mRNA_Ecto-sp13_S_contig12123.1803.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12123.1803.1
Unique NamemRNA_Ecto-sp13_S_contig12123.1803.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Match: D8LGE2_ECTSI (Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE2_ECTSI)

HSP 1 Score: 562 bits (1449), Expect = 4.920e-200
Identity = 271/291 (93.13%), Postives = 280/291 (96.22%), Query Frame = 1
Query:    1 RYGMFNHVVYDVFIKGEDDVKSEETGLRGMSRFGENLTVFSEKGLKFNYVNKKGEKKQEYDFTDDYTIVANLVCSPDSFFSAEDNWFGFIGLSKDKKELVIVFRGTETTKEWIENATVFMEQLDGEPPESGLALFLNRNTLMVHRGFQQLYREKADHFPSPKDKIYEVIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSITAGGYKHMGTEITLDNTHLHEAGVVKSDGG 873
            +YGMFNHVVYDVFIKGEDD KSEETGLRG SRFG++ T FSEKGLKFNYVNKKGEKKQEYDFTDDYTIVANLVCSPDSFFSAEDNWFGFIGLSKDKKE+VIVFRGTETTKEWIENAT+FMEQLDGEPPESGLAL LNR+TLMVH GFQQLYREKAD FPSPKDKIYEVIEA KNDD+VSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGL+WA PKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSIT GGYKHMGTEITLDNTHLH+AGVVKSD G
Sbjct:   77 KYGMFNHVVYDVFIKGEDDFKSEETGLRGRSRFGDDFTAFSEKGLKFNYVNKKGEKKQEYDFTDDYTIVANLVCSPDSFFSAEDNWFGFIGLSKDKKEMVIVFRGTETTKEWIENATLFMEQLDGEPPESGLALLLNRDTLMVHSGFQQLYREKADQFPSPKDKIYEVIEAFKNDDKVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLAWAAPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSITTGGYKHMGTEITLDNTHLHKAGVVKSDDG 367          
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Match: A0A6H5KDS9_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS9_9PHAE)

HSP 1 Score: 562 bits (1448), Expect = 1.200e-199
Identity = 270/291 (92.78%), Postives = 282/291 (96.91%), Query Frame = 1
Query:    1 RYGMFNHVVYDVFIKGEDDVKSEETGLRGMSRFGENLTVFSEKGLKFNYVNKKGEKKQEYDFTDDYTIVANLVCSPDSFFSAEDNWFGFIGLSKDKKELVIVFRGTETTKEWIENATVFMEQLDGEPPESGLALFLNRNTLMVHRGFQQLYREKADHFPSPKDKIYEVIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSITAGGYKHMGTEITLDNTHLHEAGVVKSDGG 873
            +YGM NHVVYDVFIKGED+VKSEETGLRG SRFG+ LT FSEKGL+FNYVNKKGE+KQEYDFTDDYTIVANLVCSP+SFFSAEDNWFGFIGLSKD+KELVIVFRGTETTKEWIENAT+FMEQLDGEPPESGLAL LNRNTLMVH GFQQLYREKADHFPSPKDKIYEVIEA KND++VSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGL WAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWS+TAGGYKHMGTEITLDNTHLH+AGVVKSD G
Sbjct:   92 KYGMLNHVVYDVFIKGEDEVKSEETGLRGRSRFGDKLTAFSEKGLRFNYVNKKGEQKQEYDFTDDYTIVANLVCSPESFFSAEDNWFGFIGLSKDEKELVIVFRGTETTKEWIENATLFMEQLDGEPPESGLALLLNRNTLMVHSGFQQLYREKADHFPSPKDKIYEVIEAFKNDNKVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLGWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSMTAGGYKHMGTEITLDNTHLHKAGVVKSDDG 382          
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Match: D7FQN1_ECTSI (Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN1_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 2.650e-102
Identity = 163/294 (55.44%), Postives = 204/294 (69.39%), Query Frame = 1
Query:    1 RYGMFNHVVYDVFIKGEDDVKSEETGLRGMSRFGENLTVFSEKGLKFNYVNKKGEKKQEYDFTDDYTIVANLVCSPDSFFSAEDNWFGFIGLSKDK---KELVIVFRGTETTKEWIENATVFMEQLDGEPPESGLALFLNRNTLMVHRGFQQLYREKADHFPSPKDKIYEVIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSITAGGYKHMGTEITLDNTHLHEAGVVKSDGG 873
            +YGM NH+VYDVF KG+  VK + TGLR  SRFGENL  F+  GL+F+YVN  GE+KQEYDF+++Y + ANLVCSP +F   EDNWFGFI +SK     KE+V+VFRGTET KEW  NA V M  L+G    S L L   R  LM H GFQQLY  K  HF SP+  I+E I+  K  ++  ++KVTVVGHSLGAAM Q CA+DLA+S V GD+PIL L+W  PK GN  LA WV +QPNLRILR+ V +D V  +PPDW+  + +GGYK  GTE+ L N  + + G+++ D G
Sbjct:   50 KYGMVNHMVYDVFQKGKHGVK-DATGLRARSRFGENLEDFNALGLEFSYVNMAGEQKQEYDFSNEYEVQANLVCSPSAFAVKEDNWFGFIAISKADHGGKEMVVVFRGTETVKEWARNAKVKMVPLEGAKQLSTLELGWARWNLMCHEGFQQLYIGKPKHFESPRTVIHEQIK--KWVEKGRVDKVTVVGHSLGAAMCQLCAIDLAYSNVGGDIPILALAWGAPKVGNKTLATWVTEQPNLRILRISVAVDTVIRLPPDWVGFLLSGGYKATGTELILSNMQMQKQGLLRLDVG 340          
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Match: D8SCT0_SELML (Phospholipase A1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SCT0_SELML)

HSP 1 Score: 97.4 bits (241), Expect = 2.740e-19
Identity = 87/316 (27.53%), Postives = 143/316 (45.25%), Query Frame = 1
Query:    1 RYGMFNHVVYDVFIKGEDDVKSEETGLRGMSRFGENLTVFSEKGLKFNYVNKKGEKKQEYDFTDDYTIVANLVCSPDSFFSAEDNWFGFIGLSKD-------KKELVIVFRGTETTKEWIENA-TVFMEQLDGEPPESGLAL----------FLNRNT--------LMVHRGFQQLYREKADHFP------SPKDKIYEVIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGD------VPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSITAGGYKHMGTEITLDNT 834
            RY  F  VVYD   K      +  +   G+ R+ ++  +F +  +K NY      +   Y  TD  T++  +V +   F     +WFG++ +S D       ++++++VFRGT+   EW  N    F  Q+    P+SGL            FL+  T        +++   +   Y  K    P      S +++I   + +L N+ +     +TV GHSLGA++A  CA D+A+ ++  +      +P+    +A P  GN        K   LRILRV    D V  VPP  +W     GY+H+G E+T+D +
Sbjct:   33 RYAQFIQVVYDSLNK------NPVSKANGLPRYAKS-ELFDKLHVKANYT----IRNFFYCTTDLETLLGKVVETVLDFTDPNTSWFGYVAVSDDEETRRLGRRDIIVVFRGTQQDIEWASNILNSFHGQIGKPEPKSGLPPLQTPTSTPTGFLSGLTNIQLPWEKVLIANRWLAPYTGKNPQEPLGFGKKSAREQISAAVTSLLNEYKAEEMSITVTGHSLGASLATVCAYDIANEKLNVNPSTKKVIPVTCFPFASPYVGNEEFKTAAEKIEGLRILRVTNIWDLVPKVPP-LLW-----GYRHVGIELTIDTS 331          
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Match: A0A8J5VU22_ZIZPA (Lipase_3 domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VU22_ZIZPA)

HSP 1 Score: 96.3 bits (238), Expect = 1.250e-18
Identity = 66/212 (31.13%), Postives = 104/212 (49.06%), Query Frame = 1
Query:  223 SPDSFFSAEDNWFGFIGLSKDKKE--------LVIVFRGTETTKEWIENATVFMEQLDGEPPESGLALFLNRNTLMVHRGFQQLYREKADHFPSPKDKIYEVIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDW-MWSITAGGYKHMGTEITLDN 831
            S   + + + NW G++ +   ++E        + IV RGT T  EW EN    +  L+GE  E G A         V RGF  LY+   +   S  + + + +  L +  +     +TVVGHSLG A+A   A ++A + V    P+  +S+ GPK GNAA    + K   + +LR+    D VT VP      S+T   Y+H+G E+++D+
Sbjct:  247 STPEWLTQQSNWIGYVAVCDSEREVARMGRRDIAIVLRGTATCLEWAENLRASLVPLNGESGEDGGA-----QQPKVARGFLSLYKTAGEKVKSLSEDVIDEVRRLMDKYKGEQLSITVVGHSLGGALALLVADEIA-TTVPDAPPVAVVSFGGPKVGNAAFVEKLQKSKKVNVLRIVNAGDMVTKVPGVMPRLSLTKEQYQHVGAELSIDS 452          
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Match: A2X7W8_ORYSI (Lipase_3 domain-containing protein n=12 Tax=Oryzeae TaxID=147380 RepID=A2X7W8_ORYSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.230e-18
Identity = 65/210 (30.95%), Postives = 103/210 (49.05%), Query Frame = 1
Query:  235 FFSAEDNWFGFIGLSKDKKE--------LVIVFRGTETTKEWIENATVFMEQLDGEPPESGLALFLNRNTLMVHRGFQQLYREKADHFPSPKDKIYEVIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVP---PDWMWSITAGGYKHMGTEITLDN 831
            + + + NW G++ + + ++E        + IV RGT T  EW EN    +  LDGE  E G      +    V RGF+ LY+   +   S  +++   +  L    +     +TVVGHSLG A+A   A ++A + V    P+  +S+ GPK GNAA    + K   + +LR+    D VT VP   P     +T   Y+H+G E+ +D+
Sbjct:  252 WLTQQSNWIGYVAVCESEREVARMGRRDIAIVLRGTATCLEWAENLRASLVPLDGESGEGG-----GQEEPKVARGFRSLYKTAGEKVKSLSEEVMGEVRRLMEKYKGEELSITVVGHSLGGALALLVADEIA-TTVPDAPPVAVVSFGGPKVGNAAFVDKLQKSGRVNVLRIVNAGDMVTKVPGVAP--RLPLTKEQYQHVGAELRIDS 453          
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Match: A0A0D9VJ11_9ORYZ (Lipase_3 domain-containing protein n=2 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VJ11_9ORYZ)

HSP 1 Score: 92.8 bits (229), Expect = 2.440e-17
Identity = 65/210 (30.95%), Postives = 102/210 (48.57%), Query Frame = 1
Query:  235 FFSAEDNWFGFIGLSKDKKE--------LVIVFRGTETTKEWIENATVFMEQLDGEPPESGLALFLNRNTLMVHRGFQQLYREKADHFPSPKDKIYEVIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVP---PDWMWSITAGGYKHMGTEITLDN 831
            + + + NW G++ + + ++E        + IV RGT T  EW EN    +  LDGE   +G           V RGF  LY+   + F S  +++   +  L    +     +TVVGHSLG A+A   A ++A + V    P+  +S+ GPK GNAA    + K   + +LR+    D VT VP   P     +T   Y+H+G E+ +D+
Sbjct:  250 WLTQQSNWIGYVAVCESEREVSRMGRRDIAIVLRGTATCLEWAENLRASLVPLDGET-SAGAGGEAGAEEAKVARGFLSLYKTGGEKFKSLSEEVMGEVRRLMEKYKGEELSITVVGHSLGGALALLVADEIA-TTVPDAPPVAVVSFGGPKVGNAAFVDRLKKSGKVNVLRIVNAGDVVTKVPGVAP--RLPLTKEQYQHVGAELRIDS 455          
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Match: A0A0E0K330_ORYPU (Lipase_3 domain-containing protein n=3 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0K330_ORYPU)

HSP 1 Score: 92.8 bits (229), Expect = 2.450e-17
Identity = 65/210 (30.95%), Postives = 103/210 (49.05%), Query Frame = 1
Query:  235 FFSAEDNWFGFIGLSKDKKE--------LVIVFRGTETTKEWIENATVFMEQLDGEPPESGLALFLNRNTLMVHRGFQQLYREKADHFPSPKDKIYEVIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVP---PDWMWSITAGGYKHMGTEITLDN 831
            + + + NW G++ + + ++E        + IV RGT T  EW EN    +  LDGE  E G      +    V RGF+ LY+   +   S  +++   +  L    +     +TVVGHSLG A+A   A ++A + V    P+  +S+ GPK GNAA    + K   + +LR+    D VT VP   P     +T   Y+H+G E+ +D+
Sbjct:  258 WLTQQSNWIGYVAVCESEREVTRMGRRDIAIVLRGTATCLEWAENLRASLVPLDGESGEGGSGGA--QEEPKVARGFRSLYKTAGEKVKSLSEEVMGEVRRLMEKYKGEELSITVVGHSLGGALALLVADEIA-TTVPDAPPVAVVSFGGPKVGNAAFVDKLQKSGKVNVLRIVNAGDMVTKVPGVAP--RLPLTKEQYQHVGAELRIDS 462          
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Match: A0A6P5EKC8_ANACO (phospholipase A1-Ibeta2, chloroplastic n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EKC8_ANACO)

HSP 1 Score: 91.7 bits (226), Expect = 2.980e-17
Identity = 66/222 (29.73%), Postives = 104/222 (46.85%), Query Frame = 1
Query:  232 SFFSAEDNWFGFIGLSKDKKE--------LVIVFRGTETTKEWIENATVFMEQLDGEPPESGLALFLNRNTLMVHRGFQQLYREKADHFPSPKDKIYEVIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLGDVPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSITAGGYKHMGTEITLDNTHLHEAGVVKSDGG 873
            S+ +   +W G++ +    +E        +V+V RGT T  EW EN    +  +DGE P        + +   V RGF  LY+   +  PS  D +   +  L +  +     VTVVGHSLGAA+A   A +L+        P+  +S+ GP+ GN A A  + +   + +LR+    D VT VP          GY+H+GTE+ L   H  ++  ++   G
Sbjct:  130 SWLTQRTSWIGYVAVCDSDREVARMGRRDIVVVLRGTATCLEWAENLRTSLVPVDGEAPGGSAG---DPSAPKVARGFLNLYKTPGERVPSLSDAVVGEVRRLMDVYKGEELSVTVVGHSLGAALALLVADELSACAPRAP-PVAVVSFGGPRVGNRAFAERLERSRGVGVLRIVNAGDVVTRVPG---LPHARNGYEHVGTELRL---HTSDSPCLRPSAG 341          
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Match: UPI00125D8A7D (phospholipase A1-II 1-like n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D8A7D)

HSP 1 Score: 90.5 bits (223), Expect = 7.060e-17
Identity = 96/311 (30.87%), Postives = 143/311 (45.98%), Query Frame = 1
Query:    1 RYGMFNHVVYDVFIKGEDDVKSEETGLRGMSRFGE-NL---TVFSEKGLKFNYV---------NKKGEKKQEYDFTDDYTIVANLVCSPDSFFSAEDNWFGFIGLSKDK-------KELVIVFRGTETTKEWIENATVFMEQLDGEPPESGLALFLNRNTLMVHRGFQQLYREKADHFP----SPKDKIYE----VIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLAHSRVLG-DVPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNVPPDWMWSITAG------GYKHMGTEITLD 828
             YG     VYD FI    +  S+ TGL   SR+ + NL   T    K   F Y          NK G  +  Y      ++ A+ V         E NW G++ ++ DK       +++++V+RGTET  EWIE+  + M +          A+    N  +VH+G+ ++Y       P    S +D++ E    ++E  KN+ EVSI   TV GHSLGA++A   AVDLA + +   +V +    +A PK GN       ++Q NLR LRV    D V  VP     S+ AG       YK +G +  ++
Sbjct:   36 HYGSMIGAVYDSFIT---EPTSKYTGL---SRYAKKNLLQKTGLDNKANPFKYTVTNYFYTPSNKIGGAQGGYHVQ---SVRADAVLK-------ESNWGGYVAVATDKGKEVLGRRDILVVWRGTETMSEWIEDFKIVMVKP---------AIIFADNGSLVHKGWYEMYTSTNQDSPLNSKSARDQVREEVAKLLEQYKNE-EVSI---TVTGHSLGASLATLNAVDLAANPLNNTEVLVTAFLFASPKVGNEGFKNAFSQQKNLRALRVVNQDDLVPKVP---FMSVEAGTILPLIAYKDVGVQFDIN 314          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12123.1803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE2_ECTSI4.920e-20093.13Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5KDS9_9PHAE1.200e-19992.78Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
D7FQN1_ECTSI2.650e-10255.44Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
D8SCT0_SELML2.740e-1927.53Phospholipase A1 n=2 Tax=Selaginella moellendorffi... [more]
A0A8J5VU22_ZIZPA1.250e-1831.13Lipase_3 domain-containing protein n=1 Tax=Zizania... [more]
A2X7W8_ORYSI4.230e-1830.95Lipase_3 domain-containing protein n=12 Tax=Oryzea... [more]
A0A0D9VJ11_9ORYZ2.440e-1730.95Lipase_3 domain-containing protein n=2 Tax=Leersia... [more]
A0A0E0K330_ORYPU2.450e-1730.95Lipase_3 domain-containing protein n=3 Tax=Oryza p... [more]
A0A6P5EKC8_ANACO2.980e-1729.73phospholipase A1-Ibeta2, chloroplastic n=2 Tax=Ana... [more]
UPI00125D8A7D7.060e-1730.87phospholipase A1-II 1-like n=1 Tax=Ipomoea triloba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12123contigEcto-sp13_S_contig12123:496..4806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score562.4
Seed ortholog evalue1.3e-157
Seed eggNOG ortholog2880.D8LGE2
Model size894
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
Ec32 ortholog descriptionlipase
Ec32 orthologEc-16_003710.2
Cds size885
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12123.1803.1prot_Ecto-sp13_S_contig12123.1803.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12123 505..4806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462644.624469-UTR-Ecto-sp13_S_contig12123:495..5041681462644.624469-UTR-Ecto-sp13_S_contig12123:495..504Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12123 496..504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462644.6337235-CDS-Ecto-sp13_S_contig12123:504..6381681462644.6337235-CDS-Ecto-sp13_S_contig12123:504..638Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12123 505..638 +
1681462644.6470923-CDS-Ecto-sp13_S_contig12123:1177..12381681462644.6470923-CDS-Ecto-sp13_S_contig12123:1177..1238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12123 1178..1238 +
1681462644.6571176-CDS-Ecto-sp13_S_contig12123:1393..14831681462644.6571176-CDS-Ecto-sp13_S_contig12123:1393..1483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12123 1394..1483 +
1681462644.6653285-CDS-Ecto-sp13_S_contig12123:2064..21871681462644.6653285-CDS-Ecto-sp13_S_contig12123:2064..2187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12123 2065..2187 +
1681462644.6813004-CDS-Ecto-sp13_S_contig12123:2867..30271681462644.6813004-CDS-Ecto-sp13_S_contig12123:2867..3027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12123 2868..3027 +
1681462644.6926732-CDS-Ecto-sp13_S_contig12123:3923..41031681462644.6926732-CDS-Ecto-sp13_S_contig12123:3923..4103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12123 3924..4103 +
1681462644.70207-CDS-Ecto-sp13_S_contig12123:4669..48061681462644.70207-CDS-Ecto-sp13_S_contig12123:4669..4806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12123 4670..4806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12123.1803.1

>prot_Ecto-sp13_S_contig12123.1803.1 ID=prot_Ecto-sp13_S_contig12123.1803.1|Name=mRNA_Ecto-sp13_S_contig12123.1803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
MFNHVVYDVFIKGEDDVKSEETGLRGMSRFGENLTVFSEKGLKFNYVNKK
GEKKQEYDFTDDYTIVANLVCSPDSFFSAEDNWFGFIGLSKDKKELVIVF
RGTETTKEWIENATVFMEQLDGEPPESGLALFLNRNTLMVHRGFQQLYRE
KADHFPSPKDKIYEVIEALKNDDEVSIEKVTVVGHSLGAAMAQHCAVDLA
HSRVLGDVPILGLSWAGPKGGNAALAAWVAKQPNLRILRVRVPIDFVTNV
PPDWMWSITAGGYKHMGTEITLDNTHLHEAGVVKSDGGLPESGR*
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mRNA from alignment at Ecto-sp13_S_contig12123:496..4806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12123.1803.1 ID=mRNA_Ecto-sp13_S_contig12123.1803.1|Name=mRNA_Ecto-sp13_S_contig12123.1803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12123:496..4806+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACGGCATGTTCAACCACGTGGTGTACGACGTGTTCATCAAGGGCGA GGACGACGTCAAGTCCGAAGAAACGGGGCTCCGCGGAATGTCCCGCTTCG GCGAGAACCTCACGGTCTTCTCCGAGAAGGGGCTGAAGTTCAAGTCAGTC AGCCCGCCGCGGGCACTAGCCCTGTCCCTCACCTCTTTGCCCTTAGACTA ACTTTTCGGTCCGAGTTGTCGCACGATGTTTTCCTGGCGTCGAGTATTGC TGTATCACTCTACGGTTCCGTTTGGTCATGTCTACCTCATGCATTCAAAC AGGGTAGTTGTGACGGATTTTTGCTTGTCGCTGGTCATTGTCAGTCGAGA GGCTGATAGCACGACGACGGATGTGTAGACTACGTAGTTGGGCAGCTTTT CGTAAGCGAATGATGACGCCGCCAAGTCGCCTCCGCCGCAAAGCTTTTGG CACCCCAACCCTGTTGATATCGCTGGTGACAGCCAGTCATCTTGAAGAGT CGAACATTGCTGTTGATTGTCATCCATGTGATCCTTCAACTGCCTTCCTT CTTTGTGCTCGATTTTCTGTCCCCGGTTTGTCCTGAAATATTTCATTACA TTCGTTTCGGAAACTTGGGGGGGGGGGGGGGGATTCGCTGGTTGTGAATT TCGGGGCGGGTGGGCGACATGTCGGGCGTCAGCTACGTCAACAAGAAGGG AGAGAAGAAGCAGGAGTACGACTTCACCGATGACTACACCATCGTGAGTG TGCGGTATATGCAAGCATGCTTGTTGCGCACACGCGTTTCTGTTTCAATT TGATCGCTTTGCTTTCTTTTTTTGCATGCCGGGAGATGTGATGACACAAA ACAAAAAAAAATTTACAAAAAAATGTTTTCCGCCGTCACCTATCGCAGGT GGCAAACCTGGTGTGCAGTCCGGACTCGTTTTTCAGCGCCGAGGACAACT GGTTCGGGTTCATTGGTCTTTCCAAGGACAAGAAAGAGGTGGGTGTCTTG GACTTGTTGATGCCCTCGTCCTGGGGGATAGGCACCTCAGCGGCGCGACT GCTGTCTGTTCCTTGGAACCAGACTTGTCTGTTGCAAGTCGTTCGTGTTT CCTGGGGCTCTCGACAGAAATCAAGGAGTTGGGGGTGAGGAGTTTTACGC GAGATCGCTTCAGGTAAAGAAACAATCGATTTGGCATCGGTACGCAGCTG ACGAGGAGACACCTCTGTGGTGGTGTGAGTCAAGGGATACCGTATATGAC CGTTTTTTTTTAGATGGGCACGACAACACCAAATTGTAGTCGTCGCATCG ACCTGCGCATGGGGAACGTGTGGCAATAATGCTTTAGCTCGTTCTTGGTC CTTGACAAAATAGCGACGACCCACTCTGCTTTTTTCCCCATACTTGGATA AAGGAGACGACGACGAAGGGAAAACATTCGCAAACGTACCCACCGCTCTA ACCAGCCCTTTCCGTCGCACAGTTAGTCACGTCCGCCTCTTCCTCCTCTT ATTATTTACAAATACTCAGCAACATCGGTTTCTCCTCATTCTCCTTTCCG TGGCTGTTTTTCGAAGCAGTTGGTCATCGTGTTCCGCGGGACAGAGACCA CCAAGGAGTGGATCGAGAACGCCACCGTTTTCATGGAGCAGCTCGACGGC GAGCCCCCGGAGTCCGGCCTCGCCCTCTTCCTCAATCGCAACGTGGGTCA GCTTAGCTTGTCGAAAAATGTACATGAGAGCTTGCCACGGCATGTTTGCT TTTGCAGCGAGAACATCGCAGGGGGGCGTTCTCATTTGTTTGTTGTTTGC ATGGAGCGATTCTGACTGGTGGAAGGCTCAATGTCAAGTCATTTGCAAAC ACCAGTATCTGGGCGACCCTGGAATAGTCGGATCATTGTACACACCCAGG GGTTGTGCACTGAACCAGGGTGAACATCCCAGCATTGACCAGAAGATGTT GTAGAGAAGAAGCACCGCCTCCTCTCTCCGTTGAAACAACAACCATACTT GGGGGGGGCACTCTGGTGTTTTTTTTAAGAAACACAGACAGTAGTATTTG TCGCTACACTGCGGCAAGTGGAGGCTTTCCTACTCCCGGCATGCAGCGCC AACTCCCACATGTTGTTGTCCTCCCTGTCTCTCCCACAAACCGGGGGGAC CATAGCAAAGCACAGGGTTGGAGAAAGGCCACGCAGACCACCACAAAGGT GCATTCACAATCTGAAAGCCTTTAGACCAAAGAGCCGCCTGCCTGCGTTC GTTGGTATAACCCTTGCGTGTGGAAACCGGTGTGGCGTATGCGACCATTT TTTTTTTTTCACCTTCTCTTTGCATGCGCGCATGTCCGTGCTTTTTTCGT GCGGCGACGGCGGCGGCGACAGACACTCATGGTCCACCGCGGCTTCCAGC AGCTCTACCGGGAGAAAGCGGACCATTTCCCATCCCCCAAGGACAAGATA TACGAGGTGATCGAGGCCCTCAAGAACGACGACGAGGTTTCCATCGAGAA GGTCACCGTCGTCGGACACAGCCTGGGCGCTGGTAAGTCAAGCCTCAGCG GAATCCGTTTCTTCATGCCAAAGTTTGCCGCCTCCAATCGTCTGCGTGAA GATTCTTGGAGGGGCGGGGGGGGGAGGGGTCCCTACGCGCGATGTTTGTG TCGTTTGGCCGACGGCAGAAGGGATGGGATGTTTGTTGGTATCATCATGA TCGTATGTGCACCACAAGCAAAAAATAACTCGAAATTCTACCGAACGGAT TTTGGGGTACAGCGGTCAGCCCTTCAGGTGACTTGGATTCCGATTTACGA TAAGTATACTACGGAGTAAATATGAGACGTACAATATAGGTTTGTCAGAA CCAAAACTTGCGCTGACTAGCTTTAACGATTTGCTTTCGGCTTTTATAAC AACGCATCTCAAGAGCTCAGCCCGGGTTGCGAACACACGGCAATATAGCT TTATTTTAGCCAATACCAAGCCAAAGGTCTAGTCAGCTTTTGACTGTTTT TCTGGTTTTTGGCTTCCATCGGGCTATGGTCTGGGGAAAGACGAGGGCAT GAATTCTTGCAGTCGAGACACAACAGTAGCACCGCTGCTTCTCCCCCACA CGCCCTGAAGTAGAGGCCACAAATGTTTATAAAAACGCCTCGTGATCGAA ATATTTGTTAATTCGACCATGGTTCCCGTGTCGTCCTCGTTTCTGTCGTG CCGTGTTTGCCTCTTTATCTATCGGCTGCGTGTTTCGCCGTTCGGAACGT CTGGGTCTGGGCGGTTGGGTGGATGGTGAGGCGGGCGTGGATGCCAAGGT CCGCCGCGTCTTGTGTGCGAATCCCTTTTACCCCCTCCCCCATCTCCGGA CAACAACAACAACAACAACGAAAACAACCTCCGTCCGACGGCCTCTTTGT GTGCGTATGTGTTTTGCCAACGTTTCAGCCATGGCCCAGCACTGCGCGGT GGACCTTGCGCACTCGCGCGTCCTAGGAGACGTTCCCATTCTTGGCCTGA GCTGGGCCGGACCTAAAGGTGGCAACGCTGCCCTAGCAGCCTGGGTGGCG AAGCAGCCTAACCTGCGCATCCTGCGGGTCAGGGTGCCCATCGACTTCGT CACGAACGGTGAGCTCTGTCGGCGTCAAGTTTGTTTCCTTTTTTTTCGTG GTTCCTGTATGATGCTTGCTTGCGTTTTTTGTTCGTGTTTTTTTTCTGTA TGAATACGCACGTGGCTGTGGGGGGCGCGGAATGGGGGCTCTTGTTTTGT TTGTTGTGAGAAGAAACAAGTGTAAATTTTGGTTAATTCGTCTTCAAGCG TGAAGCATGTTTTTTGTGGTTGTGGGGAAAGAGATGCGTACCGGGTAAAA GAGGTTAGCTGCTCTTCTAACGTTCGTGTTTTGTTGTGGAACGATTGTTG GCGAGGTGCACGCCTGAATATGTCGCAGCCTGTACGAAGGATGCGCGTTA CGTGAGTTGATTTCCTCAACACATTTTCCCTTCTGATCATGACACACGCA CCCTCCATGCCCACGTCGCGGTAACGTTGGCGCGCCAGACTTGCATCGTG CGCAACAGCAGATGTAGTTGCCACACCCCCTCATCGTCCCCCCGCCGCGA TTGTTGACCGTTTTTTTTTCGTTCTCTTTGCTCGGTTACTGAATGCCGCG ATTGATCCTGAAACCCCGCACCAGTTCCGCCTGACTGGATGTGGAGCATC ACCGCCGGGGGCTACAAGCACATGGGCACGGAGATTACCCTCGACAACAC GCACTTGCACGAGGCGGGGGTCGTCAAGAGCGACGGTGGGTTGCCGGAGA GCGGGAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12123:496..4806+

>mRNA_Ecto-sp13_S_contig12123.1803.1 ID=mRNA_Ecto-sp13_S_contig12123.1803.1|Name=mRNA_Ecto-sp13_S_contig12123.1803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12123:496..4806+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCAACCACGTGGTGTACGACGTGTTCATCAAGGGCGAGGACGACGT
CAAGTCCGAAGAAACGGGGCTCCGCGGAATGTCCCGCTTCGGCGAGAACC
TCACGGTCTTCTCCGAGAAGGGGCTGAAGTTCAACTACGTCAACAAGAAG
GGAGAGAAGAAGCAGGAGTACGACTTCACCGATGACTACACCATCGTGGC
AAACCTGGTGTGCAGTCCGGACTCGTTTTTCAGCGCCGAGGACAACTGGT
TCGGGTTCATTGGTCTTTCCAAGGACAAGAAAGAGTTGGTCATCGTGTTC
CGCGGGACAGAGACCACCAAGGAGTGGATCGAGAACGCCACCGTTTTCAT
GGAGCAGCTCGACGGCGAGCCCCCGGAGTCCGGCCTCGCCCTCTTCCTCA
ATCGCAACACACTCATGGTCCACCGCGGCTTCCAGCAGCTCTACCGGGAG
AAAGCGGACCATTTCCCATCCCCCAAGGACAAGATATACGAGGTGATCGA
GGCCCTCAAGAACGACGACGAGGTTTCCATCGAGAAGGTCACCGTCGTCG
GACACAGCCTGGGCGCTGCCATGGCCCAGCACTGCGCGGTGGACCTTGCG
CACTCGCGCGTCCTAGGAGACGTTCCCATTCTTGGCCTGAGCTGGGCCGG
ACCTAAAGGTGGCAACGCTGCCCTAGCAGCCTGGGTGGCGAAGCAGCCTA
ACCTGCGCATCCTGCGGGTCAGGGTGCCCATCGACTTCGTCACGAACGTT
CCGCCTGACTGGATGTGGAGCATCACCGCCGGGGGCTACAAGCACATGGG
CACGGAGATTACCCTCGACAACACGCACTTGCACGAGGCGGGGGTCGTCA
AGAGCGACGGTGGGTTGCCGGAGAGCGGGAGATGA
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