mRNA_Ecto-sp13_S_contig1210.1787.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1210.1787.1
Unique NamemRNA_Ecto-sp13_S_contig1210.1787.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Match: D7FN44_ECTSI (Outer row dynein assembly protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN44_ECTSI)

HSP 1 Score: 658 bits (1698), Expect = 3.570e-230
Identity = 410/548 (74.82%), Postives = 426/548 (77.74%), Query Frame = 2
Query:   35 MDLTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFLEASGSSSSALLDTLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLKYLDDRPVFDDERRRCTAWSKGMTEGGISRAQEAEREEMAKIRESKRAAEQRQYLAFEQASLSLNRRYKKIHFQMMREGLEARKQAKPQSESSSKNAQASETSGQPEPPVVNDGIKVSISTAVQGQESPLGDTLNEHCEVSNTGSSVSGDGIFGRQEILPLPP-PPPN--------QMHPRGQQKSMVSNTMEERNTRVPRLVNEFSGEDIIPFSDCETVRNARKSRAARILAPSTSTHRAPSSDATDFPEGSGIRRSPGLDRVEPLDDDVCDLKKLSNDVDEEIRAFEAESQRXXXXXXXXXXXXXXXXTAKEQEVVQVGCNGNVKVTSKEHVAELYQEQATNFEELD 1651
            MDLTKA+LKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DSFLE                                                          TLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVK IRHYRKTLVSKCATLKYLDDRPVFDDER RC AWSKGM EGGISRAQEAEREEMAKIRESKRAAEQRQYLAFEQ               MMREGLEA+KQAKPQ ES S+NA+ SE SGQPEPPVVND  +VSIST  +GQESPL DT NEHCEV NTGSS+ GDG  G+QE LPLPP PPP         QM+PRGQQKSMVSNTMEERNTRVPRLVNEFSGEDIIPF+DCETVRNAR+SRAARILAPSTSTHRAPSSDATD PEGSGIRRSPGLD VEPLDDDV DL KLSNDVDEEIRAFEAESQR           XXXXXT K+QEVV+VGC+GNV+VT +EHVAE  QEQATNFEELD
Sbjct:    1 MDLTKAVLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSFLE----------------------------------------------------------TLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKSIRHYRKTLVSKCATLKYLDDRPVFDDERCRCAAWSKGMAEGGISRAQEAEREEMAKIRESKRAAEQRQYLAFEQ---------------MMREGLEAKKQAKPQHESLSENAEESEASGQPEPPVVNDSSQVSISTVQEGQESPLCDTSNEHCEVGNTGSSIGGDGTSGQQETLPLPPLPPPQNVVLGAIVQMNPRGQQKSMVSNTMEERNTRVPRLVNEFSGEDIIPFTDCETVRNARQSRAARILAPSTSTHRAPSSDATDSPEGSGIRRSPGLDHVEPLDDDVFDLTKLSNDVDEEIRAFEAESQRLREERILQNTPXXXXXTVKKQEVVEVGCDGNVEVTYQEHVAEFCQEQATNFEELD 475          
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Match: A0A7S3Y6C6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6C6_HETAK)

HSP 1 Score: 199 bits (505), Expect = 5.380e-54
Identity = 151/309 (48.87%), Postives = 183/309 (59.22%), Query Frame = 2
Query:   35 MDLTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFLEASGSSSSALLDTLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLKYLDDRPVFDDERRRCTAWSKGMTEGG-ISRAQEAEREEMAKIRESKRAAEQRQYLAFEQASLSLNRRYKKIHFQMMREGLEARKQAKPQSESSSKNAQASETSGQPEPP 958
            M++TK  LKK+CRD+  Y  P LNDKLYLHYKG R IQNL+EY  L+V+WLEG    XXXXXXXXXXXXXXXXXXXXXXXXXX                                                 TAD    VL+ PSL+TLD+QHN+I+D  +VD+V+ M +LRVLYLQGNPVVK +RHYRK+LVS C  L+YLDDRPVF+DERRR  AW++G   GG +  A  AEREE+ ++RE KR AE+R +LA EQ               MMREG E R     +    ++   A   +G P PP
Sbjct:   11 MEITKPYLKKLCRDNDGYGVPELNDKLYLHYKGFRCIQNLDEYINLKVIWLEGNGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXTADXXXXVLEVPSLETLDIQHNKIDDVGIVDVVTTMPNLRVLYLQGNPVVKDVRHYRKSLVSGCRELRYLDDRPVFEDERRRTDAWARGFRAGGTLDAANAAEREEIRRVREEKRCAEERNFLAMEQ---------------MMREGAELRLMRGEEERQRAEEQAACAAAGLPSPP 295          
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Match: K3WU80_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WU80_GLOUD)

HSP 1 Score: 172 bits (436), Expect = 3.270e-44
Identity = 134/268 (50.00%), Postives = 164/268 (61.19%), Query Frame = 2
Query:   35 MDLTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFLEASGSSSSALLDTLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLKYLDDRPVFDDERRRCTAWSKGM--TEGGISRAQEAEREEMAKIRESKRAAEQRQYLAFEQASLSLNRR 832
            +++ K LLKK+CRD  LY +PS+NDKLYLHYKG R I+NL+EYTGL+VLWLEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                         L  P+L  LD+Q NR+ D ++VDI++ M +L+VLYLQGN VVK I+ YRKTLV +C  LKYLDDRPVFDDERRR  AW K +  ++G    AQEAER+EM  IR  K+  ++  +L FEQ  +   R+
Sbjct:    2 VEMEKPLLKKLCRDMDLYVTPSINDKLYLHYKGFRTIKNLDEYTGLKVLWLEGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXLTLPNLSVLDIQSNRVTDVNIVDILAQMPELKVLYLQGNDVVKHIKQYRKTLVYRCRKLKYLDDRPVFDDERRRVEAWGKALDASQGDYKAAQEAERDEMDAIRREKKERDELNFLHFEQMMIEGRRK 260          
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Match: T0QTZ5_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QTZ5_SAPDV)

HSP 1 Score: 172 bits (437), Expect = 7.590e-44
Identity = 134/259 (51.74%), Postives = 165/259 (63.71%), Query Frame = 2
Query:   35 MDLTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFLEASGSSSSALLDTLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLKYLDDRPVFDDERRRCTAWSKGM--TEGGISRAQEAEREEMAKIRESKRAAEQRQYLAFE 805
            +++ K  L+KIC+D  LYS+PS+ND+LYLHYKG R+I+NLE YT L+VLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                        VL+ P+L  LD+Q NRI D DVVDI++AM +LRVLYLQGN VVK I+HYRKT++S+C  L+YLDDRPVFD+ERRR TAW + M  T G +  A EAER E+A IR+ K+  ++  +  FE
Sbjct:    2 LEMNKESLRKICKDLDLYSTPSINDRLYLHYKGFRRIENLEAYTELKVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXVLELPTLAVLDIQSNRIADVDVVDILAAMPNLRVLYLQGNDVVKHIKHYRKTIISRCKELRYLDDRPVFDEERRRVTAWGRVMEETNGDVDAALEAERAELALIRQEKKDKDEANFRYFE 251          
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Match: A0A8K1CJQ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJQ4_PYTOL)

HSP 1 Score: 174 bits (440), Expect = 1.310e-43
Identity = 131/260 (50.38%), Postives = 159/260 (61.15%), Query Frame = 2
Query:   35 MDLTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFLEASGSSSSALLDTLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLKYLDDRPVFDDERRRCTAWSKGM--TEGGISRAQEAEREEMAKIRESKRAAEQRQYLAFEQ 808
            +++ KA LKK+CRD  LY +PS+NDKLYLHYKG R I+NLEEYTGL+VLWLEG   XXXXXXXXXXXXXXXXXXXXXXXXXXX                                                        VL  P L  LD+Q NRINDP +++I++ M  L+VLYLQGN VVK I+ YRKT++ +C  LKYLDDRPVFD+ERRR  AW + +    G    AQEAEREEM +IR+ KR  + + +L FE+
Sbjct:    2 VEMEKAFLKKLCRDHDLYVTPSINDKLYLHYKGFRCIKNLEEYTGLKVLWLEGNGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXVLTLPKLAVLDIQSNRINDPKILEILAEMPSLKVLYLQGNDVVKHIKQYRKTMIYRCRKLKYLDDRPVFDEERRRVEAWGQALEAANGDYKAAQEAEREEMDRIRQEKRDRDHQNFLMFEE 252          
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Match: A0A482SU75_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU75_9ARCH)

HSP 1 Score: 172 bits (436), Expect = 1.700e-43
Identity = 126/234 (53.85%), Postives = 153/234 (65.38%), Query Frame = 2
Query:   38 DLTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFLEASGSSSSALLDTLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLKYLDDRPVFDDERRRCTAWSKGMTEGGIS-RAQEAE 736
            ++TK +L+K+C+++GLY++PS+NDKLYLHYKG   IQNL+ YTGL+ LWLEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                        VL  PSLQTLD+QHN+I+DP ++DIV+ + DLRVLYL GNPVVK IR+YRKTL+++C  LKYLDDRPVF+DERRR  AW+K +  GG    AQEAE
Sbjct:    3 EMTKEVLRKLCKENGLYTTPSINDKLYLHYKGFHVIQNLDSYTGLKALWLEGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXVLDLPSLQTLDLQHNKIDDPAIIDIVAQIPDLRVLYLMGNPVVKSIRNYRKTLIARCKLLKYLDDRPVFEDERRRVDAWAKVLDNGGTQDEAQEAE 227          
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Match: A0A024TEQ5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEQ5_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.300e-43
Identity = 132/260 (50.77%), Postives = 165/260 (63.46%), Query Frame = 2
Query:   35 MDLTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFLEASGSSSSALLDTLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLKYLDDRPVFDDERRRCTAWSKGM--TEGGISRAQEAEREEMAKIRESKRAAEQRQYLAFEQ 808
            M++ KA L+KIC+D  LYS+PS+ND+LYLHYKG R+I+NLEEYT ++V+WLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                         LQ PSL  LD+Q NRI DP V+DI++ M +LRVLYLQGN VVK I+ YRKT+V++C  L+YLDDRPVFDDERRR  AW K +  T G +  A +AER+E+A IR+ K+  ++  +  FE+
Sbjct:    1 MEMNKATLRKICKDLDLYSTPSINDRLYLHYKGFRRIENLEEYTNVKVIWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXLQIPSLSVLDIQSNRIADPAVLDILAQMPNLRVLYLQGNDVVKHIKQYRKTVVARCKNLRYLDDRPVFDDERRRVNAWYKALEETNGDMEAALQAERDELAVIRQEKKDKDEANFRYFEE 251          
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Match: A0A3L6V2M5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V2M5_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.010e-42
Identity = 129/258 (50.00%), Postives = 161/258 (62.40%), Query Frame = 2
Query:   41 LTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFLEASGSSSSALLDTLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLKYLDDRPVFDDERRRCTAWSKGM--TEGGISRAQEAEREEMAKIRESKRAAEQRQYLAFEQ 808
            + KA L+KIC+D  LYS+PS+ND+LYLHYKG R+I+NLEEYT ++V+WLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                            PSL  LD+Q NRI DP VVD+++ M +LRVLYLQGN VVK I+ YRKT+V++C  L+YLDDRPVFDDERRR  AW K +  T G +  A +AER+E+A IR+ K+  ++  +  FE+
Sbjct:    1 MNKATLRKICKDLDLYSTPSINDRLYLHYKGFRRIENLEEYTNVKVIWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXPSLSVLDIQSNRIADPAVVDVLAQMPNLRVLYLQGNDVVKHIKQYRKTVVARCKNLRYLDDRPVFDDERRRVNAWYKVLENTNGDMDAALQAERDELAVIRQEKKDKDEANFRYFEE 249          
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Match: A0A1V9YZD4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZD4_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.470e-41
Identity = 128/260 (49.23%), Postives = 163/260 (62.69%), Query Frame = 2
Query:   35 MDLTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFLEASGSSSSALLDTLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLKYLDDRPVFDDERRRCTAWSKGM--TEGGISRAQEAEREEMAKIRESKRAAEQRQYLAFEQ 808
            +++ K  L+KIC++  LY++P++ND+LYLHYKG R+IQNLE+YT L+VLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                         L+ PSL  LD+Q NRIND  VVD+++ M +LRVLYLQGN VVK I+ YRKT++ +C  L+YLDDRPVFD+ERRR TAW + M  T G +  A EAER E+A IR+ K+  ++  +  FE+
Sbjct:    2 LEMNKESLRKICKELDLYTTPNINDRLYLHYKGFRRIQNLEDYTELKVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXLEIPSLAVLDIQSNRINDATVVDVLAQMTNLRVLYLQGNDVVKHIKQYRKTIIYRCKELRYLDDRPVFDEERRRVTAWGRAMEETNGDLEAALEAERAELAVIRQEKKDKDEANFRYFEE 252          
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Match: A0A3B3VLG0_9TELE (Dynein axonemal assembly factor 1 n=1 Tax=Poecilia latipinna TaxID=48699 RepID=A0A3B3VLG0_9TELE)

HSP 1 Score: 159 bits (403), Expect = 6.820e-41
Identity = 84/215 (39.07%), Postives = 124/215 (57.67%), Query Frame = 2
Query:   41 LTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFLEASGSSSSALLDTLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLDVQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLKYLDDRPVFDDERRRCTA 685
            +TK  LK +C+ + LYS+P LND LYLH+KG  +I+NLEEYTGL+ LWLE                                   L+         L TLN+S N+++ +  IS L  L+TL +++N LE+A D+  + +C ++  LD+ HN ++DP++V ++ AM +LRVL L GN VV+ I +YRKT++     L +LDDRPVF  +R  C+A
Sbjct:   35 MTKKFLKDLCKKNKLYSTPCLNDTLYLHFKGFSKIENLEEYTGLKCLWLESNGLQRIEN--------------------------LDLENLEPMKKLCTLNVSNNYIQMIXXISCLPELSTLQISHNKLESAKDVEHLSECMAINVLDLSHNLLHDPEIVSVLEAMPELRVLNLMGNEVVRKIPNYRKTMIIHLKQLTFLDDRPVFPKDRPLCSA 223          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1210.1787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN44_ECTSI3.570e-23074.82Outer row dynein assembly protein n=1 Tax=Ectocarp... [more]
A0A7S3Y6C6_HETAK5.380e-5448.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3WU80_GLOUD3.270e-4450.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
T0QTZ5_SAPDV7.590e-4451.74Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A8K1CJQ4_PYTOL1.310e-4350.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A482SU75_9ARCH1.700e-4353.85Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A024TEQ5_9STRA3.300e-4350.77Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A3L6V2M5_9STRA3.010e-4250.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1V9YZD4_9STRA5.470e-4149.23Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A3B3VLG0_9TELE6.820e-4139.07Dynein axonemal assembly factor 1 n=1 Tax=Poecilia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1210contigEcto-sp13_S_contig1210:3754..8130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score664.8
Seed ortholog evalue3.3e-188
Seed eggNOG ortholog2880.D7FN44
Preferred nameODA7
Model size2156
KEGG koko:K19750
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003341,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008104,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032879,GO:0032886,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0040012,GO:0040017,GO:0043933,GO:0044085,GO:0044297,GO:0044424,GO:0044464,GO:0044782,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051272,GO:0051641,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0120031,GO:0120036,GO:1902019,GO:2000145,GO:2000147,GO:2000155
Exons9
EggNOG free text desc.dynein complex binding
EggNOG OGs2CMIN@1,2QQFE@2759
Ec32 ortholog descriptionouter row dynein assembly protein
Ec32 orthologEc-06_008340.1
Cds size1620
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1210.1787.1prot_Ecto-sp13_S_contig1210.1787.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1210 3788..7628 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462643.347659-UTR-Ecto-sp13_S_contig1210:3753..37871681462643.347659-UTR-Ecto-sp13_S_contig1210:3753..3787Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1210 3754..3787 +
1681462643.44593-UTR-Ecto-sp13_S_contig1210:7628..81301681462643.44593-UTR-Ecto-sp13_S_contig1210:7628..8130Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1210 7629..8130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462643.3609993-CDS-Ecto-sp13_S_contig1210:3787..38831681462643.3609993-CDS-Ecto-sp13_S_contig1210:3787..3883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 3788..3883 +
1681462643.3698485-CDS-Ecto-sp13_S_contig1210:4160..43581681462643.3698485-CDS-Ecto-sp13_S_contig1210:4160..4358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 4161..4358 +
1681462643.3786647-CDS-Ecto-sp13_S_contig1210:4590..47371681462643.3786647-CDS-Ecto-sp13_S_contig1210:4590..4737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 4591..4737 +
1681462643.3927608-CDS-Ecto-sp13_S_contig1210:5216..53891681462643.3927608-CDS-Ecto-sp13_S_contig1210:5216..5389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 5217..5389 +
1681462643.4016151-CDS-Ecto-sp13_S_contig1210:5604..58061681462643.4016151-CDS-Ecto-sp13_S_contig1210:5604..5806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 5605..5806 +
1681462643.4100237-CDS-Ecto-sp13_S_contig1210:5927..59961681462643.4100237-CDS-Ecto-sp13_S_contig1210:5927..5996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 5928..5996 +
1681462643.4191587-CDS-Ecto-sp13_S_contig1210:6186..64021681462643.4191587-CDS-Ecto-sp13_S_contig1210:6186..6402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 6187..6402 +
1681462643.4296417-CDS-Ecto-sp13_S_contig1210:6906..71281681462643.4296417-CDS-Ecto-sp13_S_contig1210:6906..7128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 6907..7128 +
1681462643.4372456-CDS-Ecto-sp13_S_contig1210:7331..76281681462643.4372456-CDS-Ecto-sp13_S_contig1210:7331..7628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1210 7332..7628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1210.1787.1

>prot_Ecto-sp13_S_contig1210.1787.1 ID=prot_Ecto-sp13_S_contig1210.1787.1|Name=mRNA_Ecto-sp13_S_contig1210.1787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=540bp
MDLTKALLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLW
LEGNGLSKLEGMQAQTQMKTLYAHENLIEKIEGLDSFLEASGSSSSALLD
TLNLSKNFVRRVENISHLGRLTTLLLANNHLETADDLRQVLQCPSLQTLD
VQHNRINDPDVVDIVSAMHDLRVLYLQGNPVVKCIRHYRKTLVSKCATLK
YLDDRPVFDDERRRCTAWSKGMTEGGISRAQEAEREEMAKIRESKRAAEQ
RQYLAFEQASLSLNRRYKKIHFQMMREGLEARKQAKPQSESSSKNAQASE
TSGQPEPPVVNDGIKVSISTAVQGQESPLGDTLNEHCEVSNTGSSVSGDG
IFGRQEILPLPPPPPNQMHPRGQQKSMVSNTMEERNTRVPRLVNEFSGED
IIPFSDCETVRNARKSRAARILAPSTSTHRAPSSDATDFPEGSGIRRSPG
LDRVEPLDDDVCDLKKLSNDVDEEIRAFEAESQRRREERILQNTPPPPPA
TAKEQEVVQVGCNGNVKVTSKEHVAELYQEQATNFEELD*
back to top

mRNA from alignment at Ecto-sp13_S_contig1210:3754..8130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1210.1787.1 ID=mRNA_Ecto-sp13_S_contig1210.1787.1|Name=mRNA_Ecto-sp13_S_contig1210.1787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4377bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1210:3754..8130+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGTCGTGCGTAGGTCCACGCGTGCACAGGGACATGGATCTAACCAAGG CACTGCTCAAGAAAATATGCCGAGACAGTGGGCTGTACTCATCACCATCT CTCAACGACAAGCTTTACCTGCACTACAAGGTACCTGCCAATGGGGGATA CACACGTGAATATATTTACATGTGACCCTTGTTAGGATAATCGCAACAAG TTCTTTGATAGATGTAGATGTACATGCCCGAGCGCATTGGTTAACTTCTT ATAAAAAGTACGTAAAAGCCTTGGTTTTGAACCCAGAAATTCTGATGAGA GAGCATGTGACATCTCTGGTTGTTTGGTCTCTCTTCACGAGCGCGGGTTC CGTGCTCTCGTGTTTTCGCCCTACGGTACAACGAACGTTTTCTTTTCTTT TTGACAGGGCATTCGGCAAATCCAAAACCTCGAGGAATACACAGGCTTGC GCGTTCTCTGGCTCGAGGGCAATGGCCTCTCTAAACTGGAGGGGATGCAA GCACAGACGCAAATGAAGACTCTCTACGCCCACGAAAACCTCATCGAGAA GATCGAAGGGCTAGACTCGTTCCTGGAGGCAAGTGGAAGTAGTAGCAGTG CACTTGTATTGTGTGGCATTTTGTATCGCGTGGACTTGTATCGTGTGGAC GTGTATCGTGTGGACTTTCCGTCGTACACAAAATCAATGGGGGGGGTGTC GAACACTGCGCAGTCTTTTTTAATAGTCTATCTGTGCTTGCTGCTACAGT TGCACGCTAGGGCTTCAGTCCTTCGATCTGGTTTCGCGACTTGAAGGCCA AGGCTCTCCGTTCACCACGTCTTTTTCGATGCCACAGCTCGACACGCTCA ACCTCAGCAAAAACTTCGTTAGGCGGGTGGAGAACATCAGTCACCTCGGC CGATTAACCACTCTGCTGCTGGCAAACAATCATCTCGAAACAGCGGACGA CCTGCGGCAAGTTCTACAATGTCCTAGTTTACAGGTAACGATGTGCAGGC TCCGTACACCAATCAGCTTCGCGACGATCCACCTCAGAGTCTGGTTCTGT TAATCGAAATCCAGGATAACTTGTCCCTTGCGTTGGACGACACGGGATAA TCCGTATCCGCTTTTCAGCATTCACTTTGGAAGCACAGCGTAGTACGAGA GCTACCGATGATATTGGACGCTAGACTATATGCTACTTGTAGAAGTATGT TATATTGAGACCCTGGACGTCAAGTCAATCAACAGAATCGTAGCCGACGA ATCTCGACGATTCGGTTGCACGCGAATACACTGACTGACTGTCAATACAG GTCCATCTGGGGGTAGTTGTGAGGAACTGCTATTACTCGTGAAACATTAG TTTCCTCTTTGGCGATCACGGAACACTCTCGCGTAGAACTCAGCAAGGGG AATGTGTTGTGGCTGTGACTGTTTCCATGTCGTTCCGCGCTCTTTATGCT TGTTGTCTCGTAGACCCTGGATGTGCAACACAACCGCATCAACGACCCGG ACGTGGTAGATATAGTGTCAGCTATGCATGACCTGCGGGTACTGTATCTC CAAGGCAATCCTGTCGTCAAATGCATCCGGCACTATCGGAAAACATTGGT CAGCAAATGTGCCACCCTGAAGTACCTCGACGACAGGTATGTAGCGACAA TTGATCGAAGTATGTGGTAAAACTGCGAGGGTGTTGCGCGTTTAAAGATT AGACGGGAGCTTCTAAGCAACTAAATTGATCGAACTTTCAGTGCACCCGG CATATTGGCGAAGTGCGTTGGATCTAGAGAACATGCAACATCATTCGCCC AGCTGTTAGGCAACAATGCCCTTGCGCTTATGTTCGTATTGGTTGGGGAA GGCCTGTCTTCGATGACGAGCGCCGCCGATGTACGGCGTGGTCAAAAGGC ATGACTGAAGGCGGGATATCGCGGGCACAAGAAGCGGAAAGGGAAGAAAT GGCGAAGATTAGGGAGTCCAAACGAGCTGCGGAACAGCGTCAATATCTAG CATTCGAACAGGCGAGTCTTTCGTTGAACCGACGCTACAAGAAGATCCAT TTTGTCATGAAGTATCCTTCAAAAGGGCTAGCAATGTAGGGACATTACGT GTGGCCGTCCTCCGTTGTTGCTGCTTAACAACTTTTTCTATTAAAAACGG TTGTTGCTCGCGCGGTGTACGGAGCAGATGATGCGCGAAGGGCTCGAGGC GAGGAAACAGGCTAAACCCCAAAGCGAAAGCTCAAGCAAAAATGTGAGTG CCCAATTGTCTAACTGTCCACAATGTGAACCTCAAAGGCTTCGAAATTTT TGACTCACAACATTCACAGGACGGAAGAATTGGATCTCAACGTCATGAAC TCGTCGTGGAGAGAGTATTAGTATTTGCACTCCAGAGTGATCGATACCTT GACGGGATGATTGCTTCGTGTCGAACTCCTCAGGCACAGGCGAGCGAGAC TTCAGGTCAGCCCGAGCCACCGGTAGTGAACGACGGTATTAAAGTCTCAA TTTCTACTGCGGTGCAGGGGCAAGAATCCCCTTTGGGCGATACTCTCAAC GAGCACTGCGAAGTGAGCAACACCGGATCATCTGTTAGTGGAGACGGAAT ATTCGGTCGGCAAGAGATCCTACCTCTGCCACCTCCTCCGCCTAATCAGG TGCGATTGTCACCACTTTTGCGCTCAAGGGTGGCGGTTGGCGTGGTGGCG TAATGTGGGCAATAAAGCGCTAGCTTGTCCGGCAGCCTACAGGGAGTTCT GACTTCGATTCGACATCTCTCCCCTGTGTACGCAAAACAATTACCGGAGG GACCAACAATGCAGTGCTAGGTGGGCGAATGCCGTAGACGATCATTTGAC GGCAGAACACATCGTAGCGCCCACGACCGCGACAACTCGGCGACTTGTGG TGTACAAAATGCAGCACCGCGATAAACCCAAGAACTCAAACCAGGGGCAA TCTTGCTGGTGAGTTCTATCACCTCATTGGAGATTTAAATGAACCTGCGG CTTATTTAAAAGCAGACAATAAATCCATGCGGAGTTTATATGTAGGATAT CAAGAGGATACCAGTACGCAAACAGCCCTGACGTGAGGACGTTCCAACAT CGATTGAGATATCCACTGTACGATGCTGTCGCTGTTTCCCGTCTTGCTTT CAGATGCACCCACGCGGTCAGCAAAAGAGCATGGTGTCCAACACTATGGA GGAACGCAACACGCGAGTTCCCCGTCTTGTCAACGAGTTTTCAGGCGAGG ACATCATCCCGTTCAGCGACTGTGAAACTGTGAGAAACGCTCGAAAGAGT CGTGCAGCTAGGATTCTGGCCCCATCTACCTCAACACATCGAGCACCCTC GTCGGATGCCACCGATTTCCCAGAGGTGCGCACGCGTAGTTGGGTAGTCA ACGCTGTTCCGCCCGTACTTCATGGCACACCCTTGAGACACAGCCCCATT GAGGTAATCCCGTGGGGAAGGAGGGGCACAGGATGTTTGCCAACTGAAGG CACCCCGTAAATTGGGTAGCAATGATTGTGCTCCAGTATGCATGAACTGT AATGACACATCGACTGATCCTTTCGCAGGGCTCTGGAATTCGACGATCGC CCGGCCTTGACCGCGTGGAGCCCCTGGACGACGACGTTTGCGACCTCAAG AAGCTTTCGAACGACGTGGATGAAGAAATTCGTGCATTTGAAGCAGAAAG CCAACGCCGTAGGGAAGAACGAATACTGCAGAACACCCCACCGCCACCTC CAGCCACGGCAAAAGAACAAGAGGTTGTCCAGGTTGGGTGTAACGGAAAT GTAAAAGTGACTTCTAAGGAGCATGTTGCTGAACTCTATCAGGAACAAGC GACGAATTTCGAGGAATTGGACTAAGTGCCAACTACGGGCAAACTCTATC GCTACTTGGAACGGATGCGTGAGGTACAGCTGATCGTGTAGTCTAGACTA TGCTGCGGACGCCAAGGAAAAAAGCTTTAAATAGCAGAAGATACGGTTGA TATGTCCGACACCCACTTGGTGCTAACCATTTGTAGCTGACCATGTACGG AAGCAAGTCACCAACTCACTCGTTCATTTAGAATACGCCGTGGGTTTGTT TTTGGCCTCGGCCGACAGAAAAGGGTGCTTAGATCGGCATTGATGACCCA TGATGATAGAGGGCTGGCAAGATGCGGTACAGTGATCATTAAGTGTGGCG TGCACGATTAGTTTTTGTATGGAGAGGATGTAGCTTGAGCGTGAGCAGAG GCGAGGGCAGCGGTCCGCAAACGACTCGTAGATTTATTTGAAGAGTACAG ATTGATGGCAGTTACGACCTTGAGGGTTTAGACTGGTCTAATCGTTTGTA GAAGAATCTTGAAGACCTCACCCAGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1210:3754..8130+

>mRNA_Ecto-sp13_S_contig1210.1787.1 ID=mRNA_Ecto-sp13_S_contig1210.1787.1|Name=mRNA_Ecto-sp13_S_contig1210.1787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1210:3754..8130+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCTAACCAAGGCACTGCTCAAGAAAATATGCCGAGACAGTGGGCT
GTACTCATCACCATCTCTCAACGACAAGCTTTACCTGCACTACAAGGGCA
TTCGGCAAATCCAAAACCTCGAGGAATACACAGGCTTGCGCGTTCTCTGG
CTCGAGGGCAATGGCCTCTCTAAACTGGAGGGGATGCAAGCACAGACGCA
AATGAAGACTCTCTACGCCCACGAAAACCTCATCGAGAAGATCGAAGGGC
TAGACTCGTTCCTGGAGGCAAGTGGAAGTAGTAGCAGTGCACTTCTCGAC
ACGCTCAACCTCAGCAAAAACTTCGTTAGGCGGGTGGAGAACATCAGTCA
CCTCGGCCGATTAACCACTCTGCTGCTGGCAAACAATCATCTCGAAACAG
CGGACGACCTGCGGCAAGTTCTACAATGTCCTAGTTTACAGACCCTGGAT
GTGCAACACAACCGCATCAACGACCCGGACGTGGTAGATATAGTGTCAGC
TATGCATGACCTGCGGGTACTGTATCTCCAAGGCAATCCTGTCGTCAAAT
GCATCCGGCACTATCGGAAAACATTGGTCAGCAAATGTGCCACCCTGAAG
TACCTCGACGACAGGCCTGTCTTCGATGACGAGCGCCGCCGATGTACGGC
GTGGTCAAAAGGCATGACTGAAGGCGGGATATCGCGGGCACAAGAAGCGG
AAAGGGAAGAAATGGCGAAGATTAGGGAGTCCAAACGAGCTGCGGAACAG
CGTCAATATCTAGCATTCGAACAGGCGAGTCTTTCGTTGAACCGACGCTA
CAAGAAGATCCATTTTCAGATGATGCGCGAAGGGCTCGAGGCGAGGAAAC
AGGCTAAACCCCAAAGCGAAAGCTCAAGCAAAAATGCACAGGCGAGCGAG
ACTTCAGGTCAGCCCGAGCCACCGGTAGTGAACGACGGTATTAAAGTCTC
AATTTCTACTGCGGTGCAGGGGCAAGAATCCCCTTTGGGCGATACTCTCA
ACGAGCACTGCGAAGTGAGCAACACCGGATCATCTGTTAGTGGAGACGGA
ATATTCGGTCGGCAAGAGATCCTACCTCTGCCACCTCCTCCGCCTAATCA
GATGCACCCACGCGGTCAGCAAAAGAGCATGGTGTCCAACACTATGGAGG
AACGCAACACGCGAGTTCCCCGTCTTGTCAACGAGTTTTCAGGCGAGGAC
ATCATCCCGTTCAGCGACTGTGAAACTGTGAGAAACGCTCGAAAGAGTCG
TGCAGCTAGGATTCTGGCCCCATCTACCTCAACACATCGAGCACCCTCGT
CGGATGCCACCGATTTCCCAGAGGGCTCTGGAATTCGACGATCGCCCGGC
CTTGACCGCGTGGAGCCCCTGGACGACGACGTTTGCGACCTCAAGAAGCT
TTCGAACGACGTGGATGAAGAAATTCGTGCATTTGAAGCAGAAAGCCAAC
GCCGTAGGGAAGAACGAATACTGCAGAACACCCCACCGCCACCTCCAGCC
ACGGCAAAAGAACAAGAGGTTGTCCAGGTTGGGTGTAACGGAAATGTAAA
AGTGACTTCTAAGGAGCATGTTGCTGAACTCTATCAGGAACAAGCGACGA
ATTTCGAGGAATTGGACTAA
back to top