mRNA_Ecto-sp13_S_contig1211.1795.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1211.1795.1
Unique NamemRNA_Ecto-sp13_S_contig1211.1795.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1211.1795.1 vs. uniprot
Match: A0A6H5JHS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.090e-8
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 3 
Query:    3 GARSAGKEEERVERQGSAALGPFSFDECALLEELFFT 113
            G RSAGK+EERVERQGSAALGPFSFDE +LLEELF +
Sbjct:   10 GPRSAGKQEERVERQGSAALGPFSFDEFSLLEELFMS 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1211.1795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHS8_9PHAE3.090e-883.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1211contigEcto-sp13_S_contig1211:172..3813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size651
Hectar predicted targeting categorymitochondrion
Exons2
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462643.9645324-UTR-Ecto-sp13_S_contig1211:171..4951681462643.9645324-UTR-Ecto-sp13_S_contig1211:171..495Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1211 172..495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462643.9732792-CDS-Ecto-sp13_S_contig1211:495..7131681462643.9732792-CDS-Ecto-sp13_S_contig1211:495..713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1211 496..713 -
1681462643.9816008-CDS-Ecto-sp13_S_contig1211:3704..38131681462643.9816008-CDS-Ecto-sp13_S_contig1211:3704..3813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1211 3705..3813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1211.1795.1prot_Ecto-sp13_S_contig1211.1795.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1211 496..3813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1211.1795.1

>prot_Ecto-sp13_S_contig1211.1795.1 ID=prot_Ecto-sp13_S_contig1211.1795.1|Name=mRNA_Ecto-sp13_S_contig1211.1795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MGLGRLGRRKNGWSGRALLLLGRFRLTNVLSSRSCSSRLFRPSASSRDQH
GSSSCSVMEYAVAKKCKTLPKRRLSASDLGGYCTFSLRCVRRELIRSPCW
RGLGYGQA*
back to top

mRNA from alignment at Ecto-sp13_S_contig1211:172..3813-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1211.1795.1 ID=mRNA_Ecto-sp13_S_contig1211.1795.1|Name=mRNA_Ecto-sp13_S_contig1211.1795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1211:172..3813- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCTCGGTCGGCTGGGAAGGAGGAAGAACGGGTGGAGCGGCAGGGC
TCTGCTGCTCTTGGGCCGTTTTCGTTTGACGAATGTGCTCTCCTCGAGGA
GCTGTTCTTGTGAGTGCAGTCGTCGACAGTAGGAGCTGTCCAGCTTTTCA
ATTGTTTGAGTGCGGCTTCGTGCGCACTTCTCTACGATCGCCCAACCTAC
TCGTGGGCTGCATAATTTTGCAAACGATTCCTATGCGAACATACTGCTGT
AACGTGCGCACGACCAAGTTCTAAACATGGCGCGGTAGGCAGTGCCGCCC
ATGGCAGTTTGAGCATTCGAGCACAGCAGTAGTGTTGTGTGTTGTGACTC
CGCCGCGCAAAACGCCGCGTGGTTGAACTGATAAGAGATTAGCGAGGCTA
GCGCTTCCTGTGTCGGGGCGCTCTTCACTCACGTGTTGCAATGCACTTCC
TCGTTACTCGTGCATATATTTGATGAAGTGAAACGGCTTGGGTGATGGCA
ACACTCGTATTAGCAGCATTGAACAATCGTAGGCGGTCAATCGTAGGCGG
TGTTGTGATAAGTGTGTCCTTCGCGATGGGGCACCCTTTGTGCCGCAGCA
CCCAGACAGCTGTAGCCAGCTCCTATCGTTGGTGCTCCCAACACAATGAA
TACGCCAAAGACCATCGCTCTTCGTAGCTGCTGCTTGGCAGTGGCTTTGT
GTAGAGTATTTACCGAAAAGACTAGCCCGTGGAGCAGGGCCGGCGCTCGG
TCGTCGGTAGGTGGTGTCACTCACAGTCCCGTCCTTGCGGTAAGCGGTGT
TACTCGTACATGAGTTAAGTCTCGTTTGTTTTTCCAATATTTATCATTCT
CTTGCTCTTGCAGGGCTGCTTCCAATCCTCCGTGGTCCGCTTTCCTTTGA
TCCTTTGAACAGATTGGATTTCGTGCGTGACAGTGCGACGAAACGACGAA
AACATATTCCAACGGGAGCGAGGGTGTCGCTTTCTCTGTCGCGGAGTCCT
CTTGTTCTACTAATGAAAAATGCGAAGTGTTTTACACCATCATGTCTCAC
AGCGGATGGATGTACAGTATTAAATATGCCTACGCCAGTTAGTAGTGGGC
TATAGCCTTTCTTCTTTTCTTGTGCGCTGGTTAGCGCCTGTTTGGTGGTT
GTGGATGTCAAAAAGGCAGGTAGGGCTGTCCTCGTCAATTTCTCGTAATT
TTACCAAAAAAGCCGTGGTTATTAGCGTTTCCCGTCATTCCGTAAAAAAT
GAGAACTATCGTTCCCATCCACATCGTTTTCGTGCTACATTGAGTTTACC
GTGAGCGCCCAAACCGTTAACGAACACATTCACATTGAAGTGCCCCATCA
CAGTACACAAAATTACCGCGGAAAAAAAATCGTAGTTCCCGTGCTTTCGA
GTTACCGCGGAGTAGTTACCGTAAGAGCAGCACAATCCCATCTACAGTAC
CGCAAAGAAACACTAGTTGCATTATTTGTTACACCGTTGAATAATTCCAC
CGTTTCTCTGTGGACGAGGAAGGCGGCGCTTGCTTGTTACCTGTCGTGTT
GATGATATGTTATTACTTGGCGCATGATCGACTTATTACGTCGTCTTGAG
GCCACGAGAGCCTGTCAACGCAATGAAGTGGATACATGCTGTCTGTTTTT
TACCCTTCTTCTTTTGCCACCGGTTTGGTTGACGGACGTGATGCTCGGTG
AATGAATGTGCCTCGCACATCTGGTGTGCGGCGACCACACCCTTCAGGAA
CACTTGAAAGCAAGCAAACGAAACAGGGCCCGACGTGGCATGGTGGTGTG
GTTAACTGTACAAGTTGTTCCGTGCGTGGTGACCAGTTACGGTAGCAATG
AAAGCATATTTCTGTGCACTACTACTACTGTGGGGTTTGGTTACCGTACA
AGAAAATAACCGTGTTGACCAGTTACCGTAAAAACATGCATATTCTTGTG
CATTGCCGTGATGGCTGGTTGCCATACTAAAAAATTGCCGTGGTGACGAG
TTACCGTACGGAATTTACCGTGGTGGCCAGTTGCCGCCCAAAAATTACGG
TACTGTGCCGTGGTGGCCAGTTTCCGCCCAAGAATTACTGTACTGTGCCG
TGGTGGCCAGTCGCCACATGGAGCATGCCGTGGTGGCCAGTTACCGCCCA
AAAATTACTGTGTTGTACCGTGGTTTCTTGCTAACGAGGAAAATGATTCC
GACATGAAAAGTCGTTAACGAGGACACCCCTGCAAAAGGGTGCGTTTTGG
AGCGAGCGATGACCGGCCGTGCTTCTTCACACGCCTGTGCCTATCTATCC
ACTGTGCAGCTCTGCTGCAGCAGTGGTAGTAGCTTGTAATAATGTAGTCT
ACACTTCAAGACTACACACACTGCTGCTGCTATACAAGTGATCGCCTCGT
TTTCACTATGGAGGCTGGAGAGACGCACAAAAAGTTCCTTGGACAAATAC
TTGTAGTTGTCGTATACCTACATTACAGCAAGCAGTAGTAGTGTATCGTA
GGAGCTGTAGGGATGTATGTGGCTGCGGATGGACGGACGTGTGTGCTGTG
CAAAGGCGTGCATCCTGTTACAGCAGCTGTAGTAGTAGGAACGGTACACC
GGATGAATCTATCTTCTTCTATGCATATTACAGCAGCATGTCCGCGTTGG
AGCCGTACTACTGCTGCTGCTGTAGGTGCTGGTAGATGTCAGGTACAGTA
CATGCTGCTGTACAGTAAAAGAAGAATGCCATGGATTTCAGTTTTGAATT
TTTGGAGGGGTTCATCGGCAGCAGAGAGACCAAAAAAATCTTTGGTGTGC
TATGCATACAATTACTTGAGAACAGAGCACGGGCAATTGGAAACTATATA
CTGCATACCCGACACGCAACAAAGCTAAGGAGTGTGACACACACAGGTAC
GATAGAGCTGTGTTAAGCACGGCCGACTCCTTACGTGAGAATTAGATACA
GGGACTTTCATGAGCGGGATGCGGAGTTATCGATGCGGCAAAAAGTTAGT
GTGCTGGGCAGCGCAGGGCAACTCGACCCGCAAATCAGCCGAAACGATGT
TCATTGCCTTGTTCGCTCCCTCGCCACCGTCCTTGCCGATACTTGCGCAG
CACGCCTATTTCGTCCTAGCGCATCGAGCCGCGACCAGCATGGGAGTTCA
TCTTGCTCGGTTATGGAGTACGCCGTGGCGAAAAAATGCAAGACGTTGCC
CAAGAGGCGCCTCAGCGCCTCTGATTTGGGGGGGTATTGTACTTTTTCGC
TGCGCTGCGTGCGACGCGAGTTGATACGCTCGCCGTGCTGGCGAGGACTG
GGGTATGGGCAGGCATGACCACGAACGCCGTCGTCGTGGCAGTTGTGCAG
CGTTGTTGAGCTCGAAGAATTCAGCCGCAGAGAAGCAGAGTAAACAGGTG
TCAACACTAAGAGCAAGTTAAAGGGATTTTGAGCGAGACAAAATGCTTGG
GTTTGGCGCCGGTGTCGCTTCGATTGAAATTTCTTCGACAGGGCTCTCGA
GGGGTAAGTCTCGCGAAGGTACCGCCGCGATCTCATGCTCGTAGCTTTCG
CGAGCCGAGAGAAATCAGGTCATTTTTCTCCGGTCAAAGTTCCTTTTAGC
TTTTTTTCCCTTAGCTGAAACCAATCCTAAACGGATCAGAAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1211:172..3813-

>mRNA_Ecto-sp13_S_contig1211.1795.1 ID=mRNA_Ecto-sp13_S_contig1211.1795.1|Name=mRNA_Ecto-sp13_S_contig1211.1795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1211:172..3813- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCTCGGTCGGCTGGGAAGGAGGAAGAACGGGTGGAGCGGCAGGGC
TCTGCTGCTCTTGGGCCGTTTTCGTTTGACGAATGTGCTCTCCTCGAGGA
GCTGTTCTTCACGCCTATTTCGTCCTAGCGCATCGAGCCGCGACCAGCAT
GGGAGTTCATCTTGCTCGGTTATGGAGTACGCCGTGGCGAAAAAATGCAA
GACGTTGCCCAAGAGGCGCCTCAGCGCCTCTGATTTGGGGGGGTATTGTA
CTTTTTCGCTGCGCTGCGTGCGACGCGAGTTGATACGCTCGCCGTGCTGG
CGAGGACTGGGGTATGGGCAGGCATGA
back to top