mRNA_Ecto-sp13_S_contig1210.1789.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1210.1789.1
Unique NamemRNA_Ecto-sp13_S_contig1210.1789.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Match: D7FN46_ECTSI (50S ribosomal protein L5, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN46_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 6.270e-121
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1 
Query:    4 AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 519
            AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG
Sbjct:    2 AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 173
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BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Match: A0A7S2V4A8_9STRA (50S ribosomal protein L5, chloroplastic n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A8_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.080e-94
Identity = 136/165 (82.42%), Postives = 151/165 (91.52%), Query Frame = 1 
Query:   19 NPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            NPMR ++VDKLVLNCSVGESGDRLTRA KVLEQLTGQ+P  SKARYTVRSFGIRRNEKIACHVTVRG+KALEILERGLKVKEYEL+R+NFS TG+FGFGIQEHIDLG+KYDPSTGIYGMDFFVVL RPG RV KRKA+ +++G  H++ K DA+KWFQ KFEGIV
Sbjct:    8 NPMRAVQVDKLVLNCSVGESGDRLTRAIKVLEQLTGQTPCVSKARYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELRRRNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLRRPGNRVGKRKARQSRMGAPHRLAKDDAIKWFQQKFEGIV 172
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BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Match: B7GB09_PHATC (50S ribosomal protein L5, chloroplastic n=3 Tax=Bacillariophyta TaxID=2836 RepID=B7GB09_PHATC)

HSP 1 Score: 280 bits (717), Expect = 1.640e-94
Identity = 133/170 (78.24%), Postives = 154/170 (90.59%), Query Frame = 1 
Query:    4 AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            +E KTN MR++KVDKL+LNC VGESGDRLTRAA+VLEQLTGQ PV+SKARYT+RSFGIRRNEKIA HVTVRG+KALEILERGLKVKEYEL +KNFS+TG+FGFGI EHIDLG+KYDP+TGIYGMDFFV L RPG RVA+RK +  +IG+ HK+TK D++KWFQ KFEG+V
Sbjct:    2 SETKTNAMREIKVDKLILNCCVGESGDRLTRAARVLEQLTGQQPVFSKARYTLRSFGIRRNEKIAVHVTVRGEKALEILERGLKVKEYELLQKNFSDTGNFGFGINEHIDLGIKYDPTTGIYGMDFFVCLTRPGARVARRKIRQGRIGFNHKITKEDSIKWFQDKFEGVV 171
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BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Match: A0A1Z5JJ06_FISSO (50S ribosomal protein L5, chloroplastic n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ06_FISSO)

HSP 1 Score: 280 bits (717), Expect = 1.700e-94
Identity = 134/170 (78.82%), Postives = 152/170 (89.41%), Query Frame = 1 
Query:    4 AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            AE K NPMRD+KVDK+V+NC VGESGDRLTRAA+VLEQLTGQ PV+SKARYT+RSFGIRRNEKIA HVTVRG+KALEILERGLKVKEYEL  KNFS TG+FGFGI EHIDLG+KYDP+TGIYGMDFFV LNRPG RV++RK +  ++G  HK+TK DA+KWFQ KFEG+V
Sbjct:    2 AETKANPMRDIKVDKMVINCCVGESGDRLTRAARVLEQLTGQQPVFSKARYTLRSFGIRRNEKIAVHVTVRGEKALEILERGLKVKEYELLDKNFSETGNFGFGINEHIDLGIKYDPTTGIYGMDFFVCLNRPGTRVSRRKIQQTRMGKNHKITKQDAIKWFQDKFEGVV 171
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BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Match: A0A0D3AUD9_BRAOL (Uncharacterized protein n=10 Tax=Brassicaceae TaxID=3700 RepID=A0A0D3AUD9_BRAOL)

HSP 1 Score: 279 bits (714), Expect = 5.780e-94
Identity = 132/166 (79.52%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            +NPMRD+KV KLVLN SVGESGDRLTRA+KVLEQL+GQ+PV+SKARYTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    8 SNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Match: A0A0J8BKL6_BETVV (Uncharacterized protein n=6 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0J8BKL6_BETVV)

HSP 1 Score: 279 bits (714), Expect = 5.780e-94
Identity = 132/166 (79.52%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            +NPMRD+KV KLVLN SVGESGDRLTRAAKVLEQL+GQ+PVYSKARYTVRSFGIRRNEKIAC+VTVRG+KA+++LE GLKVKEYEL R+NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    8 SNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Match: A0A0K9Q188_ZOSMR (60S ribosomal protein L11-1 n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0K9Q188_ZOSMR)

HSP 1 Score: 279 bits (713), Expect = 7.670e-94
Identity = 132/165 (80.00%), Postives = 153/165 (92.73%), Query Frame = 1 
Query:   19 NPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            NPMR++KV KLVLN SVGESGDRLTRA+KVLEQL+GQSPV+SKAR+TVRSFGIRRNEKIACHVTVRG+KA+++LE GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFFVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARFTVRSFGIRRNEKIACHVTVRGEKAMQLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Match: A0A7J6V5X0_THATH (60S ribosomal protein L11 n=3 Tax=Spermatophyta TaxID=58024 RepID=A0A7J6V5X0_THATH)

HSP 1 Score: 279 bits (713), Expect = 8.210e-94
Identity = 133/165 (80.61%), Postives = 152/165 (92.12%), Query Frame = 1 
Query:   19 NPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            NPMRD+KV KLVLN SVGESGDRLTRAAKVLEQL+GQSPV+SKARYTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL R+NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFFVVL RPGYRV +R+   ++IG QH+VTK DA+KWFQ K+EG++
Sbjct:    9 NPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRIGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Match: A0A0K9NLH5_ZOSMR (60S ribosomal protein L11a n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NLH5_ZOSMR)

HSP 1 Score: 278 bits (712), Expect = 1.090e-93
Identity = 130/167 (77.84%), Postives = 155/167 (92.81%), Query Frame = 1 
Query:   13 KTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            ++NPMR++KV KLVLN SVGESGDRLTRA+KVLEQL+GQSPV+SKAR+TVRSFGIRRNEKIACHVTVRG+KA++++E GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    6 QSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARFTVRSFGIRRNEKIACHVTVRGEKAMQLIESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRAKARVGIQHRVTKDDAMKWFQVKYEGVI 172
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BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Match: A0A1S4CT55_TOBAC (60S ribosomal protein L11-1-like n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CT55_TOBAC)

HSP 1 Score: 278 bits (712), Expect = 1.130e-93
Identity = 132/166 (79.52%), Postives = 153/166 (92.17%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            +NPMR++KV KLVLN SVGESGDRLTRAAKVLEQL+GQSPV+SKARYTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL R+NFS TG FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    8 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1210.1789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN46_ECTSI6.270e-121100.0050S ribosomal protein L5, chloroplastic n=2 Tax=Ec... [more]
A0A7S2V4A8_9STRA1.080e-9482.4250S ribosomal protein L5, chloroplastic n=1 Tax=Fi... [more]
B7GB09_PHATC1.640e-9478.2450S ribosomal protein L5, chloroplastic n=3 Tax=Ba... [more]
A0A1Z5JJ06_FISSO1.700e-9478.8250S ribosomal protein L5, chloroplastic n=1 Tax=Fi... [more]
A0A0D3AUD9_BRAOL5.780e-9479.52Uncharacterized protein n=10 Tax=Brassicaceae TaxI... [more]
A0A0J8BKL6_BETVV5.780e-9479.52Uncharacterized protein n=6 Tax=Chenopodiaceae Tax... [more]
A0A0K9Q188_ZOSMR7.670e-9480.0060S ribosomal protein L11-1 n=6 Tax=Mesangiosperma... [more]
A0A7J6V5X0_THATH8.210e-9480.6160S ribosomal protein L11 n=3 Tax=Spermatophyta Ta... [more]
A0A0K9NLH5_ZOSMR1.090e-9377.8460S ribosomal protein L11a n=1 Tax=Zostera marina ... [more]
A0A1S4CT55_TOBAC1.130e-9379.5260S ribosomal protein L11-1-like n=4 Tax=Nicotiana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1210contigEcto-sp13_S_contig1210:12935..16441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score335.1
Seed ortholog evalue1.8e-89
Seed eggNOG ortholog2880.D7FN46
Preferred nameRPL11
Model size522
KEGG koko:K02868,ko:K10523,ko:K15076
KEGG Pathwayko03010,ko04340,ko04341,map03010,map04340,map04341
KEGG ModuleM00177,M00384
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032092,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042176,GO:0042177,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0042886,GO:0042975,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043433,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051090,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0055105,GO:0055106,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901799,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons5
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0094@1,KOG0397@2759
Ec32 ortholog descriptionRibosomal protein L5
Ec32 orthologEc-06_008360.1
Cds size498
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1210.1789.1prot_Ecto-sp13_S_contig1210.1789.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1210 12959..16441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462643.5920985-UTR-Ecto-sp13_S_contig1210:12934..129581681462643.5920985-UTR-Ecto-sp13_S_contig1210:12934..12958Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1210 12935..12958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462643.6024365-CDS-Ecto-sp13_S_contig1210:12958..130821681462643.6024365-CDS-Ecto-sp13_S_contig1210:12958..13082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 12959..13082 +
1681462643.6106453-CDS-Ecto-sp13_S_contig1210:14284..143461681462643.6106453-CDS-Ecto-sp13_S_contig1210:14284..14346Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 14285..14346 +
1681462643.6193738-CDS-Ecto-sp13_S_contig1210:14678..148291681462643.6193738-CDS-Ecto-sp13_S_contig1210:14678..14829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 14679..14829 +
1681462643.6293058-CDS-Ecto-sp13_S_contig1210:16070..162011681462643.6293058-CDS-Ecto-sp13_S_contig1210:16070..16201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 16071..16201 +
1681462643.639298-CDS-Ecto-sp13_S_contig1210:16411..164411681462643.639298-CDS-Ecto-sp13_S_contig1210:16411..16441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 16412..16441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1210.1789.1

>prot_Ecto-sp13_S_contig1210.1789.1 ID=prot_Ecto-sp13_S_contig1210.1789.1|Name=mRNA_Ecto-sp13_S_contig1210.1789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
MRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFG
IRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQE
HIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTD
AVKWFQAKFEGIVTG*
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mRNA from alignment at Ecto-sp13_S_contig1210:12935..16441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1210.1789.1 ID=mRNA_Ecto-sp13_S_contig1210.1789.1|Name=mRNA_Ecto-sp13_S_contig1210.1789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1210:12935..16441+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGAGATCAAGACCAACCCGATGAGGGACCTGAAGGTCGACAAGCT
GGTGCTTAACTGCTCCGTCGGAGAGTCGGGTGACAGGCTGACGCGCGCAG
CGAAGGTGCTGGAGCAACTCACGGGCCAGTCGCCCGTCTACTCCAAGGGT
GAGGTCCTGGTGTTGATGATGACTTGTGTGCATAGTGGTGCATATTCATA
CGCAGAGCTGGGGCCATCGCTTTGTACAGCGGGAAGACGAACAGACATTC
CGTCTACTTGTACACCCTACCAAGTCTTGATGGTATATGTAAATGGAAAG
GTTGGTCGGTAGTGTCTTGAGTCACCTTTGATCGTCCATCAACTACATTG
ATGCCCTCACGATCGCCCCCCAACCCCCTCGGGCTTGTCTGGTCTAGGGG
CAATTCGCTTGAGGTGCCCAGCTGTCTACAGCAGTACAACGTGTGTCAGT
CACCGTGCGGTGATTTGCGAAGGGGTGTGCTCGTCGACACGCCACTGTGT
GGGTAGAATATCAAATTTGAAGTCAGCAAGCGTTTGTCGAACTCTTATGT
CTTGATCGTGAGCAGCAGTGAAGCAATATCTCAAAATGAAGTATGAATAC
TAGTATGCTTAAAATACGAGCAGCTTCCTTCTCAACCTAACTTCTATGAA
GTCCACCTGTGCGCTTGCTCCCGGCTGTTGGTTGGTGCTCAAAAGCGGTC
GAAACTCTCGCACGAGTGAGGTCTGCCATGAAACGCTTTACCTGTAAGTT
CCGCAGTGATGCTCCGTCGATCACTAAAAACTTGTCGATGCCCTACTTTG
TTTTGTGAGCGTGGTACTTGATGTATTTTGTCTGAGCATGGTCCACAGCA
TTATATGGCCTCGGGGGATGATGAGACGCCACCGCTTTGTGTGTCGTTGC
TGTTGGAGGTGGACGGCTAGGTAAAGGTGGATATTGAGCCAGAAATACGG
ATGCCAATCATGGCCCAGAATGTCGCGGAGACGCTAGTGTTTCTGTGGTC
GGCGGTGTGCGTTTTTCCCCTCAGTAGATGGGTCAGGCATCGTATTATGC
CTAGACTGTCACGTTGTTCCGGTAATGGGTCATCGGCGAAGGGCGGGCTG
CTGCATCTGGGTTGGCAAAGTTCGTTGACGGCACCGGGAATCAACTGCGA
AGAGGTTGTGGAGCGTTGAAAGTTGACAATTTTCGAAACACCGATGTCTC
TTACTCCCATGTTCGACGACAGACAGGCTTCTAATTTGGCGCCCCACCTG
TTCCCTGCTGGCATCCGGGAAGAATCCCCTGAGTAGTAACACATGCCCCA
ACCCTCCCTTGTTTTCCGTGTCGGTGTTTACCAATCGCCACGTTGTGCAG
CACGCTACACGGTTCGTTCGTTCGGAATCCGGCGTAATGAGAAGATCGCG
TGCCACGTGACGGTAAGAATGCCTAATGAGTAGAGTTGTTTGTGAACCTG
TTGGTTCACGTGGCGTACGCGTGCGTTTGGCATTACCATCCTGTCTCATG
CACTGTCATCGGTACGATCCGTCCTTGAACATGTGCGTGTACCAGGATTT
TCATAGGCAGTCCCGCGTGATACCGATGATTTTGACTGTAGACGTGTGCA
TATCCCTCGTATGCATGTCCCCGAAAACTGAAAAAACGATGAATCTCTCA
TCTGCTGTGGTTCGCTTGAAATGTTATTTGTCCAGCGCTCTGCTGCGCTG
CCTGGTCCTGATTTCTGTTCCGTTGATACTATCTGGATGCGCAGGTCCGC
GGCGATAAGGCGTTGGAGATCCTTGAGCGAGGGCTTAAGGTGAAGGAGTA
CGAGCTCAAGCGTAAGAACTTCTCCAACACCGGCAGCTTTGGCTTTGGTA
TCCAAGAACACATCGACCTCGGACTGAAGTACGACCCATCCACCGGTAAG
ATTTTCATCTGCATACTGCACCCCATATAGTGACCCTGTGCCTGCCAATA
ACCCTGCTCAGGACCCCGTGCTGAAGCCGAACAATGTCCACCCAGTGCAA
AGTTAAAATTGTGTGCGATTAGAGAGTGCAACCCACTGCTGGCAAGATTT
CTTGCTTTCTATCGGCTACAAACACGGAGTGAGGCGTGCAGATCTTTCGC
TCGTATGTGAAAAATTACTGCTCCGGATAGAGGGATTGAATCCTCATACG
GCAGCAACCACAGTAGGACTCGTACTTATACGGCGTGCCGAAGTTCCTCC
TGCAACAAGCTAAATTCTGAGCTTAACTCATGAACAGTGAATAATAGGTT
GGCATGTTAATATAGAATGTTTTGTCTAGCAATGCTGCCTTAGAACAACG
TTGTATTCGCGTAGACCCGGCCAACTGCGCCCTACTTAACGGACAAGGCA
GTGTGCTGACTGAGCTCAAACCCTGTCAATACTCGCGGCGCATAGACATG
CAATTTGTCTTTGCCTTTTTCGGCGTCTGGCTCTCTCCACCCTGGCTGTC
ACGGTACCATGTTGGCGGTGTGAGGTTCTAGTGTTAGAGCGTGCTATGCT
ACATACGCAATGAAACCCTTCGACTCGATCGCGCTCAATGTTCGAAGTAC
CGTCGGTTCAAAGCCATTTCGGGCGTGGTGTACAGCTTACTTTTTTCTCC
ACCATGCATCTTGAAACAGCACATGTGGGTGCCTCTTGCTTTGATCGTTG
GTGCTTGTTGTGTTTAACTAGAGTTATGCTGATTTTGTAGCCGCCGCCGT
CTTGCCCAAGTGCTAACATTGTCGAACATTCGCGTGAATTCGAGGACCCA
TCACAGTTAATTGTAGACGGTTGTGTGTGAAGAGCGACGCCCCCCAGCTT
GGGGCAAAGGTGCATATGTACTGTCTGGCCACGGTGGTATGTGACGCCAT
TGCACCGTCGCGTTATTTTTTCGGTGCCGGTTCGCTTGGTCCATTTTTTA
TGAAGGCTGTTTGTGATTACGTACAGTGTCCACCCCATGTTTCTTTGGGA
CCTACAGCTGACCCGCGCCGTTTCGTTCGCGATAAACGGTCGTCCTCTTT
GGCGCAAACCAGTATTCCTTGTCCACGGAGCGTGGCAGTTTTGAGCAGCT
TGCACCCTCTTCACACGTTTGGTGGATATCGTTGTTAAATTGTCGGTAGT
AAGTGAGCAACGACGACGTCCTCTTGCTCCTTGCAGGTATCTACGGAATG
GACTTTTTCGTAGTGCTCAACCGGCCGGGGTACCGTGTGGCGAAGCGCAA
GGCGAAGTGCGCCAAGATCGGTTATCAGCACAAGGTCACCAAGACTGACG
CCGTCAAGTGGTTCCAGGTGCCTCGCCTCTTCCCGTGTGTGATTTCAAGT
GCGATTTCAAACGTGTATCGACGATTGCCTGGGAGATTCTTTTTCCTCAG
CGATCAAATGACTGAATCAAGTTGGGTGCAACAGTCCCTGCCAGCCGCAA
GGGGGCGATTACTAATAGTTTCGTTGTGTTGTCTGACCACTAACGATCTC
TTCTCTTGCGTGTTTGTGCGCTTTCAGGCGAAGTTCGAGGGTATCGTGAC
GGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1210:12935..16441+

>mRNA_Ecto-sp13_S_contig1210.1789.1 ID=mRNA_Ecto-sp13_S_contig1210.1789.1|Name=mRNA_Ecto-sp13_S_contig1210.1789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1210:12935..16441+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGACCTGAAGGTCGACAAGCTGGTGCTTAACTGCTCCGTCGGAGA
GTCGGGTGACAGGCTGACGCGCGCAGCGAAGGTGCTGGAGCAACTCACGG
GCCAGTCGCCCGTCTACTCCAAGGCACGCTACACGGTTCGTTCGTTCGGA
ATCCGGCGTAATGAGAAGATCGCGTGCCACGTGACGGTCCGCGGCGATAA
GGCGTTGGAGATCCTTGAGCGAGGGCTTAAGGTGAAGGAGTACGAGCTCA
AGCGTAAGAACTTCTCCAACACCGGCAGCTTTGGCTTTGGTATCCAAGAA
CACATCGACCTCGGACTGAAGTACGACCCATCCACCGGTATCTACGGAAT
GGACTTTTTCGTAGTGCTCAACCGGCCGGGGTACCGTGTGGCGAAGCGCA
AGGCGAAGTGCGCCAAGATCGGTTATCAGCACAAGGTCACCAAGACTGAC
GCCGTCAAGTGGTTCCAGGCGAAGTTCGAGGGTATCGTGACGGGCTGA
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