSGSGSRKRSSSPSAAAAAAAGSKAHPAAGGKEQHHRKTEVGA
NGRTEESGGGGGGGVANSDGAPAAAAAGVSLTPAVSRGLRRGYLAQTLAR
IVGVAGFVREARKAGYGGDRAAPGVSRSASSPTTTSPPTERSFPQQQSGG
VVGAGGGGQQ
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mRNA from alignment at Ecto-sp13_S_contig12124:1164..1643+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12124.1804.1 ID=mRNA_Ecto-sp13_S_contig12124.1804.1|Name=mRNA_Ecto-sp13_S_contig12124.1804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12124:1164..1643+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCTCTCCGCCGCCGGCACCATCCGGATCGGGATCCAGGAAGCGTTC
TTCTTCTCCTTCCGCCGCCGCCGCCGCCGCCGCCGGGAGCAAGGCGCACC
CCGCCGCTGGCGGCAAAGAGCAACATCACCGGAAGACTGAAGTCGGTGCC
AACGGCCGGACGGAGGAGAGCGGCGGCGGCGGCGGCGGCGGGGTCGCCAA
TAGCGACGGCGCACCGGCGGCGGCGGCGGCGGGCGTATCGCTGACGCCGG
CCGTTTCTCGAGGCCTGCGCCGGGGGTACCTCGCACAGACCCTCGCCAGA
ATCGTTGGCGTAGCCGGATTCGTTCGAGAAGCGAGAAAAGCGGGGTACGG
CGGGGACAGGGCTGCCCCCGGCGTTAGCCGTAGCGCTAGTAGCCCTACCA
CTACTAGCCCGCCCACGGAGAGAAGTTTTCCGCAGCAGCAATCCGGCGGC
GTTGTTGGGGCCGGGGGCGGTGGTCAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12124:1164..1643+

>mRNA_Ecto-sp13_S_contig12124.1804.1 ID=mRNA_Ecto-sp13_S_contig12124.1804.1|Name=mRNA_Ecto-sp13_S_contig12124.1804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12124:1164..1643+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCTCTCCGCCGCCGGCACCATCCGGATCGGGATCCAGGAAGCGTTC
TTCTTCTCCTTCCGCCGCCGCCGCCGCCGCCGCCGGGAGCAAGGCGCACC
CCGCCGCTGGCGGCAAAGAGCAACATCACCGGAAGACTGAAGTCGGTGCC
AACGGCCGGACGGAGGAGAGCGGCGGCGGCGGCGGCGGCGGGGTCGCCAA
TAGCGACGGCGCACCGGCGGCGGCGGCGGCGGGCGTATCGCTGACGCCGG
CCGTTTCTCGAGGCCTGCGCCGGGGGTACCTCGCACAGACCCTCGCCAGA
ATCGTTGGCGTAGCCGGATTCGTTCGAGAAGCGAGAAAAGCGGGGTACGG
CGGGGACAGGGCTGCCCCCGGCGTTAGCCGTAGCGCTAGTAGCCCTACCA
CTACTAGCCCGCCCACGGAGAGAAGTTTTCCGCAGCAGCAATCCGGCGGC
GTTGTTGGGGCCGGGGGCGGTGGTCAGCAG
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