mRNA_Ecto-sp13_S_contig12091.1775.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A6H5KMI8_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI8_9PHAE) HSP 1 Score: 861 bits (2224), Expect = 1.150e-303 Identity = 456/487 (93.63%), Postives = 466/487 (95.69%), Query Frame = 1
Query: 1 AIERSRRTHFRALAALEGRSSQVSPEAVSLTWTGPSAVRRDFTPAAAA--VSVWSNSASPVATPNINTTTENGRPASLSSKADTPRAGSRSFPSRRRQGGDPLALLPVDPGVVTPADAVAVDETGPMSMKNLRELERSLGMNEPKVLEALDAERELANEMRVGISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKITGSVKLRVQWVFSVEALLLSQIRGLELFLGTVEARLQRTRLLIERLNKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSDGKDGTGSAHGDHRKTPPFKSPLRGGGATVPTLGGQLARANSLTPASPTAHGDGSRIVARLSSPSGGGGGPGLSINAQGLRVGGGDANGGGQ 1455
AIERSRRT+FRALAALEGRSSQ+SPEAVSLTWTGPSAVRRDFTPAAAA VSVWSNS SP+ATPN TTTENGRPASLSSKADTPRAGSRSFPSRRRQGGDPLALLPVD GVVTPADAVA D+TGPMSMKNLRELER LGMNEPKVLE LDAER LANEMRVGISETHQVFVEVLAA SLRPTGLQGYSDPYCVCYLK+PDSTGGSKSADDRFRGQ GETYFCEKTL+PKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKITGSVKLRVQWVFS+EALLLS+IR LELFLGTVEARLQRTRLLIERLNKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSD KDGTGSAHGDHRKTPPFKSPLRGGGAT+P GGQLA ANSLTPASPTAHG GSRIVA LSSPS GGGGPG SINA+GLRVGGGDANGGGQ
Sbjct: 299 AIERSRRTYFRALAALEGRSSQLSPEAVSLTWTGPSAVRRDFTPAAAAAAVSVWSNSGSPMATPNNKTTTENGRPASLSSKADTPRAGSRSFPSRRRQGGDPLALLPVDSGVVTPADAVAADDTGPMSMKNLRELERRLGMNEPKVLEVLDAERVLANEMRVGISETHQVFVEVLAAASLRPTGLQGYSDPYCVCYLKVPDSTGGSKSADDRFRGQGGETYFCEKTLNPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKITGSVKLRVQWVFSLEALLLSRIRDLELFLGTVEARLQRTRLLIERLNKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSDSKDGTGSAHGDHRKTPPFKSPLRGGGATIPMPGGQLACANSLTPASPTAHGYGSRIVAPLSSPSSGGGGPGSSINAEGLRVGGGDANGGGQ 785
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI) HSP 1 Score: 852 bits (2202), Expect = 2.320e-278 Identity = 449/485 (92.58%), Postives = 461/485 (95.05%), Query Frame = 1
Query: 1 AIERSRRTHFRALAALEGRSSQVSPEAVSLTWTGPSAVRRDFTPAAAAVSVWSNSASPVATPNINTTTENGRPASLSSKADTPRAGSRSFPSRRRQGGDPLALLPVDPGVVTPADAVAVDETGPMSMKNLRELERSLGMNEPKVLEALDAERELANEMRVGISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKITGSVKLRVQWVFSVEALLLSQIRGLELFLGTVEARLQRTRLLIERLNKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSDGKDGTGSAHGDHRKTPPFKSPLRGGGATVPTLGGQLARANSLTPASPTAHGDGSRIVARLSSPSGGGGGPGLSINAQGLRVGGGDANGGGQ 1455
AIERSRRTHFRALAALEGRSSQ+SPEAVSLTWTGPSA+RRDFTPAAAAVS WSNSASPVATPN NTTTENGRPASLSSKADTPRAGSRS PSRRRQGGDPLAL PV PGVVTPADAVAVDET PMSMK LRELERSLGM+EPKVL+ LDAER LANEMRVGI+ETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTL+P WSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKI GSVKLRVQWVFS++ALL +QIRGLELFLGTVEARLQR RLLIERL KEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSD KDGTGSAHGDHRKTPPFKSPLRGGGAT+ T GGQL RANSLT ASP+AHG GSRIVARLSSPS GGGGPG SINA+GLR GGGD NGGGQ
Sbjct: 5879 AIERSRRTHFRALAALEGRSSQLSPEAVSLTWTGPSALRRDFTPAAAAVSAWSNSASPVATPNNNTTTENGRPASLSSKADTPRAGSRSLPSRRRQGGDPLALSPVGPGVVTPADAVAVDETEPMSMKQLRELERSLGMDEPKVLQVLDAERVLANEMRVGITETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLNPTWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKIAGSVKLRVQWVFSLDALLHTQIRGLELFLGTVEARLQRIRLLIERLKKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSDSKDGTGSAHGDHRKTPPFKSPLRGGGATITTPGGQLVRANSLTLASPSAHGYGSRIVARLSSPSSGGGGPGFSINAEGLRAGGGDTNGGGQ 6363
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A836CLN4_9STRA (C2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN4_9STRA) HSP 1 Score: 178 bits (451), Expect = 2.000e-50 Identity = 91/159 (57.23%), Postives = 114/159 (71.70%), Query Frame = 1
Query: 499 QVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKI--TGSVKLRVQWVFSVEALL 969
QV VEVLAA LR T LQGY++PYC+ YLK + + R + RG TYFCEKT+ PKW QR +F VP AA + +RG+ +RV++LSR+ +RPND LGQA VPL LL D+REHVGWFPLN+R+SRLM L+ DK GSV+LR+QWV + ALL
Sbjct: 1 QVLVEVLAARGLRGTDLQGYANPYCIIYLK-------ATARRRRRQRPRGATYFCEKTVCPKWVDQRLVFTVPAAAARSQRGYSLRVMILSRDFLRPNDLLGQAAVPLDLLLDQREHVGWFPLNQRASRLMALSQMDKPGGCGSVQLRLQWVHTKTALL 152
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A7S4MN01_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MN01_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.100e-25 Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 1
Query: 484 ISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQR--FIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHL--AAGDKITGSVKLRVQWVFSVEALL 969
IS HQV VEV+ A L+ + G S+PY LK + G + +R TY+ E+TLSPKWS Q F+F VPP A + RGH ++V + S ++ + LG +V L L+++RE VGW+PL RSS L + ++ GSV+LRVQW++SV ALL
Sbjct: 1810 ISSCHQVLVEVIEAAELKAGNVNGLSNPYAEVSLKSRSNRKGKNLFAKKELNRR--TYYIEQTLSPKWSHQPQIFVFNVPPEAAEMTRGHTIKVKLRSFGVLGSHTHLGTTEVHLRSLKNQRELVGWYPLMSRSSGRSELTQSLSSRVRGSVRLRVQWIYSVPALL 1973
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A7S2UEQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEQ3_9STRA) HSP 1 Score: 119 bits (299), Expect = 6.210e-25 Identity = 66/164 (40.24%), Postives = 97/164 (59.15%), Query Frame = 1
Query: 481 GISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRL-MHLAAGDKITGSVKLRVQWVFSVEALL 969
IS+ +QV +EVL L+ L G S+PYC LK G ++ + + + +TY+ EKTLSPKW Q F+F+VP A RGH ++V + + L+ LGQA+V L L+++RE V W+PL R+ + ++ + GSVKLRVQW++SV ALL
Sbjct: 113 SISQCNQVVIEVLECAGLKAVYLNGLSNPYCEVILKTRSQ--GKRNLFSK-KAIKRKTYYVEKTLSPKWINQTFVFEVPSEAANVTRGHSIQVQLRNFGLLGKRAHLGQAEVHLRSLRNQRELVCWYPLRGRTGHQELQKSSAEGGRGSVKLRVQWIYSVPALL 273
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A7S1VMR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMR9_9STRA) HSP 1 Score: 113 bits (282), Expect = 6.510e-23 Identity = 63/162 (38.89%), Postives = 93/162 (57.41%), Query Frame = 1
Query: 484 ISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPL-NRRSSRLMHLAAGDKITGSVKLRVQWVFSVEAL 966
IS HQV ++++ A L+ + G +PYC LK P T + R R +TY+ EK+++PKWS Q FIF VP A RGH +R+ + + LV + +LGQ +V L L+ ++E VGW+PL R R + + + GSV+LRVQWV++V L
Sbjct: 201 ISSRHQVVIQIIEAAGLKTNDVTGKCNPYCEVTLKGP--TKAKRGLLSR-RSNTRKTYYIEKSMAPKWSNQYFIFDVPLNAPIVTRGHSLRISLRNFRLVGGHSYLGQTNVHLRNLRSQKEMVGWYPLVGRTGRRELEDSQANWGRGSVRLRVQWVYTVSGL 359
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: B8CBY6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBY6_THAPS) HSP 1 Score: 110 bits (275), Expect = 9.290e-22 Identity = 68/166 (40.96%), Postives = 89/166 (53.61%), Query Frame = 1
Query: 484 ISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAV---QRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPL-NRRSSRLMHLAAGDKITGSVKLRVQWVFSVEALL 969
I++T+QV V+VL AT L + L G SDPYC LK T KS + R TYF EKTLSP+WS Q F+F VP A + R ++ + S + FLGQ V L L+D++E V W+PL + R + D+ GS+KLRVQWV LL
Sbjct: 4149 ITKTNQVIVQVLEATGLLSSDLNGLSDPYCQVSLK--KHTSSFKSKETR------STYFVEKTLSPQWSQQSFVFDVPAKAAHDPKETRHFSLQCAIKSIQRFSKDKFLGQTHVQLRNLKDQKESVSWYPLMGKLGQREISKDLADRSRGSLKLRVQWVHDYTGLL 4306
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A7S3QG88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QG88_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 9.820e-5 Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 751 VRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSR--LMHLAAGDKITGSVKLRVQWVFSVEALL 969
V V V LV N LG+ ++ L L+ ++E +GWFPL ++ R + A + GS+K+R+QWV++V ALL
Sbjct: 3 VSVKVKGFRLVGKNRPLGRTEIHLRNLRTQKEVIGWFPLLSKTGRGNEFNPAGAGRARGSIKVRIQWVYNVSALL 77 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12091.1775.1 >prot_Ecto-sp13_S_contig12091.1775.1 ID=prot_Ecto-sp13_S_contig12091.1775.1|Name=mRNA_Ecto-sp13_S_contig12091.1775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=485bp AIERSRRTHFRALAALEGRSSQVSPEAVSLTWTGPSAVRRDFTPAAAAVSback to top mRNA from alignment at Ecto-sp13_S_contig12091:798..5184- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12091.1775.1 ID=mRNA_Ecto-sp13_S_contig12091.1775.1|Name=mRNA_Ecto-sp13_S_contig12091.1775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12091:798..5184- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12091:798..5184- >mRNA_Ecto-sp13_S_contig12091.1775.1 ID=mRNA_Ecto-sp13_S_contig12091.1775.1|Name=mRNA_Ecto-sp13_S_contig12091.1775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12091:798..5184- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |