mRNA_Ecto-sp13_S_contig12091.1775.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12091.1775.1
Unique NamemRNA_Ecto-sp13_S_contig12091.1775.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A6H5KMI8_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI8_9PHAE)

HSP 1 Score: 861 bits (2224), Expect = 1.150e-303
Identity = 456/487 (93.63%), Postives = 466/487 (95.69%), Query Frame = 1
Query:    1 AIERSRRTHFRALAALEGRSSQVSPEAVSLTWTGPSAVRRDFTPAAAA--VSVWSNSASPVATPNINTTTENGRPASLSSKADTPRAGSRSFPSRRRQGGDPLALLPVDPGVVTPADAVAVDETGPMSMKNLRELERSLGMNEPKVLEALDAERELANEMRVGISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKITGSVKLRVQWVFSVEALLLSQIRGLELFLGTVEARLQRTRLLIERLNKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSDGKDGTGSAHGDHRKTPPFKSPLRGGGATVPTLGGQLARANSLTPASPTAHGDGSRIVARLSSPSGGGGGPGLSINAQGLRVGGGDANGGGQ 1455
            AIERSRRT+FRALAALEGRSSQ+SPEAVSLTWTGPSAVRRDFTPAAAA  VSVWSNS SP+ATPN  TTTENGRPASLSSKADTPRAGSRSFPSRRRQGGDPLALLPVD GVVTPADAVA D+TGPMSMKNLRELER LGMNEPKVLE LDAER LANEMRVGISETHQVFVEVLAA SLRPTGLQGYSDPYCVCYLK+PDSTGGSKSADDRFRGQ GETYFCEKTL+PKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKITGSVKLRVQWVFS+EALLLS+IR LELFLGTVEARLQRTRLLIERLNKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSD KDGTGSAHGDHRKTPPFKSPLRGGGAT+P  GGQLA ANSLTPASPTAHG GSRIVA LSSPS GGGGPG SINA+GLRVGGGDANGGGQ
Sbjct:  299 AIERSRRTYFRALAALEGRSSQLSPEAVSLTWTGPSAVRRDFTPAAAAAAVSVWSNSGSPMATPNNKTTTENGRPASLSSKADTPRAGSRSFPSRRRQGGDPLALLPVDSGVVTPADAVAADDTGPMSMKNLRELERRLGMNEPKVLEVLDAERVLANEMRVGISETHQVFVEVLAAASLRPTGLQGYSDPYCVCYLKVPDSTGGSKSADDRFRGQGGETYFCEKTLNPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKITGSVKLRVQWVFSLEALLLSRIRDLELFLGTVEARLQRTRLLIERLNKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSDSKDGTGSAHGDHRKTPPFKSPLRGGGATIPMPGGQLACANSLTPASPTAHGYGSRIVAPLSSPSSGGGGPGSSINAEGLRVGGGDANGGGQ 785          
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 852 bits (2202), Expect = 2.320e-278
Identity = 449/485 (92.58%), Postives = 461/485 (95.05%), Query Frame = 1
Query:    1 AIERSRRTHFRALAALEGRSSQVSPEAVSLTWTGPSAVRRDFTPAAAAVSVWSNSASPVATPNINTTTENGRPASLSSKADTPRAGSRSFPSRRRQGGDPLALLPVDPGVVTPADAVAVDETGPMSMKNLRELERSLGMNEPKVLEALDAERELANEMRVGISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKITGSVKLRVQWVFSVEALLLSQIRGLELFLGTVEARLQRTRLLIERLNKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSDGKDGTGSAHGDHRKTPPFKSPLRGGGATVPTLGGQLARANSLTPASPTAHGDGSRIVARLSSPSGGGGGPGLSINAQGLRVGGGDANGGGQ 1455
            AIERSRRTHFRALAALEGRSSQ+SPEAVSLTWTGPSA+RRDFTPAAAAVS WSNSASPVATPN NTTTENGRPASLSSKADTPRAGSRS PSRRRQGGDPLAL PV PGVVTPADAVAVDET PMSMK LRELERSLGM+EPKVL+ LDAER LANEMRVGI+ETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTL+P WSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKI GSVKLRVQWVFS++ALL +QIRGLELFLGTVEARLQR RLLIERL KEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSD KDGTGSAHGDHRKTPPFKSPLRGGGAT+ T GGQL RANSLT ASP+AHG GSRIVARLSSPS GGGGPG SINA+GLR GGGD NGGGQ
Sbjct: 5879 AIERSRRTHFRALAALEGRSSQLSPEAVSLTWTGPSALRRDFTPAAAAVSAWSNSASPVATPNNNTTTENGRPASLSSKADTPRAGSRSLPSRRRQGGDPLALSPVGPGVVTPADAVAVDETEPMSMKQLRELERSLGMDEPKVLQVLDAERVLANEMRVGITETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLNPTWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKIAGSVKLRVQWVFSLDALLHTQIRGLELFLGTVEARLQRIRLLIERLKKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSDSKDGTGSAHGDHRKTPPFKSPLRGGGATITTPGGQLVRANSLTLASPSAHGYGSRIVARLSSPSSGGGGPGFSINAEGLRAGGGDTNGGGQ 6363          
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A836CLN4_9STRA (C2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN4_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.000e-50
Identity = 91/159 (57.23%), Postives = 114/159 (71.70%), Query Frame = 1
Query:  499 QVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKI--TGSVKLRVQWVFSVEALL 969
            QV VEVLAA  LR T LQGY++PYC+ YLK       + +   R +  RG TYFCEKT+ PKW  QR +F VP AA + +RG+ +RV++LSR+ +RPND LGQA VPL LL D+REHVGWFPLN+R+SRLM L+  DK    GSV+LR+QWV +  ALL
Sbjct:    1 QVLVEVLAARGLRGTDLQGYANPYCIIYLK-------ATARRRRRQRPRGATYFCEKTVCPKWVDQRLVFTVPAAAARSQRGYSLRVMILSRDFLRPNDLLGQAAVPLDLLLDQREHVGWFPLNQRASRLMALSQMDKPGGCGSVQLRLQWVHTKTALL 152          
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A7S4MN01_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MN01_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.100e-25
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  484 ISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQR--FIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHL--AAGDKITGSVKLRVQWVFSVEALL 969
            IS  HQV VEV+ A  L+   + G S+PY    LK   +  G      +   +R  TY+ E+TLSPKWS Q   F+F VPP A +  RGH ++V + S  ++  +  LG  +V L  L+++RE VGW+PL  RSS    L  +   ++ GSV+LRVQW++SV ALL
Sbjct: 1810 ISSCHQVLVEVIEAAELKAGNVNGLSNPYAEVSLKSRSNRKGKNLFAKKELNRR--TYYIEQTLSPKWSHQPQIFVFNVPPEAAEMTRGHTIKVKLRSFGVLGSHTHLGTTEVHLRSLKNQRELVGWYPLMSRSSGRSELTQSLSSRVRGSVRLRVQWIYSVPALL 1973          
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A7S2UEQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEQ3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 6.210e-25
Identity = 66/164 (40.24%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  481 GISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRL-MHLAAGDKITGSVKLRVQWVFSVEALL 969
             IS+ +QV +EVL    L+   L G S+PYC   LK      G ++   + +  + +TY+ EKTLSPKW  Q F+F+VP  A    RGH ++V + +  L+     LGQA+V L  L+++RE V W+PL  R+    +  ++ +   GSVKLRVQW++SV ALL
Sbjct:  113 SISQCNQVVIEVLECAGLKAVYLNGLSNPYCEVILKTRSQ--GKRNLFSK-KAIKRKTYYVEKTLSPKWINQTFVFEVPSEAANVTRGHSIQVQLRNFGLLGKRAHLGQAEVHLRSLRNQRELVCWYPLRGRTGHQELQKSSAEGGRGSVKLRVQWIYSVPALL 273          
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A7S1VMR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMR9_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.510e-23
Identity = 63/162 (38.89%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  484 ISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPL-NRRSSRLMHLAAGDKITGSVKLRVQWVFSVEAL 966
            IS  HQV ++++ A  L+   + G  +PYC   LK P  T   +    R R    +TY+ EK+++PKWS Q FIF VP  A    RGH +R+ + +  LV  + +LGQ +V L  L+ ++E VGW+PL  R   R +  +  +   GSV+LRVQWV++V  L
Sbjct:  201 ISSRHQVVIQIIEAAGLKTNDVTGKCNPYCEVTLKGP--TKAKRGLLSR-RSNTRKTYYIEKSMAPKWSNQYFIFDVPLNAPIVTRGHSLRISLRNFRLVGGHSYLGQTNVHLRNLRSQKEMVGWYPLVGRTGRRELEDSQANWGRGSVRLRVQWVYTVSGL 359          
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: B8CBY6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBY6_THAPS)

HSP 1 Score: 110 bits (275), Expect = 9.290e-22
Identity = 68/166 (40.96%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  484 ISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAV---QRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPL-NRRSSRLMHLAAGDKITGSVKLRVQWVFSVEALL 969
            I++T+QV V+VL AT L  + L G SDPYC   LK    T   KS + R       TYF EKTLSP+WS Q F+F VP  A    +  R   ++  + S      + FLGQ  V L  L+D++E V W+PL  +   R +     D+  GS+KLRVQWV     LL
Sbjct: 4149 ITKTNQVIVQVLEATGLLSSDLNGLSDPYCQVSLK--KHTSSFKSKETR------STYFVEKTLSPQWSQQSFVFDVPAKAAHDPKETRHFSLQCAIKSIQRFSKDKFLGQTHVQLRNLKDQKESVSWYPLMGKLGQREISKDLADRSRGSLKLRVQWVHDYTGLL 4306          
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Match: A0A7S3QG88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QG88_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.820e-5
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  751 VRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSR--LMHLAAGDKITGSVKLRVQWVFSVEALL 969
            V V V    LV  N  LG+ ++ L  L+ ++E +GWFPL  ++ R    + A   +  GS+K+R+QWV++V ALL
Sbjct:    3 VSVKVKGFRLVGKNRPLGRTEIHLRNLRTQKEVIGWFPLLSKTGRGNEFNPAGAGRARGSIKVRIQWVYNVSALL 77          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12091.1775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KMI8_9PHAE1.150e-30393.63C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G8Y9_ECTSI2.320e-27892.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLN4_9STRA2.000e-5057.23C2 domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A7S4MN01_9STRA1.100e-2541.57Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2UEQ3_9STRA6.210e-2540.24Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1VMR9_9STRA6.510e-2338.89Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
B8CBY6_THAPS9.290e-2240.96Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3QG88_9STRA9.820e-538.67Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12091contigEcto-sp13_S_contig12091:798..5184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score860.1
Seed ortholog evalue4.8e-247
Seed eggNOG ortholog2880.D7G8Y9
Model size1457
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
Cds size1455
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12091.1775.1prot_Ecto-sp13_S_contig12091.1775.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12091 798..5184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462642.2439945-CDS-Ecto-sp13_S_contig12091:797..11541681462642.2439945-CDS-Ecto-sp13_S_contig12091:797..1154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12091 798..1154 -
1681462642.2552273-CDS-Ecto-sp13_S_contig12091:1392..14971681462642.2552273-CDS-Ecto-sp13_S_contig12091:1392..1497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12091 1393..1497 -
1681462642.2699594-CDS-Ecto-sp13_S_contig12091:1950..21091681462642.2699594-CDS-Ecto-sp13_S_contig12091:1950..2109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12091 1951..2109 -
1681462642.2781105-CDS-Ecto-sp13_S_contig12091:2530..26531681462642.2781105-CDS-Ecto-sp13_S_contig12091:2530..2653Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12091 2531..2653 -
1681462642.2869213-CDS-Ecto-sp13_S_contig12091:3086..32841681462642.2869213-CDS-Ecto-sp13_S_contig12091:3086..3284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12091 3087..3284 -
1681462642.294758-CDS-Ecto-sp13_S_contig12091:3858..39421681462642.294758-CDS-Ecto-sp13_S_contig12091:3858..3942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12091 3859..3942 -
1681462642.302835-CDS-Ecto-sp13_S_contig12091:4755..51841681462642.302835-CDS-Ecto-sp13_S_contig12091:4755..5184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12091 4756..5184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12091.1775.1

>prot_Ecto-sp13_S_contig12091.1775.1 ID=prot_Ecto-sp13_S_contig12091.1775.1|Name=mRNA_Ecto-sp13_S_contig12091.1775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=485bp
AIERSRRTHFRALAALEGRSSQVSPEAVSLTWTGPSAVRRDFTPAAAAVS
VWSNSASPVATPNINTTTENGRPASLSSKADTPRAGSRSFPSRRRQGGDP
LALLPVDPGVVTPADAVAVDETGPMSMKNLRELERSLGMNEPKVLEALDA
ERELANEMRVGISETHQVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDS
TGGSKSADDRFRGQRGETYFCEKTLSPKWSGQRFIFKVPPAAVQRKRGHG
VRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLA
AGDKITGSVKLRVQWVFSVEALLLSQIRGLELFLGTVEARLQRTRLLIER
LNKEEAKDRKTQLGMTVRGRKENSKIARLKRHLEKMGFKGIGSDGKDGTG
SAHGDHRKTPPFKSPLRGGGATVPTLGGQLARANSLTPASPTAHGDGSRI
VARLSSPSGGGGGPGLSINAQGLRVGGGDANGGGQ
back to top

mRNA from alignment at Ecto-sp13_S_contig12091:798..5184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12091.1775.1 ID=mRNA_Ecto-sp13_S_contig12091.1775.1|Name=mRNA_Ecto-sp13_S_contig12091.1775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12091:798..5184- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCATTGAGAGGAGCCGGCGCACGCACTTCCGCGCGCTGGCCGCGCTGGA GGGCCGATCCAGTCAGGTCTCTCCCGAGGCGGTGTCGCTGACGTGGACGG GCCCCTCCGCTGTGAGGCGCGACTTTACTCCCGCCGCCGCCGCCGTCAGC GTGTGGAGCAATTCCGCAAGCCCGGTGGCAACGCCGAATATCAACACCAC CACGGAGAATGGAAGGCCGGCATCGTTGTCGTCGAAGGCCGATACTCCGA GAGCGGGCTCTAGGTCTTTTCCCTCACGGCGGAGACAAGGCGGAGACCCG CTGGCGCTGTTACCGGTGGATCCTGGGGTGGTAACGCCGGCGGATGCCGT TGCGGTTGATGAGACGGGGCCGATGAGCATGAAGAACCTGCGCGAGCTCG AGAGGAGTCTGGGCATGAACGAGCCAAAGGTGCGCGCAAAGCGTGAGAGT CTGTTCGTGCCTTTTGAGCGAGACAGTTGGTGGGTCCGATCATTGCTGCT TTGCTTGTGTTTCGGTGGACGTGGTGTTTGTCTTGCCAAGCACTGTTGCT TTGCCAACCGTTGTTGTTGTTGTTGTTGTTGTTGTGTCTTGACACTTGAC AAACCGTTCCGATCTCTGATCAGTGCCTTCGAGCATCTGTGCGGGTTCAA TTGACATGGACACCTTCCGCAGCCTAACTACAAAAAAGGATACATAAAAA ATTGAATCTCAAGGAGGAATAATGTGATCCATAGACTCGATAAAGGTAAC AGTCAGACGAAGAGTCCCCTAACAGTCATTTTTTCGAAGCAAGTGATGCG CCGGACAACGGAGATCGACAAAGGGAATCGGTGTAGACGTGTGTGTATTC GACTGTTAATATGTTTGGTGTTTGGGTTGACCTCAATGATGCACCGACGA TTCCGCCTTGTCGAATTTGTCGGGTGGTTCGTAACGAAATGATCGCCCGG AGAAAGAAGAGATAGTTCGGAAAACTTTGAAGAGTGCCACTGGCCGACCT TCGTTCAAGTTAGAACCCTGACGACGGTTGTTGACCGGAGAGGTACCTTT GACTTGGCGTAGGAAGGGTGTTTTTGTTGCGGTTGTAAGGAATATTGTTG CTTGTTTTCGTGGGGTCAGGTCGGTCCCTTATTTTTTGTCTACCAATCTC TGAAAGCTCACCGGTGCCGTTCCTTAAACCGGGTACACCCTAAACCGCAC AACCCTTGGCTCTGCTGTGGTGCGGCCTGCATATGCCCTCAGGTCCTGGA GGCGTTGGACGCTGAGCGTGAGCTCGCGAACGAGATGAGGGTTGGTATCT CGGAGACGCACCAAGTCTTTGTCGAGGTAAGTCTCAGCGTGTCCCAGAGT AATTGGTTTTGTGTTTTAGCCGAAGCACCTGCTTGTAGTCATTTCCCACA ATGTGAAGCCAACACTCGTTTGATCACCGATAATACTTCTGTGAAAGCCA ACACTTGTTTGATTACCGATATGTGATTTTTGTTGTTGTCGAGCACTCAC ATATCAGTGTCAGTGTCTATAAGGCAGTAGAAGGATGGCGTTACGAGCAT GGTACCTACCGTAGCAGTAGGCATCCTTCCATCAATCGACTCTCAAGAGA ATTCCGTATTCGTCCGTGTGAATTGTCTATGACGTTTTGTATTTCAGGCT GGATTTCGACCTTACCCCGTTCGACCTGGTGCTTGCTTCTGTTTGCTGCT TTTCGCAATATCCGCTCTGAATGTTGAACTCTCCCCCGCTTGAAACCATG TCGCCCATTTCTTTTGCACGGTATGTCGTGAGGTGTTCGTTTTCTTTTTC ACGAAAACAAAAACATGTTTTCTACATCCACAGCAAATGAAAGGAGTGCA GGGTTTTAGCTATGATTTCATGACGTCATGTTTTTTGTTTGTTGTTCCAG GTGTTGGCTGCGACAAGCCTTCGCCCCACAGGACTCCAGGGCTACTCGGA CCCCTACTGCGTGTGCTACCTCAAAATTCCCGACTCCACCGGGGGATCCA AGTCCGCTGACGACCGATTTCGGGGACAGCGCGGGGAGACCTACTTTTGC GAGAAAACGCTGAGCCCGAAGTGGTCCGGGCAGCGCTTCATTTTCAAGGT ACGTGCGTGGGCAGCTATTTGCGTGCCTGTATTTGTTTTTGTTCTGGAAC ACGACGTTTCACAACGGAATGCGTGAAGCGTGAAGCACTTGCTATCCTCC CACGCACCTCCCGCCTTGATTTTTTTTTTTTGTATGTGAGACCAACAGTT GAGCGTTACCTGTGAATTTCACCTTCCATTCACTCGCCGCTGGTGTGGCC GTACGGTCTATCAAGAGCTGTTGTGCCCTGTGTCGTTGGGGCACGAAGAG TCAGGATGTGGTTGCCTGGAATGAGCTTTGGACGCGCTGCTGGTGCGCAA GGTTGGGATATCCCGTGTTCCGCAATCGCGAAGGCGCTGGGTATTGTTTT TGATGCCACCCCATGTTGCTCCGAAGAAGCCCATAAAATCTCGATTCCGT CGTCCAAACTCCCATCATCTCTTGACTGTAGGTGCCCCCGGCAGCCGTGC AGCGCAAGCGCGGCCACGGCGTACGGGTTTTGGTTCTGTCTCGGAACCTC GTTCGGCCGAATGACTTCCTCGGGCAAGCGGACGTGCCGTTGTCTCTGCT TCAGGTGTGAGGCAGACGAGGCTGGACGTTTTCTCATGTTGGTGGTTGTG GTTCTCGCTGCTGCTACTGCTGTCGTCCAAACTTAAACCACCCATTTCGG GTGTGTGTGTAGCAGTGCTCAGTATTGAGCGGCCCTTTTTCTTTTTTTTT TATGTTCGTGACTGGCCGCTTCGCTGCTGCCGCTGCTGCTGCTGCTACCG TCTCAACACGAAAGTATTTCGACTGTTTGAACAGCAGTGCTAACTACTCA GGTCGTCTTGAGAAGTCTGAATTTTGATTTTTTTTGTGTTGGTGGCTGAA CTCTTCGCTGCTGCTGCTGTGCGTTTACTTTGCAAGAGGTGCCACCCGCA AACAGTAGTGACGTGACCGAAAAGACATGAAACTGACAGTGTGTTCCCCC AAACGGACGACGCGAAACGAGACAGGACGAGAGGGAGCACGTGGGTTGGT TCCCCCTCAATCGCCGAAGCTCCCGTCTCATGCACCTCGCCGCCGGGGAC AAGATCACCGGCTCAGTCAAGCTTCGCGTCCAATGGGTCTTCTCGGTGGA GGCGCTCTTGCTCTCTCAAATTCGAGGTCTAGAGGTGGGTGAGGCGGGTG GGCGGTGTTTGGGCGGGGCTAGAAGAAACCGGCTGTGTATGATACACCCC CACTTTCGCGGCAGGGGCAAGCCGGTCTTCTAGCTCTGCGTGTGTGTTGT TTCATACTCTCATCAGACGGTTGTTTCTTGGTGAGTGAAGAAGAGGCGAG CGTGATGCTGTTGCTTCGTTCATGATTTCCGCTGCTGCTGCTGCTGCTGT GGCCACGAGCCTAAGCGAGGACTGGGGTAGGTGGTTGCGTTGGCATGTTC CCCTGGCCGGTAGTTCTGATCGGTGTTGGTGGTCGGTTCTCAAGCCTCAG TGTGAATTTTAGGTTAACGTTGAGAACATAGCATGCTAACGCGCTTGCGC CTCCCCATTTTTCGATCTCCTTCTCGTCTCCGCGTTCGACCTCCGGCTTT CGTGCTTCGTGGATTGCGCCAACGTGAACACCAACAGTTGTTCCTGGGCA CCGTGGAAGCTAGACTACAGCGGACAAGATTGCTCATCGAGAGGCTCAAC AAGGAGGAGGCGAAAGACAGAAAAACTCAGCTCGGCATGACGGTATGTCA CCTTTTTTGTGGGCACTGGGTGTTGAAAAGTATCACGTCTCGTTTGGTTG GCAAGCGCCTCCGGGCTAGGGTGTGCGAGGCGTGACAAGCTCTTTGGTGT TGATGCCAGTTACCCCACCTAGTACTGCTTTGCACATTAATAGCGACTGA CGTACCTGACCCGCCCTCTCTCCTTTTCGTACCCATATGACCCAATCGTG GCGGCCACGCCGTTTCTGGTACACATACAGGTGCGCGGACGGAAGGAGAA CTCAAAAATTGCCCGGCTCAAGAGGCACCTCGAGAAGATGGGCTTCAAGG GCATCGGCTCCGATGGCAAAGACGGCACAGGCAGCGCCCACGGGGACCAC CGCAAGACGCCACCCTTCAAGTCGCCGCTGAGAGGGGGTGGCGCCACTGT CCCCACACTCGGCGGTCAGCTCGCCCGCGCAAACTCCCTGACGCCGGCGA GCCCGACCGCACACGGCGACGGCAGCAGAATTGTCGCGCGCTTGAGCTCA CCGTCCGGCGGGGGAGGGGGGCCAGGGTTAAGCATCAACGCTCAGGGACT TCGTGTGGGTGGTGGGGACGCCAACGGTGGCGGCCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12091:798..5184-

>mRNA_Ecto-sp13_S_contig12091.1775.1 ID=mRNA_Ecto-sp13_S_contig12091.1775.1|Name=mRNA_Ecto-sp13_S_contig12091.1775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12091:798..5184- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCATTGAGAGGAGCCGGCGCACGCACTTCCGCGCGCTGGCCGCGCTGGA
GGGCCGATCCAGTCAGGTCTCTCCCGAGGCGGTGTCGCTGACGTGGACGG
GCCCCTCCGCTGTGAGGCGCGACTTTACTCCCGCCGCCGCCGCCGTCAGC
GTGTGGAGCAATTCCGCAAGCCCGGTGGCAACGCCGAATATCAACACCAC
CACGGAGAATGGAAGGCCGGCATCGTTGTCGTCGAAGGCCGATACTCCGA
GAGCGGGCTCTAGGTCTTTTCCCTCACGGCGGAGACAAGGCGGAGACCCG
CTGGCGCTGTTACCGGTGGATCCTGGGGTGGTAACGCCGGCGGATGCCGT
TGCGGTTGATGAGACGGGGCCGATGAGCATGAAGAACCTGCGCGAGCTCG
AGAGGAGTCTGGGCATGAACGAGCCAAAGGTCCTGGAGGCGTTGGACGCT
GAGCGTGAGCTCGCGAACGAGATGAGGGTTGGTATCTCGGAGACGCACCA
AGTCTTTGTCGAGGTGTTGGCTGCGACAAGCCTTCGCCCCACAGGACTCC
AGGGCTACTCGGACCCCTACTGCGTGTGCTACCTCAAAATTCCCGACTCC
ACCGGGGGATCCAAGTCCGCTGACGACCGATTTCGGGGACAGCGCGGGGA
GACCTACTTTTGCGAGAAAACGCTGAGCCCGAAGTGGTCCGGGCAGCGCT
TCATTTTCAAGGTGCCCCCGGCAGCCGTGCAGCGCAAGCGCGGCCACGGC
GTACGGGTTTTGGTTCTGTCTCGGAACCTCGTTCGGCCGAATGACTTCCT
CGGGCAAGCGGACGTGCCGTTGTCTCTGCTTCAGGACGAGAGGGAGCACG
TGGGTTGGTTCCCCCTCAATCGCCGAAGCTCCCGTCTCATGCACCTCGCC
GCCGGGGACAAGATCACCGGCTCAGTCAAGCTTCGCGTCCAATGGGTCTT
CTCGGTGGAGGCGCTCTTGCTCTCTCAAATTCGAGGTCTAGAGTTGTTCC
TGGGCACCGTGGAAGCTAGACTACAGCGGACAAGATTGCTCATCGAGAGG
CTCAACAAGGAGGAGGCGAAAGACAGAAAAACTCAGCTCGGCATGACGGT
GCGCGGACGGAAGGAGAACTCAAAAATTGCCCGGCTCAAGAGGCACCTCG
AGAAGATGGGCTTCAAGGGCATCGGCTCCGATGGCAAAGACGGCACAGGC
AGCGCCCACGGGGACCACCGCAAGACGCCACCCTTCAAGTCGCCGCTGAG
AGGGGGTGGCGCCACTGTCCCCACACTCGGCGGTCAGCTCGCCCGCGCAA
ACTCCCTGACGCCGGCGAGCCCGACCGCACACGGCGACGGCAGCAGAATT
GTCGCGCGCTTGAGCTCACCGTCCGGCGGGGGAGGGGGGCCAGGGTTAAG
CATCAACGCTCAGGGACTTCGTGTGGGTGGTGGGGACGCCAACGGTGGCG
GCCAG
back to top