mRNA_Ecto-sp13_S_contig121.1784.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig121.1784.1
Unique NamemRNA_Ecto-sp13_S_contig121.1784.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Match: D8LRA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRA9_ECTSI)

HSP 1 Score: 715 bits (1846), Expect = 3.450e-251
Identity = 572/650 (88.00%), Postives = 577/650 (88.77%), Query Frame = 1 
Query:    4 QRGVGRGLAATKPAWMTSGSVAPSLGGLNGRAVPASSSHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDRRNGRGRDTAGRSGGRSSANDVASRAVQQAFAGSGGGGNVPPAGRXXXRGSTIPAWMTHPDGPGGLQESSRGDRGDGSRPSKEKSPPRFARSAGPLPPEPTMANGGITGGRGGXXXXXXXXXXXXXXXXXXXXXXXRG--PEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEEDPRDNGRGGAGGGTGNDMRGVHRESPHRGAPLAGGRGRGATTPAWMNDLGLVDKLNKKSHRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKXXXRHKKSSXXXXXXXXXXXXXXX--------SSNRDGRRGFSDSGSDXXXXXXXXXXDQGRVSSNGMXXXXXXSWRDENGSMRRXXXXXXXXXXXXXXXXGRSRSRQREGGGXWXXXXXXXXXXXXXXXRHRADDWGRFDDAPSREAAGVGDGGRWKPRGDSDRSHSR 1923
            QRGVGRGLAATKPAWMTSGSVAPSLGGLNGR  PASSSHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SDDRRNG GRDTA RSGGRS+ANDVASRAVQQAFAG G   NVP AGRXXX GSTIPAWMTHP GPGGLQES RGDRGDG RPSK+KSPPRFARSAGPLPPEPTMANGGITGGR  XXXXXXXXXXXXXXXXXXXXXXX    PEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQR+RPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEEDPRDNGRGGAGGGTGN MRGVHRE PH G  LAGGRGRGAT PAWMNDLGLVDKLNKKSHRK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK    HKKS   XXXXXXXXXXXXX        S NRDGRRG+SDSGSD XXXXXXXX D+GRVSSNGM      SWRDENGSMRR    XXXXXXXXXXXX  SRSRQR  GG  XXXXXXXXXXXXXXX         FDDAP REAAGVGDGGRWKPRGDSDRSHSR
Sbjct:    2 QRGVGRGLAATKPAWMTSGSVAPSLGGLNGRGGPASSSHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHR-SDDRRNGGGRDTAARSGGRSNANDVASRAVQQAFAG-GXXXNVPAAGRXXXXGSTIPAWMTHPGGPGGLQESDRGDRGDG-RPSKDKSPPRFARSAGPLPPEPTMANGGITGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRKRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEEDPRDNGRGGAGGGTGNGMRGVHREPPHGGGALAGGRGRGATMPAWMNDLGLVDKLNKKSHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK----HKKSGHKXXXXXXXXXXXXXXXXXXXXSSGNRDGRRGYSDSGSDDXXXXXXXX-DRGRVSSNGMGGGTRGSWRDENGSMRRQSRSXXXXXXXXXXXXXXSRSRQRGEGGGXXXXXXXXXXXXXXXXXXXXXXXXXFDDAPLREAAGVGDGGRWKPRGDSDRSHSR 643
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BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Match: A0A835YH79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH79_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.850e-41
Identity = 105/282 (37.23%), Postives = 140/282 (49.65%), Query Frame = 1 
Query:  697 EKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAK------------------------------------VIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRRRPAGG------------GDRAPVQLEAVFNTTCTKCGVHG-------------------HLSIDCFSRGGKKYELVDEEDPRDNGRGGAGGGTGNDMRGVHRESPHRGAPLAGGRGRGATTPAWMNDLGLVDKLNKKSHRK 1341
            + LP ++SVH GEV   + FG F+   G+RKHGLVH SQ+A YRVEDV D   VGD V+ K                                    VI+V +GA PRE ++A+SMKLV+Q+ GKDLDP+N EA+ +A RR   GG              + P++L AVFNT C+KCG                      H+S+DCFSRGG+KYELV E+          GG     M+GV +        ++ GRG+ AT P+WM     V+    K+ +K
Sbjct:  283 DTLPALYSVHHGEVASVQDFGCFVSAPGHRKHGLVHKSQLAQYRVEDVADAVAVGDKVWVKYQXXXXXXXXXXXXXXXXXXKGGXXXXXXXXXXXXKVIDVQEGATPRESKVAMSMKLVDQSTGKDLDPTNEEAQDEAARRMGGGGXRXXXXXXXXXXAPKGPIELGAVFNTVCSKCGAXXXXXXXXXXXXXXXXXXXXXHMSVDCFSRGGQKYELVTEDLE--------GGEPAGGMKGVAKPPDVPPPSVSMGRGKAATLPSWMTSGPAVEVDVPKAEKK 556
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BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Match: UPI001ED8BBBA (nucleolar protein of 40 kDa-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8BBBA)

HSP 1 Score: 154 bits (390), Expect = 3.640e-39
Identity = 80/154 (51.95%), Postives = 105/154 (68.18%), Query Frame = 1 
Query:  712 VFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCF-SRGGKKYELVDEEDPRDN 1170
            V ++  GEV   +++GAF+++ G  K GL+H SQ++S  V+DV+DV   GD VY KVI VTDG      +IALSMKLVNQ  GKDLDP+  + + D  RR+    G R  ++LEAVFNTTC+KCG  GH++ DCF S GGK YEL+ EED  +N
Sbjct:    8 VNTIFIGEVATVQSYGAFVRIPGISKQGLIHRSQVSSAPVDDVSDVLNRGDRVYCKVISVTDG------KIALSMKLVNQGSGKDLDPNGVQLQKDELRRKTFVPGTRKKIELEAVFNTTCSKCGTRGHMARDCFKSPGGKIYELLPEEDDAEN 155
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BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Match: UPI001C0580E8 (nucleolar protein of 40 kDa n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C0580E8)

HSP 1 Score: 152 bits (385), Expect = 1.050e-38
Identity = 78/158 (49.37%), Postives = 108/158 (68.35%), Query Frame = 1 
Query:  691 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEED 1158
            G + LP +FS+ KGEVV  +T+GAF++L GY+K GLVH S+M++ RVE+ +++  VG+ V+ KVI    G + + +++ LS  MK VNQ  G+DLDP+N  AE DA+RRR      R  + LEAV NTTC+KCG  GH + DCFS  G +Y L+ EED
Sbjct:   13 GLDGLPPLFSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDVGEKVWIKVI----GREIQGEKVKLSFSMKSVNQGTGQDLDPNNVMAEQDARRRRMFKDETRNKITLEAVLNTTCSKCGCRGHFTKDCFSTPGSQYALLPEED 166
[Close]
BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Match: A0A1S3Q0U9_SALSA (nucleolar protein of 40 kDa n=11 Tax=Protacanthopterygii TaxID=41705 RepID=A0A1S3Q0U9_SALSA)

HSP 1 Score: 153 bits (386), Expect = 1.360e-38
Identity = 79/157 (50.32%), Postives = 105/157 (66.88%), Query Frame = 1 
Query:  691 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEE 1155
            G + LP ++S+ KGEV   +T+GAFIK+ GYRK GLVH S++++ RVE+V +V  VG+ V+ KVI    G + R+ ++ LS  MK VNQ  GKDLDP+N  AE D +RRR    G    + LEAV NTTC KCG  GH + DCFS  G +Y+L+ EE
Sbjct:   13 GLDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVENVAEVVDVGEQVWIKVI----GREMRDDKVKLSFSMKAVNQGTGKDLDPNNVIAEQDERRRRQFKDGTGRRITLEAVLNTTCKKCGCKGHFAKDCFSAPGLQYDLIPEE 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Match: A0A3P8WCJ4_CYNSE (Zinc finger CCHC-type containing 17 n=3 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WCJ4_CYNSE)

HSP 1 Score: 152 bits (384), Expect = 1.490e-38
Identity = 78/161 (48.45%), Postives = 107/161 (66.46%), Query Frame = 1 
Query:  691 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEEDPRD 1167
            G E LP ++S+ KGEVV  +T+GAF++L GYRK GLVH S+M++ RVE  +++  VG+ V+ KVI    G + R  ++ +S  MK VNQ  G+DLDP+N  AE DA+RRR         + LEAV NTTC+KCG  GH + DCFS  G +Y L+ EED ++
Sbjct:   14 GLEGLPPIYSILKGEVVSVQTYGAFVRLPGYRKEGLVHVSEMSASRVEKASEIVDVGEQVWIKVI----GREIRGDKVKMSFSMKAVNQGTGRDLDPNNVNAEQDARRRRQFRDQTGNKITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALLPEEDDKE 170
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BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Match: UPI0018861AB2 (nucleolar protein of 40 kDa n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI0018861AB2)

HSP 1 Score: 152 bits (384), Expect = 1.660e-38
Identity = 81/157 (51.59%), Postives = 103/157 (65.61%), Query Frame = 1 
Query:  691 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEE 1155
            G E LP +FS+ KGEVV  +T+GAF++L GY+K GLVH S+M+S RVE   +V  VG+ V+ KVI    G +   ++I LS  MK VNQ  G+DLDP+N  AE DA+RRR         + LEAV NTTCTKCG  GH + DC+S  G +Y LV EE
Sbjct:   10 GLEGLPPLFSISKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSSTRVESAAEVVDVGEKVWIKVI----GREKNGEKIKLSFSMKAVNQGTGRDLDPNNVMAEQDARRRRQFRDHTGNRITLEAVLNTTCTKCGCKGHFTKDCYSAPGLQYALVPEE 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Match: UPI001404228E (nucleolar protein of 40 kDa isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001404228E)

HSP 1 Score: 153 bits (387), Expect = 1.860e-38
Identity = 82/159 (51.57%), Postives = 104/159 (65.41%), Query Frame = 1 
Query:  697 EKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFS-RGGKKYELV--DEEDPR 1164
            E LPE++S+ +GEV     +GAF+KL G RKHGLVH S M S RVE+  +V  VG+ V+ KVI + D  D +  +IALSMK+VNQ  GKDLDPSN   E D +R+R         +QL AV +TTC+KCG  GH + DCFS  GG KY+L+  D ED R
Sbjct:    2 EALPELYSIIQGEVASVREYGAFVKLPGLRKHGLVHVSHMCSTRVENPAEVVDVGEKVWCKVISLEDKDDGKGMKIALSMKVVNQGTGKDLDPSNLGLEQDERRKRKFRDFSADRIQLGAVLSTTCSKCGCKGHFAKDCFSVPGGTKYDLIPDDVEDVR 160
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BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Match: A0A1A7YY55_9TELE (Zinc finger, CCHC domain containing 17 n=2 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A7YY55_9TELE)

HSP 1 Score: 150 bits (379), Expect = 2.170e-38
Identity = 77/157 (49.04%), Postives = 106/157 (67.52%), Query Frame = 1 
Query:  691 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEE 1155
            G + LP ++S+ KGEVV  +T+GAF++L GYRK GLVH S+M++ RVE  +++  VG+ V+ KVI    G + + +++ LS  MK VNQ  G+DLDP+N +AE DA+RRR         + LEAV NTTC+KCG  GH + DCFS  G +Y LV EE
Sbjct:   13 GLDGLPPMYSIAKGEVVSVQTYGAFVRLPGYRKEGLVHVSEMSATRVESASEIVDVGEQVWIKVI----GREIQGEKVKLSFSMKAVNQGTGRDLDPNNVQAEQDARRRRQFRDQGSNRITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALVPEE 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Match: A0A6G0HS78_LARCR (Nucleolar protein of 40 kDa n=4 Tax=Eupercaria TaxID=1489922 RepID=A0A6G0HS78_LARCR)

HSP 1 Score: 151 bits (381), Expect = 4.750e-38
Identity = 78/158 (49.37%), Postives = 106/158 (67.09%), Query Frame = 1 
Query:  691 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEED 1158
            G E LP +FS+ KGEVV  +T+GAF++L GY+K GLVH S+M++ RVE+ +++  VG+ V+ KVI    G + R  ++ LS  MK VNQ  G+DLDP+N  AE D++RRR         + LEAV NTTC+KCG  GH + DCFS  G +Y L+ EED
Sbjct:   11 GLEGLPPIFSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDVGEQVWIKVI----GREIRGDKVKLSFSMKAVNQGTGRDLDPNNVMAEQDSRRRRQFRDHTGNRITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALLPEED 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig121.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRA9_ECTSI3.450e-25188.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YH79_9STRA1.850e-4137.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001ED8BBBA3.640e-3951.95nucleolar protein of 40 kDa-like n=1 Tax=Ischnura ... [more]
UPI001C0580E81.050e-3849.37nucleolar protein of 40 kDa n=1 Tax=Melanotaenia b... [more]
A0A1S3Q0U9_SALSA1.360e-3850.32nucleolar protein of 40 kDa n=11 Tax=Protacanthopt... [more]
A0A3P8WCJ4_CYNSE1.490e-3848.45Zinc finger CCHC-type containing 17 n=3 Tax=Cynogl... [more]
UPI0018861AB21.660e-3851.59nucleolar protein of 40 kDa n=1 Tax=Syngnathus acu... [more]
UPI001404228E1.860e-3851.57nucleolar protein of 40 kDa isoform X1 n=2 Tax=Pet... [more]
A0A1A7YY55_9TELE2.170e-3849.04Zinc finger, CCHC domain containing 17 n=2 Tax=Not... [more]
A0A6G0HS78_LARCR4.750e-3849.37Nucleolar protein of 40 kDa n=4 Tax=Eupercaria Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig121contigEcto-sp13_S_contig121:12826..19962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score724.2
Seed ortholog evalue5.5e-206
Seed eggNOG ortholog2880.D8LRA9
Model size1926
KEGG koko:K02357
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
Ec32 ortholog descriptionRNA-binding domain, S1
Ec32 orthologEc-06_003210.1
Cds size1926
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig121.1784.1prot_Ecto-sp13_S_contig121.1784.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig121 12826..19962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462642.9692237-CDS-Ecto-sp13_S_contig121:12825..134101681462642.9692237-CDS-Ecto-sp13_S_contig121:12825..13410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 12826..13410 -
1681462642.9797685-CDS-Ecto-sp13_S_contig121:13671..137851681462642.9797685-CDS-Ecto-sp13_S_contig121:13671..13785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 13672..13785 -
1681462642.989619-CDS-Ecto-sp13_S_contig121:14153..143001681462642.989619-CDS-Ecto-sp13_S_contig121:14153..14300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 14154..14300 -
1681462642.9979358-CDS-Ecto-sp13_S_contig121:15128..152091681462642.9979358-CDS-Ecto-sp13_S_contig121:15128..15209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 15129..15209 -
1681462643.006432-CDS-Ecto-sp13_S_contig121:15701..158211681462643.006432-CDS-Ecto-sp13_S_contig121:15701..15821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 15702..15821 -
1681462643.0194168-CDS-Ecto-sp13_S_contig121:16444..165071681462643.0194168-CDS-Ecto-sp13_S_contig121:16444..16507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 16445..16507 -
1681462643.0336018-CDS-Ecto-sp13_S_contig121:16802..168741681462643.0336018-CDS-Ecto-sp13_S_contig121:16802..16874Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 16803..16874 -
1681462643.0487504-CDS-Ecto-sp13_S_contig121:17364..175961681462643.0487504-CDS-Ecto-sp13_S_contig121:17364..17596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 17365..17596 -
1681462643.0590053-CDS-Ecto-sp13_S_contig121:17903..180621681462643.0590053-CDS-Ecto-sp13_S_contig121:17903..18062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 17904..18062 -
1681462643.0697627-CDS-Ecto-sp13_S_contig121:18621..186931681462643.0697627-CDS-Ecto-sp13_S_contig121:18621..18693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 18622..18693 -
1681462643.0789373-CDS-Ecto-sp13_S_contig121:19342..194951681462643.0789373-CDS-Ecto-sp13_S_contig121:19342..19495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 19343..19495 -
1681462643.094572-CDS-Ecto-sp13_S_contig121:19834..199621681462643.094572-CDS-Ecto-sp13_S_contig121:19834..19962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig121 19835..19962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig121.1784.1

>prot_Ecto-sp13_S_contig121.1784.1 ID=prot_Ecto-sp13_S_contig121.1784.1|Name=mRNA_Ecto-sp13_S_contig121.1784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=642bp
QQRGVGRGLAATKPAWMTSGSVAPSLGGLNGRAVPASSSHGNGRQQQQSR
SRSRSRSRIGRRNGGGGGRERSQRRSDSRNQRSRSRSRHRSDDRRNGRGR
DTAGRSGGRSSANDVASRAVQQAFAGSGGGGNVPPAGRGRGRGSTIPAWM
THPDGPGGLQESSRGDRGDGSRPSKEKSPPRFARSAGPLPPEPTMANGGI
TGGRGGGGRGWNRSGGGHYGSGGGGRGGGRGPEKLPEVFSVHKGEVVKTE
TFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDG
ADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQL
EAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEEDPRDNGRGGAGGGTG
NDMRGVHRESPHRGAPLAGGRGRGATTPAWMNDLGLVDKLNKKSHRKEKK
PKKKKSDHRRGDSDSDSSDDDGDDHRKKHKKHHRHKKSSHKHKKSGHKHK
KSKHSSNRDGRRGFSDSGSDDSGGGGGGGGDQGRVSSNGMGGGTGGSWRD
ENGSMRRRSRSSGNNGRGGGGRRGRSRSRQREGGGGWGGRRGRSDSRRGG
GGRHRADDWGRFDDAPSREAAGVGDGGRWKPRGDSDRSHSR*
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mRNA from alignment at Ecto-sp13_S_contig121:12826..19962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig121.1784.1 ID=mRNA_Ecto-sp13_S_contig121.1784.1|Name=mRNA_Ecto-sp13_S_contig121.1784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig121:12826..19962- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAGAGAGGGGTCGGTAGAGGACTCGCCGCCACAAAGCCTGCCTGGAT
GACCAGTGGGTCTGTTGCGCCATCATTGGGAGGGCTCAATGGGCGAGCAG
TCCCGGCGAGTAGCAGCCATGGCAATGGGTGAGACGTAAGCAGAAGCCTC
GGCAAGCAGCAGCAGAGGTGCTCTGTCTGCTGCTGTGTGGCAAACACACC
TTTTTCTTGGAGCACAGCAGCAGCAGCTATATGCCCGTCCTTTGCAGGAC
AGGAAGAAGCTTAGTTTCAGAGACGCCTAGTAACGAAGTACCGCCCTGGT
GAAGCAACTGACAGCAGCCGAGTATCTGGATGGTTGCTCGCACGGAAATA
ACATGAAACGACGTGGTTTCTGTTTATCCCCTGCGCTACGATAGCAGCAG
TACTGCGCACCAGTCTCCACGGTAAATTGATCTCTGTTGCCCACGAACAA
CGCAACAACAACCGCAGTCGACAGCAGCAGCAGTCAAGAAGCAGGAGCAG
GAGCAGGAGCAGGATCGGGCGGCGGAATGGAGGCGGCGGGGGCCGCGAGC
GGTCACAACGCCGCTCCGACTCACGCAACCAGAGGTCTAGGTCTAGATCG
AGGCATAGGTCGGACGATAGGTGGGTTGGGGTTTGATCGGCCGAAGTGCA
CTTGAAGATGTTTGTCTTAACTTCGCGGGTGGTAGGCACGAACGAAAACT
TCTTGCTACGTGAGGTATTGGACATGAGGAAAGAGACGTGCCGTCGTATT
ATTTTTGTTGTTTCGAATCAAGTGCAGCAGCGACCAGGGTGTGTGGTGAA
GACAGGCGACGTGAGAAGGTTGATTCTCTCCGGAACGCAACGCGTTGTCG
CACGCCAAGAGGAATCAAAAAGACTTCCATGGGTGAGGCTTTGCCACGCG
CATCCGAACCGGTCCATCCTTCTTGCCCAAAAGAGCAAGCTGCTTGTCCA
CATATCGAGGGCATTCGCACGCATAGCACGTGCTTCTAACCCCTGCTCAT
GCCCGATATATTGGAGCACGAGATGAAGGTGAAATAGTACTACGAGGACT
TCTGCACGACCTAGAGTTATAATACGCAGTCGCGGATCGCTAATTGTACG
ACTGCTGTGGGCCTTCTTCCCGCCGATGAGAGGCGCGTCGCGACGCATAC
CTCCTTGGAAAACCCTACACCCCCTCTCTTATCTGGCTCCTATCCCCCCC
CCGCACATCTCTCTCCGATCTCTGGGTCTCTCTTTCTCCCGCTTCGTTTG
CCTGGTGTGCTGCTTCCAGGCGGAACGGGCGTGGCAGGGACACCGCCGGG
AGGAGCGGAGGCCGGAGCAGCGCCAACGATGTAGCGAGCAGGTACCGTTG
CGTGATGCCACGCTCTGGTCATCGTATGGGTTTTGGCGTTCGCGGTCGGT
TTTGAGCCTGTCTTGCCCTCGCCCTTGAGTCGCGAATAGCCTAAAGTACA
GCGATGATGCCGAGCCGAGGAACACACGAGCACCACGGGAAAGTCTCTGT
TGTTTAACTAGCCCTGTATTTCTCTCTCCCGCGCTTCCTTCACCTCCGTC
TGTCTGTCTATGGGTATGCCGATGCCGATCTCTCCTTTTTGCCTAAAAGG
TCCAACCTCGTCATTTTGGCATCGGCGCTCACCCGGGGGGAACAGGCCAA
AGCTCACAATCTGCCCGTTATGCCTCCTATTGACAGCACGCTGTTTTTCA
TTCAAGTGACCCTTGTCCGAATAAGACACAAGCCCCGTGTCGTCCATCCC
GCCATTATCTGGTCATGGTTGGCTTGACATCCTTCAGGGATACTGGGAAC
CCCCGCTCCTTCACCGTGTCGAGGTGCACTGGCATGGCAGCTCCTCTTTC
TCACTCCCGCGCTTGTTTTCCTGTCTTGGGCCAAACCGGCCGCCTCTCAG
GGCGGTGCAGCAAGCCTTCGCGGGCAGCGGCGGCGGCGGCAATGTCCCGC
CGGCGGGGCGGGGACGGGGGCGTGGATCAACCATTCCGGCTTGGATGACG
CACCCGGACGGGCCGGGGGGGTTGCAGGAGAGCAGCAGGGGGGACCGCGG
AGATGGCAGGTCTGATACGAACGTGCCAGAGGAGGGGGTGGCGTAGTACC
ACTCGGTTGATGCTGCTATTATTTTGCTTGACAAATAGCGGAGGCGAAGG
GGGGAGGACACTGTTGCTGCGCTGGAAACAACTTCTGCATGTCGATGCGC
TCAAATTAACACCACCGGGCAACGGCGATTACCTCGGCGGTGCAATAGCG
ACAGCGTATCTATGCAAGTACGGCTTGCTAGGATTTCCAGTATGTCTCTC
TTTTTGTCGCCCCGTTTCAAGCAAATCGATCACGCACTCTCTCACCTTTC
CCCCCAAACACGCGAGCAGGCCTTCGAAGGAGAAGAGCCCCCCAAGGTTT
GCGAGAAGCGCAGGCCCGTTGCCTCCGGAGCCGACCATGGCCAACGGGGG
GATCACGGGGGGGCGGGGCGGAGGCGGTCGGGGGTGGAACAGGAGCGGCG
GGGGGCACTACGGCAGCGGGGGCGGCGGCAGAGGGGGCGGCAGAGGGCCG
GAGAAGCTTCCCGAAGTATTCTCGGTCCACAAGGGGGAGGTCGTCAAGGT
GCGAAGACGGGGCTTTTTGGACTTTGGGGGAGGGCTCTGGTGGACTCCTT
TGCACGCGGTAGCGGTAGCGACAGCTTGCAAATTGGACCATAGCAGAAAT
TCTACTGCTGTTTTTTTCGCTCCTGTGAAAGTGCGGGATGACTTTGTTGT
GTGGGGTGTGTTCCTGCGTGCGAGAATGATGTTTGACTCCGCTTCGTGCA
CACACACACACGTTCGGTTCATTCGCATGGACATTGATTTGCATAACAGT
CCACAGACTATCCGCATGTGGCGCCAGTCCGCAAGCGTAACAGCTGACCA
AGGCGTACGACGCGATGATAGATAGGTGTGTAGCACGACGGCATGAGTGG
ATTGTCTGCCAATGCTTCCGCCGCTTGTTTCCTCCGGTGTCTCACCCCCT
CCCCCTTCGCCCGTCACTACACCCCTCGCTTTTTTGGGCACACTGCTTCC
GCCATTTTCGGTTGTTTTTGCCCCACATGGCGATACAGACGGAGACATTC
GGAGCGTTCATCAAACTCGACGGCTACCGCAAGCATGGGCTGGTGCACTG
CAGCCAGATGGTAGGCCTTTGTTCTTGAATCTACAGGCAGACGAACTTCA
TGTTCGTGCGGTAGCATCCTCGCAAGTGTGCAGGGTAGATGATATTTTTT
CAAGTGGAAGCGACGTCGAACATGCTGTGGAACGCCCTTCGTTTTTGGTG
ATGACCCCATCTGCAGATCGTTCTTTGTTTTGGCCGACGAGAGAGTAAAG
TGGGACCTTTTCTCTCCAATGTTGCCGGCAAGAGCAAGGTATTCGTGCTG
ATCGCACACACACCCTGCCTCTTCGGCGTTACTTTCCTAAACAATGTGAC
TGCAGGCTTCGTACAGAGTGGAAGATGTTACGGACGTCTGCAAAGTGGGC
GACACTGTGTACGCGAAGGTGCGATTGCTTCCTCCCAAAGGGTGTTCTCC
AAGCTTATCCCGGCTGTTTCGCTTCTCTCTCCGTTTGATTGGATCGGTTG
CCTGATACGGGTTTTGCAGTGTTGGGGGAAGTCACGGCCGATTGTTGGCT
TGTGTGAGGTTCGGCTGTGATGTTGGAACGGCAAGTGTTCACCCGATTCA
GAGGGATAGGATTAAGTCGTGATGCTTGGGGCCGTTGGCAACACAGCGAT
AAATAGCAGCGGGAATGGACCAAGACCTCTCGACGCCACTTTGTACTTGT
GCAAGTGTACGCCAGAGATACTCCCTGCCTTTTTTGTTGTCGCGGCAAAG
CCAGTCGCGGTGTTTCGCCGCAACCTCTAAGAAACTGTCACGAAGGCTTC
CTTTTGCGGTGGCAATGGCAAGCCAATCACGCTATTGCGCCGCACATGAG
TGCACTACCTTCGCGAAGGACGAGGCTTGTGCCAACCCAATCTTTCACCC
AGGATGGCCGGCAGCGTTTGTTACTACCGCATCGGGGTGGTACAGCAGTG
TGATGCCACATCTGTTTGGAAAACCGAACCTTGCCAAGAGTAACACTGCT
TCGTGTAACATCATATGCATACGGCCAAAACCGAACGACAGGTGATCGAG
GTGACGGACGGGGCCGATCCCCGAGAACAGCGCATCGCGCTCTCCATGAA
GCTGGTCAACCAGGCCGACGGCAAGGATCTCGACCCTTCCAACGCCGAGG
CTGAGACGGACGTGAGCACTTTTGGTTCGCACTGCTACTGATGTAGAGCA
GTCCCATGTCTCGTCCCGGCCAGAGTGTTTTTTGTTTTTTGCCGACGGGT
TCACGTAGATCGTATCGTCGACCTTCCCGAGCAACGAGCCGCCGGCTGTA
GCTGTAGGCCGCCCTCCCGGATGGGCTCAGCGGAAGGAGTGTGCACGTGC
GCCAGGCCTTACTGGTTGTTGTCGTGCGAGTGCGTTCATGTCTTTGTTGG
AATTTTCCCAACAGGTAGTCTCAACCTCGACCACGCTGCCCTATTCAGAC
TGCTGTCACGATTTTCGGGGTAGGTTCTGGGTCTTTTATACTGCTCACGT
CTACAGTACACGCGCGTGAGCAAAAAAAATAGCAATTTGGGTGGCTGCCC
GCACTGCTGCCGCTCCTGCTGGAGAAATTCACATGCTATTAAAGCCACCG
CCTCCGCTGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTATTATTTTT
CAGGCGCAGCGCAGGAGACCCGCGGGTGGGGGCGATCGGGCCCCGGTGCA
GCTGGAAGCGGTCTTCAACACCACGTGCACAAAGGTGGGTTCGCTCGCAT
TATGAACGCACACGCGCTGAACGCTGGCGCGTTGAAACCGCAGATATGTG
CTACAGAAAACGGAGTTGCTTGGATCCCCTCCAAGAGTTTGGACAGGCTA
ATTTGCGCAAATAAAGCAGCTGCGGTTGTTCTTACGAATCTACGTTGGAG
AGAGCGATGCATGTCCAATTGTCATCTCGCGTTCCCATCCGCACAATCAA
GTCGCACTAGGACATAAACAGTACGTTGACCTTCACGTTTCCAATCGTGT
TATTCATGGAGACGAAAAATGTTGTGGTGGATAGCAGAACTCTGCAAGGC
GGGGGAATGACCACAATTGTGCGGCGAAACTGCTGACGTGTCGGCACTGA
AGTACCAACCTCCCTCATCACCTTGCTCTTGCCACGAGCGGACAGGGTTG
GGGTCTACCCTGTAGATGTGGCGCAGCGCTATCATGGACATTCATAGCCA
ACCCCCCTCCTCCTCCTTTTCCCCTCCTACTCCGTATCCCCTGGTGTCCA
CACGAGTGACTCTCTCGAAGACCCTGCATGCGCCCCCGCTACAGAAAAAA
CGTGTCCAACTAAAAATTTTCTTTGAAACGGGTGACGCGCTCTATTCCTC
TCCAACCATCTTGCCTGTTTCTTGTTCCGTCTGTTCCGTCTGTTCTATAT
TTTTCTTCTCGATCGCTCTCTAATCATCTGTGTGTGGGGAATCTAGCGGC
GTTTTTGTAGGCCGGTCGGTCGGTTTCGTTCTTTTTGACGCGGATTGTTT
CTTTTTTCTTTTTCTTTGTTGTTCTGTTGTTTGCTTCTCTCTTTCTGTTC
GGCTGGTGGCAGTGCGGAGTCCACGGGCACTTATCAATCGATTGCTTCTC
CAGGGGAGGCAAGAAGTACGAACTTGTGGACGAAGAAGACCCCAGAGACA
ACGGTCGAGGAGGAGCTGGAGGGGGAACTGGCAATGACATGCGGGGGGTA
CACCGTGAGGCGAGTTTGGGGCGTTTGGATGCTGTTCGGGTTCTGCATCC
CTCGAGCTAGCGACCAGGAACGCGGGAGCTCGAGATCATAGGAATATAGC
CTCAACGCACACAAGCAACCTGGGTTTGGATGATGAGAGGGGGCTATTAT
AGCTCGCGATAGCCATGGTTGAAAAGTGTTGGTCCCCCCCCCGCAAACAC
ACCATGATTATGTCTTCCTTCATTGGTCTTTGCCCCCCCCCCCTAGATTG
AAGGGATCCCACCAACCTTCATCCACCCTCGCCCTCCACTATGTACACAC
ATTGTACCTCCCGTGTTTGCACTAATTTAGTTCTTGTCTTTCGCGTGCCA
CGCAAACTTGTATATTTGTCTCAACAGTCCCCCCATCGAGGCGCTCCGCT
GGCAGGTGGGAGGGGACGTGGGGCTACCACGCCCGCGTGGATGAACGACC
TCGGTCTGGTGGACAAGCTCAACAAGAAGAGCCATCGCAAGGTAAACCTT
TCCTTCCTTTCTTTGCCCTGCATCAGGTTGTGGTTTGATTTCCCGCTGTG
TTTGCTCTTGCTGTTGCTCGGTAAAGAACACCAGCCGTCTGACCTTGCGG
TTGCACGGTAAAGAACACCAGCCGTCTCACCAGAGCGCCTGTCACCAGAC
TTGAGACAAGCCTAGAACGAAAAAAAGTTGGCAGCCTCAAGCTGTTGACT
CATGCGCGCCCCTCTCTCTCCTCAACCAACGTGCGTGCGCGCGGGCGCAC
AGGAAAAGAAGCCGAAGAAGAAGAAGAGCGACCACCGCCGTGGCGACAGC
GATTCCGACAGCAGCGACGACGACGGCGACGACCACAGGAAGAAGCACAA
GAAGCACCATCGGCACAAGAAGTCTAGCCACAAGCACAAGAAGAGCGGCC
ACAAGCACAAGAAGTCCAAGCACTCGAGCAACAGGGACGGTCGCCGCGGC
TTCTCGGACAGCGGCAGCGATGATAGTGGCGGCGGCGGCGGCGGCGGCGG
TGATCAGGGTCGGGTGTCCTCGAACGGAATGGGCGGGGGGACGGGCGGGA
GCTGGCGTGACGAAAACGGAAGCATGCGAAGGCGAAGCAGGAGCAGCGGC
AACAACGGTCGCGGTGGCGGGGGGAGGAGAGGGCGGAGCCGCAGCAGACA
GAGAGAGGGAGGCGGCGGGTGGGGTGGAAGGAGAGGACGTAGCGACAGCA
GACGCGGAGGAGGCGGGCGTCACAGGGCGGACGATTGGGGACGTTTCGAC
GATGCCCCTTCTAGGGAGGCAGCCGGGGTAGGAGATGGAGGCCGCTGGAA
ACCGCGAGGGGATTCGGACCGTAGCCACTCGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig121:12826..19962-

>mRNA_Ecto-sp13_S_contig121.1784.1 ID=mRNA_Ecto-sp13_S_contig121.1784.1|Name=mRNA_Ecto-sp13_S_contig121.1784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1926bp|location=Sequence derived from alignment at Ecto-sp13_S_contig121:12826..19962- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAGAGAGGGGTCGGTAGAGGACTCGCCGCCACAAAGCCTGCCTGGAT
GACCAGTGGGTCTGTTGCGCCATCATTGGGAGGGCTCAATGGGCGAGCAG
TCCCGGCGAGTAGCAGCCATGGCAATGGTCGACAGCAGCAGCAGTCAAGA
AGCAGGAGCAGGAGCAGGAGCAGGATCGGGCGGCGGAATGGAGGCGGCGG
GGGCCGCGAGCGGTCACAACGCCGCTCCGACTCACGCAACCAGAGGTCTA
GGTCTAGATCGAGGCATAGGTCGGACGATAGGCGGAACGGGCGTGGCAGG
GACACCGCCGGGAGGAGCGGAGGCCGGAGCAGCGCCAACGATGTAGCGAG
CAGGGCGGTGCAGCAAGCCTTCGCGGGCAGCGGCGGCGGCGGCAATGTCC
CGCCGGCGGGGCGGGGACGGGGGCGTGGATCAACCATTCCGGCTTGGATG
ACGCACCCGGACGGGCCGGGGGGGTTGCAGGAGAGCAGCAGGGGGGACCG
CGGAGATGGCAGCAGGCCTTCGAAGGAGAAGAGCCCCCCAAGGTTTGCGA
GAAGCGCAGGCCCGTTGCCTCCGGAGCCGACCATGGCCAACGGGGGGATC
ACGGGGGGGCGGGGCGGAGGCGGTCGGGGGTGGAACAGGAGCGGCGGGGG
GCACTACGGCAGCGGGGGCGGCGGCAGAGGGGGCGGCAGAGGGCCGGAGA
AGCTTCCCGAAGTATTCTCGGTCCACAAGGGGGAGGTCGTCAAGACGGAG
ACATTCGGAGCGTTCATCAAACTCGACGGCTACCGCAAGCATGGGCTGGT
GCACTGCAGCCAGATGGCTTCGTACAGAGTGGAAGATGTTACGGACGTCT
GCAAAGTGGGCGACACTGTGTACGCGAAGGTGATCGAGGTGACGGACGGG
GCCGATCCCCGAGAACAGCGCATCGCGCTCTCCATGAAGCTGGTCAACCA
GGCCGACGGCAAGGATCTCGACCCTTCCAACGCCGAGGCTGAGACGGACG
CGCAGCGCAGGAGACCCGCGGGTGGGGGCGATCGGGCCCCGGTGCAGCTG
GAAGCGGTCTTCAACACCACGTGCACAAAGTGCGGAGTCCACGGGCACTT
ATCAATCGATTGCTTCTCCAGGGGAGGCAAGAAGTACGAACTTGTGGACG
AAGAAGACCCCAGAGACAACGGTCGAGGAGGAGCTGGAGGGGGAACTGGC
AATGACATGCGGGGGGTACACCGTGAGTCCCCCCATCGAGGCGCTCCGCT
GGCAGGTGGGAGGGGACGTGGGGCTACCACGCCCGCGTGGATGAACGACC
TCGGTCTGGTGGACAAGCTCAACAAGAAGAGCCATCGCAAGGAAAAGAAG
CCGAAGAAGAAGAAGAGCGACCACCGCCGTGGCGACAGCGATTCCGACAG
CAGCGACGACGACGGCGACGACCACAGGAAGAAGCACAAGAAGCACCATC
GGCACAAGAAGTCTAGCCACAAGCACAAGAAGAGCGGCCACAAGCACAAG
AAGTCCAAGCACTCGAGCAACAGGGACGGTCGCCGCGGCTTCTCGGACAG
CGGCAGCGATGATAGTGGCGGCGGCGGCGGCGGCGGCGGTGATCAGGGTC
GGGTGTCCTCGAACGGAATGGGCGGGGGGACGGGCGGGAGCTGGCGTGAC
GAAAACGGAAGCATGCGAAGGCGAAGCAGGAGCAGCGGCAACAACGGTCG
CGGTGGCGGGGGGAGGAGAGGGCGGAGCCGCAGCAGACAGAGAGAGGGAG
GCGGCGGGTGGGGTGGAAGGAGAGGACGTAGCGACAGCAGACGCGGAGGA
GGCGGGCGTCACAGGGCGGACGATTGGGGACGTTTCGACGATGCCCCTTC
TAGGGAGGCAGCCGGGGTAGGAGATGGAGGCCGCTGGAAACCGCGAGGGG
ATTCGGACCGTAGCCACTCGCGGTGA
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