mRNA_Ecto-sp13_S_contig12088.1772.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12088.1772.1
Unique NamemRNA_Ecto-sp13_S_contig12088.1772.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Match: A0A6H5JE67_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE67_9PHAE)

HSP 1 Score: 527 bits (1358), Expect = 1.560e-174
Identity = 362/443 (81.72%), Postives = 371/443 (83.75%), Query Frame = 1
Query:    1 MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLLELGSGVSDSAKDLISRRVPATVYERLTAEEMMQHPWIQ-----GRTAPQRPLKGSDARLARFREVLSQKLETGVVSLLVEGAVAEGNSRNQYTYNPYGGHMDSNSNSRXXXXXXXTGDAEGSRGVVEAVDVVKNAYRAFDRRGTGRISATDIAGVLEEHSASVSEDERRAIDEAVSVARNFRRPSGLRPPVLPHGHVESHPTTVTGE---GDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAARERLSTTAL-----SLPPTPPAATSILGTTXXXXXXXXXXXXXXXXXXXXXXXXPLSTAMEDKEYEPKEAGPGAAQEEDGLDMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAGWQSSGAGDEGGSSPDTTNADSQPPTPTHHAHTR 1290
            MLCG HPFDLDSNSEEEEVIKRVRSGVVPLLELG GVSDSAKDLISRRV A V E    E   +          GRTAPQRPLKGSDARLARFREVLSQKLETGVVS+LVEGAVAEGNS++QYTYNPYGG+M  N+   XXXXXXX  D EGSR VVEAVDVVKNAYRAFDRRGTGRISA DIAGVLEEHSASVSEDERRAIDEAVSVARNFRRPSG RPPVLPH HVES  T  TGE   G+ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 S  PTPPAATSILGT  XXXXXXXXXXXXXXXXXXXX   PLSTAMEDKE EP+EAG GA +EEDGLDMSDFEDLLLDHLKTTEY PGEFVFREGDAPDGGLYFIVEGRVDVLVNSAGWQSSGAGDEGGSSPDTTNADSQPPTP HHAHTR
Sbjct:  425 MLCGAHPFDLDSNSEEEEVIKRVRSGVVPLLELGGGVSDSAKDLISRRV-AVVDEGPEGEADSRGDDAASLDTGGRTAPQRPLKGSDARLARFREVLSQKLETGVVSMLVEGAVAEGNSQDQYTYNPYGGYM-GNNXXXXXXXXXXXXDGEGSRVVVEAVDVVKNAYRAFDRRGTGRISAMDIAGVLEEHSASVSEDERRAIDEAVSVARNFRRPSGSRPPVLPHSHVESPATAATGEDARGNGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQQPTPPAATSILGTATXXXXXXXXXXXXXXXXXXXXTLAPLSTAMEDKEIEPEEAGTGATEEEDGLDMSDFEDLLLDHLKTTEYTPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAGWQSSGAGDEGGSSPDTTNADSQPPTPAHHAHTR 865          
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Match: D7G5Y1_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y1_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 1.200e-84
Identity = 194/430 (45.12%), Postives = 200/430 (46.51%), Query Frame = 1
Query:    1 MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLLELGSGVSDSAKDLISRRVPATVYERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFREVLSQKLETGVVSLLVEGAVAEGNSRNQYTYNPYGGHMDSNSNSRXXXXXXXTGDAEGSRGVVEAVDVVKNAYRAFDRRGTGRISATDIAGVLEEHSASVSEDERRAIDEAVSVARNFRRPSGLRPPVLPHGHVESHPTTVTGEGDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAARERLSTTALSLPPTPPAATSILGTTXXXXXXXXXXXXXXXXXXXXXXXXPLSTAMEDKEYEPKEAGPGAAQEEDGLDMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAGWQSSGAGDEGGSSPDTTNADSQPPTPTHHAHTR 1290
            MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLLELG G+SDSAKDLISR +     ERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFREVLSQKLETGVVS+LVEGAVAE                                                                 DIAGVLEEHSASVSEDERRAIDEAVSVARNFRRPSG +  + P G                                                                                                                                                       EGDAPDGGLYFIVEGRVDVLVNSAGWQSSGAGDEGGSSP TTNADS+PPTP HHAHTR
Sbjct:  420 MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLLELGRGISDSAKDLISRLLTRDPKERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFREVLSQKLETGVVSMLVEGAVAE-----------------------------------------------------------------DIAGVLEEHSASVSEDERRAIDEAVSVARNFRRPSGSKTRLRPQG-------------------------------------------------------------------------------------------------------------------------------------------------------EGDAPDGGLYFIVEGRVDVLVNSAGWQSSGAGDEGGSSPATTNADSRPPTPIHHAHTR 633          
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Match: A0A836CF38_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF38_9STRA)

HSP 1 Score: 151 bits (381), Expect = 4.030e-36
Identity = 86/210 (40.95%), Postives = 126/210 (60.00%), Query Frame = 1
Query:    1 MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLLELGSGVSDSAKDLISRRVPATVYERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFREVLSQKLETGVVSLLVEGAVAEGNSRNQYTYNPYGGHMDSNSNSRXXXXXXXTGDAEGSRGVVEAVDVVKNAYRAFDRRGTGRISATDIAGVLEEHSASVSEDERRAIDEAVSVARNFRRP 630
            ML G HPFD    + ++EV++R+R+  VPL  LG  VSDSAKDLI R +     +RLTA++M++HPW+QGRTA + PL+GSD RLA+F+EVL QKLE G +S++V  +++E  +   +     GG+                G       V EAVD ++ AY AFD+ G G++S  DI  V+ E  +++S +E  A+  AVS   + + P
Sbjct:  186 MLSGRHPFDPAGTATDQEVVERIRTMDVPLDGLGDDVSDSAKDLIGRLMAKDPADRLTAQQMLEHPWVQGRTALEVPLEGSDTRLAQFQEVLRQKLEDGFLSVMVARSMSESPTCTGFA----GGYT--------------VGGGLDKPDVGEAVDAMRRAYEAFDKGGKGKVSVKDIVRVMAEQGSTLSAEEGVALQAAVSARNSNKHP 377          
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Match: D8LCM8_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM8_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 2.320e-35
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 1
Query:  973 MEDKEYEPKEAGPGAAQEEDGLDMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 1191
            ME+ EYEP+EA   A  EEDGLDMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG
Sbjct:    1 MEEHEYEPEEAERAAVGEEDGLDMSDFEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAG 73          
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Match: A0A7S4APK1_9STRA (cGMP-dependent protein kinase n=6 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4APK1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.510e-17
Identity = 73/240 (30.42%), Postives = 114/240 (47.50%), Query Frame = 1
Query:    1 MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLLE--LGSGVSDSAKDLISRRVPATVYERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFREVLSQKLETGVVSLLVEGA-----VAEGNSRNQYTYNPYGGHMDSNSNSRXXXXXXXTGDAEGSRGVVEAVDVVKNAYRAFDRRGTGRISATDIAGVLEEHSASVSEDER-------RAIDEAVSVARNFRRPSGLRPPVLPHGHVESH 678
            ML G HPFD++ +  +EEV   ++   +P ++      +S+SAKDLI R +     +R+TA E++ HPW+QG TA    ++ SD RL++F++ L  KLE  V ++LV        ++E   RN  T N                         GS G V    ++K+A+ AFD  G G ++  DI  V+ E +  V E +        +  D  VS++      SG++    P GH   H
Sbjct:  486 MLMGFHPFDINCDRSDEEVAAAIQDNPLPPMDDVYVGYLSESAKDLIRRLMEPDPTKRMTAYELLHHPWVQGETATTEVIEDSDKRLSKFQD-LRYKLEASVFAVLVNQGHQNLTMSEAKRRNSVTKN-------------------------GSSGDVS---IMKSAFDAFDGDGKGYVTGADIGKVVTERTGEVIETDDANEYLKVKNKDLEVSLSNFSNLFSGMKHKHFPRGHYIFH 696          
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Match: A0A7S2EV06_9STRA (cGMP-dependent protein kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV06_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.930e-16
Identity = 60/184 (32.61%), Postives = 91/184 (49.46%), Query Frame = 1
Query:    1 MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLL--ELGSGVSDSAKDLISRRVPATVYERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFREVLSQKLETGVVSLLVEGAVAEGNSRNQYTYNPYGGHMDSNSNSRXXXXXXXTGDAEGSRGVVEAVDVVKNAYRAFDRRGTGRISATDIAGVL 546
            ML G HPFD+   S +EE+ +R++    P L  E    ++ SA DLI R +     ER+TA EM++HPW++G TA    + GSD +L+RF+E L  KLE G+  +L+      GN  +               N         + D  G +G     +++K A+  FD  G G  +A D+  V+
Sbjct:  365 MLVGVHPFDIGGMSTDEEIEERIKKDPTPPLGPEFTKHLTPSAVDLIKRLMTKDPAERMTAHEMLRHPWVRGETATTTTIAGSDKKLSRFKE-LRNKLEAGIFHVLIN----HGNREHD--------------NFISEAKQVESPDDSGLQG--STTNIMKRAFEVFDSEGKGFANADDLGRVV 527          
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Match: A0A1Z5K2I9_FISSO (cGMP-dependent protein kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2I9_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 3.380e-16
Identity = 75/245 (30.61%), Postives = 124/245 (50.61%), Query Frame = 1
Query:    1 MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLLE--LGSGVSDSAKDLISRRVPATVYERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFREVLSQKLETGVVSLLV----EGA-VAEGNSRNQYTYNPYGGHMDSNSNSRXXXXXXXTGDAEGSRGVVEAVDVVKNAYRAFDRRGTGRISATDIAGVLEEHSASV--SEDERRAI----DEAVSVARNFRRP------SGLRPPVLPHGHVESH 678
            ML G HPFDL   S +EE+ +R+++   P L+  L   +S+SA DLI + +     +RLTA EM+QHPW++G TA +  ++ SD +L+RF+++ S KLE G+ ++LV    EGA ++E  S+          H DS+             D   ++G     ++++ A+  FD  G G +++ D++ +  E + ++  S D +  +     +  S A N          SGL     P GH   H
Sbjct:  337 MLTGVHPFDLRGLSTDEEIEERIKADPSPPLDHHLVGHLSESAIDLIKKLMEKDPNKRLTAYEMLQHPWVRGETALKEKIQDSDKKLSRFKDLRS-KLEAGMFAVLVSQGNEGATMSEARSK----------HDDSD-------------DRRDNKGTH---NIMQRAFAIFDAEGRGFVTSDDLSRIASERTGTLISSSDTKEFLATQSGDISSAASNLSLSQFNKLFSGLHQKHFPRGHYIFH 554          
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Match: A0A7S2XLN2_9STRA (cGMP-dependent protein kinase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLN2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.340e-15
Identity = 57/190 (30.00%), Postives = 93/190 (48.95%), Query Frame = 1
Query:    1 MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLL--ELGSGVSDSAKDLISRRVPATVYERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFREVLSQKLETGVVSLLVEGAVAEGNSRNQYTYNPYGGHMDSNSNSRXXXXXXXTGDAEGSRGVVEAVDVVKNAYRAFDRRGTGRISATDIAGVLEEHSAS 564
            M+ G HPFD+   S ++E+ +R++    P +  E    +S SA DLI + + A   +R+TA+EM+QHPWI G TA    +  SD RL+RF++ L   LE G+ ++LV                   GH   + +            ++G         ++K A+ AFD  G G +++ D+  V+ E + S
Sbjct:  381 MMTGVHPFDVRGMSTDDEIEERIKRDPTPPMGPEFTGHLSSSAIDLIKKLMAADPNDRITADEMLQHPWILGETATTDKMIDSDKRLSRFKD-LRNTLEAGIFAVLVSK-----------------GHRGMSLSESNRDSVEQAYKSKGREESDATSHIMKKAFEAFDLDGKGFVTSEDLGRVVSEATGS 552          
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Match: A0A7S2HLU5_9STRA (cGMP-dependent protein kinase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLU5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.320e-14
Identity = 56/184 (30.43%), Postives = 92/184 (50.00%), Query Frame = 1
Query:    1 MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLL--ELGSGVSDSAKDLISRRVPATVYERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFREVLSQKLETGVVSLLVEGAVAEGNSRNQYTYNPYGGHMDSNSNSRXXXXXXXTGDAEGSRGVVEAVDVVKNAYRAFDRRGTGRISATDIAGVL 546
            ML G HPFD+   S +EE+ +R+ +   P L  E    ++ SA DLI + +     +R+TA+EM++HPW++G TA    +  SD +L+RF++ L  KLE G+  +LV      GN  +  +        +   +         +GD   S       +++K A+  FD  G G  +A D+  V+
Sbjct:  315 MLVGVHPFDVAGMSTDEEIEERIMADPTPPLGPEYTGHLTPSAVDLIQKLMTQDPDKRMTADEMLRHPWVRGETATTTKMADSDKKLSRFKD-LRHKLEAGIFHVLVN----HGNREHNISEARIAAEDEDRRSDGGGVFGSKSGDPRTS-----PTNIMKRAFEVFDSEGKGFATADDLGRVI 488          
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Match: A0A7S2EQ23_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EQ23_TRICV)

HSP 1 Score: 80.5 bits (197), Expect = 1.850e-14
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLLE---LGSGVSDSAKDLISRRVPATVYERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFRE 270
            MLCG HPFDLD  + +EE+ +R+++   P LE       +S SA DL+S+ +     +R++A EM+QHPW++G TA    ++GS  RL++FR+
Sbjct:   26 MLCGAHPFDLDGTASDEEIERRIKTIRRPPLEGSEFTEHLSPSAIDLLSKLMAEDPKQRISANEMLQHPWVRGDTARTNIMEGSAKRLSKFRQ 118          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12088.1772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE67_9PHAE1.560e-17481.72cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
D7G5Y1_ECTSI1.200e-8445.12cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A836CF38_9STRA4.030e-3640.95cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
D8LCM8_ECTSI2.320e-3589.04Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S4APK1_9STRA1.510e-1730.42cGMP-dependent protein kinase n=6 Tax=Pseudo-nitzs... [more]
A0A7S2EV06_9STRA1.930e-1632.61cGMP-dependent protein kinase n=1 Tax=Ditylum brig... [more]
A0A1Z5K2I9_FISSO3.380e-1630.61cGMP-dependent protein kinase n=2 Tax=Fistulifera ... [more]
A0A7S2XLN2_9STRA8.340e-1530.00cGMP-dependent protein kinase n=1 Tax=Attheya sept... [more]
A0A7S2HLU5_9STRA1.320e-1430.43cGMP-dependent protein kinase (Fragment) n=1 Tax=H... [more]
A0A7S2EQ23_TRICV1.850e-1441.94Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12088contigEcto-sp13_S_contig12088:423..4516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score288.9
Seed ortholog evalue3.9e-75
Seed eggNOG ortholog2880.D7G5Y1
Model size1293
KEGG koko:K07376,ko:K08813,ko:K13412
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04626,ko04713,ko04714,ko04730,ko04740,ko04923,ko04970,ko05145,map04022,map04270,map04540,map04611,map04626,map04713,map04714,map04730,map04740,map04923,map04970,map05145
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009931,GO:0009987,GO:0010857,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Exons7
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0664@1,KOG0032@1,KOG0032@2759,KOG0614@2759
Ec32 ortholog descriptionCyclic nucleotide-binding domain
Ec32 orthologEc-03_002290.1
EC2.7.11.1,2.7.11.12
Cds size1293
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12088.1772.1prot_Ecto-sp13_S_contig12088.1772.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12088 423..4516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462641.882765-CDS-Ecto-sp13_S_contig12088:422..6001681462641.882765-CDS-Ecto-sp13_S_contig12088:422..600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12088 423..600 -
1681462641.9007332-CDS-Ecto-sp13_S_contig12088:907..13991681462641.9007332-CDS-Ecto-sp13_S_contig12088:907..1399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12088 908..1399 -
1681462641.913448-CDS-Ecto-sp13_S_contig12088:1705..18001681462641.913448-CDS-Ecto-sp13_S_contig12088:1705..1800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12088 1706..1800 -
1681462641.9240942-CDS-Ecto-sp13_S_contig12088:2391..25861681462641.9240942-CDS-Ecto-sp13_S_contig12088:2391..2586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12088 2392..2586 -
1681462641.933926-CDS-Ecto-sp13_S_contig12088:2807..29331681462641.933926-CDS-Ecto-sp13_S_contig12088:2807..2933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12088 2808..2933 -
1681462641.9438012-CDS-Ecto-sp13_S_contig12088:3832..38771681462641.9438012-CDS-Ecto-sp13_S_contig12088:3832..3877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12088 3833..3877 -
1681462641.9547346-CDS-Ecto-sp13_S_contig12088:4354..45161681462641.9547346-CDS-Ecto-sp13_S_contig12088:4354..4516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12088 4355..4516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12088.1772.1

>prot_Ecto-sp13_S_contig12088.1772.1 ID=prot_Ecto-sp13_S_contig12088.1772.1|Name=mRNA_Ecto-sp13_S_contig12088.1772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=431bp
MLCGTHPFDLDSNSEEEEVIKRVRSGVVPLLELGSGVSDSAKDLISRRVP
ATVYERLTAEEMMQHPWIQGRTAPQRPLKGSDARLARFREVLSQKLETGV
VSLLVEGAVAEGNSRNQYTYNPYGGHMDSNSNSRNSSSSSSTGDAEGSRG
VVEAVDVVKNAYRAFDRRGTGRISATDIAGVLEEHSASVSEDERRAIDEA
VSVARNFRRPSGLRPPVLPHGHVESHPTTVTGEGDSGNGRNSSSSSSSSS
NEDSKAAATATAGGGGAIAARERLSTTALSLPPTPPAATSILGTTATTTA
TAATVSTATAAAATATTLTPLSTAMEDKEYEPKEAGPGAAQEEDGLDMSD
FEDLLLDHLKTTEYPPGEFVFREGDAPDGGLYFIVEGRVDVLVNSAGWQS
SGAGDEGGSSPDTTNADSQPPTPTHHAHTR*
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mRNA from alignment at Ecto-sp13_S_contig12088:423..4516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12088.1772.1 ID=mRNA_Ecto-sp13_S_contig12088.1772.1|Name=mRNA_Ecto-sp13_S_contig12088.1772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4094bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12088:423..4516- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTGTGGGACACATCCGTTCGACCTCGACAGCAACTCCGAGGAGGA GGAAGTGATCAAAAGAGTGCGCTCGGGGGTTGTCCCACTCCTGGAGCTCG GTAGCGGTGTCTCCGACTCTGCCAAGGATCTCATCTCTAGGCGAGTGCCG GCAACAGTCTACGTCAATTTTGCTAACGAATCAATCATGCTTGATAAATG TATGGAATCGGCTAGGTTGGGGGTTAGGGTTAAGGGTAGGGTCTGCATGC CCCCCTGCCTGGTCTTATTTTGTGTTGAGCTTGCTTTTTTTGTGTAGGCA GTCCAGCGACTCACAGGAAAGAGGGCTACCTTCGGAGTCGCGCCGTGGGA GACCATCAGGAGAGGCCGTATGGTAGTTGGATCTTGCGAGCCTTGTCTCC GTTTTTTTCTGAGGAGATGATTCCAATGAAGTATCATCGCAGTGTTGCGT GTCTTGTAGGCCGGGAAGGACATTGATGTCACAGTTTAGTTTAACAAGGT ATCGTGTGGAGAAGTGTTGGGTGGAAGTATACTGTAGGGATGTTTCGCGT GACGATAGCCAATGCCGCAAGTATGAACAACAACGGTGTGATGGTGACAT GGCATGACTGTTACCAGGTTGTTGACGAGGGTTCCAAAGGAGAGGCTGAC AGCGGAGGAGATGATGCAGCACCCGTGGATACAGGTGAAAGAGAGATAGA GAGAGAGAGAGAGAGAGAGAGAGAAAGCCACCACTGTAGAGAGGGGGGTT ACGGACTGACTATTCATTGAGAGACTGAGAGAGAAAACGGCCACCGCCGA GAGGGGGAGAGAGAAAAGGACAAGACTCTTCATAGAGACAGATTGAGAGA GAGAGAAAGAGAGAGGCTGAGACGATTGGTGTACAGCATCGACCTTGTAA AACTGGACGCTACCCTTGTGTGTCGACCTTGAGCATTGCAGTGCAGAGTC GACCTCTTCGATGAACCAGAGTGGAGCATGAAGGTATCGCACAGCAATAG TTTTTTCTTTTGTTGACTGTTGTTTTTTTCCGACTTGAGGCAAGATCGAA GGCTGTTCCCTCAGTGTTGCACTATCGTGATCTGCTCCCTTATTTGAGAG GTCAATATGTACCTAGATGGGCACTAGTGTAGCTGCATGTTTTCCTTGTC ATCCCATTAACTATTGATGACATCGGTCCTTACACCTTCCGGACAGTTCT GGACGCACCAGCTGAGGTATGGCACATGGAAATATGTCGCTGTTCATTTC GCGTTTTTCCTTTTCCCATTTTTTCTTTTTTTTGTTTCGAATTTTCTCTC TTTTATTTTTTCCGTGTTCCTTCTTCTTTAATTTCGAGGTTTCTCACCTC TCTGGAAGGCTTATTTTCGGTTGTGCCTTCCGCATTCTTCGGACACGCAA GTACAGACGCGCGGCAGAAACACCTAGAGCTATTGTATCCCGTGAATGGC ATCCCCTTCCCTGATGTTTCTTTGTCTGTTCTGCTAGGAAACACACACAA TAAAAAACATCCCGCGAGACAGCGTTGACCCCCCCGTGACATCTGTTGAA ACACGACTTGTGCTGCTGCTACTGCTGCTGCAGGGAAGAACGGCACCGCA GAGGCCGTTGAAAGGGAGCGATGCTCGATTGGCCCGTTTCCGGGAGGTCC TAAGCCAGAAGCTGGAGACCGGGGTGGTGTCTTTGCTTGTGGAAGGAGCT GTGGCCGAGGTAAACTATGTTTTCACAAGAGGGTTTTTTGTTTGATTTTG CTATTGCCGTTGTCTGCGTGCGGCCAACGCATGGAAGCTGACAGACATCT GTATGAAGAAGAACGCCAACAGCCAACACCAACAGCTGCAACAACGCAAC AACACGAGGAGAAGCAACACCCGTCCACCTCCGATTCGTTTGCTGCTTTT CCTCAATCCTCCGGTGACGATGTCACACAGGGAAACAGCCGGAACCAATA CACGTACAACCCGTATGGTGGTCACATGGACAGCAATAGCAATAGCAGGA ACAGCAGCAGCAGCAGCAGCACCGGCGACGCGGAGGGTTCTCGAGGAGTT GTCGAGGCGGTGGACGTGGTCAAGAACGCCTACCGGGCTTTCGACCGCCG TGGGACGGGTCGCATCAGCGCCACGGTATGGGACCTTGTGCATTTCACGG TGAAAAGCGTTTTTTTGCTGGTGCATGCCTCCATGCTGGTGCTGCCTCTT TTTGTGTCCTTTCGAATCGTCGAGCCACATTGTTTGGTTGTTGTTCGACG GTGCTGTTTTTTTCTATTTTTTCTTCTCTCTGCTGCTGTATGTTCAATGT GATTTTGCTCGACACACCTTGGAATCAATCCACGTCCAGGACGCCGAGCA ATCTCCTCGTCATTTGTTGAAACCGAGAGTCACAGTCTTTGTCTTCTTGC TCCGACCGGCCCCTAGTCCCATTGCGTCACAATGCTAAAATACGTGTAGG GCAAGCAATGTCCAGTGACTGTTTAAGCTGCAACTGAGCTCACTCATTTT CGCTGACATTGGTGTCCTGCTTTTTCTTCTGCTATCATCCAGTCTTGTCC ACATCCATGTCGACTTCGAACATGATATTTTCAATTGTCAGACTCAGGGA ATTACTTCGTTGTTCTTGCGGTTCGACTTGCATACGTAGTCCCACATAGA TTTCACCCGGCCCGCGCTCTCCTTCCTCTGCCGCCTTGTTGAATATTTTG CACGTACGTGGTACAGGACATCGCGGGTGTTTTAGAAGAGCACAGCGCAT CCGTGAGCGAGGACGAGCGTAGGGCGATCGACGAGGCGGTGTCCGTCGCC AGAAACTTCAGGTCTGCGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGT GGTGATGTTGGCGTTGTTGTGGCTTCTGTTTCTGGTTGTTGTTTTCGTTG CTGTTGTTACTGTTTTGGACGAAGCCATGAAAAATGGAACGCGCCCTCGT GCAAACCCGCAAGAGACGCCGGTCAGGGCGCCGGCCTCCCAGGAAAAACT TTCGATGAAGAATGTCCAAAGACAATCAACAGCACGTATATTCAGCACCT GGTGCGCTGGTTTCATTCCATTTCCCCGCACTTCTCCTCTGTGTGCGTAT TTTTTGTTACCCTGCAGGCGGCCATCGGGATTAAGACCTCCGGTGTTGCC GCACGGCCACGTCGAATCCCATCCTACCACCGTCACCGGAGAGGGCGACA GCGGTAACGGGAGAAACAGCAGCAGCAGCAGTAGCAGCAGCAGCAACGAG GACTCGAAAGCAGCGGCGACGGCGACGGCAGGCGGGGGTGGTGCGATCGC AGCAAGAGAGAGGCTGTCGACAACGGCCCTGTCACTACCACCAACACCAC CGGCGGCGACGTCGATCCTGGGAACAACAGCCACGACAACCGCAACCGCA GCTACTGTTAGTACTGCTACGGCGGCAGCGGCCACGGCCACGACGTTAAC GCCATTGTCCACGGCGATGGAGGATAAGGAGTACGAGCCGAAGGAGGCGG GACCAGGGGCCGCGCAGGAAGAGGACGGGCTTGACATGTCGGACTTCGAG GACCTTCTTCTGGACCACCTGAAGACCACCGAGTACCCGCCCGGGGAGTT TGTCTTCAGGTGAACGTTAGTTTCCTTGTCCTTGACTGTGTTGTGGTTGT TGTTGTTGCATTCATTTCTGTTTTTCGCTCGACGTGTTCGAAGCATTCGC GCGTTTGTTTCTCTTTTTGGGTTATCGTTCGACATGCGCCCCCCCCCGCC CCCCACCCTGTGTTTTTCTTGAGGTATACATCGGCTGGCCGTCGTGTCGG AATCGAAGTTGTTGCTAGTAGCTTTCGCTGTTGGTCGCCGCCTTGACTAT TTTCGCCGGGTTTTTTTTCTTATCTTTTTGGACCCTTTTCCCGTCATTCC TGTTGCACATTTTCAGGGAGGGAGACGCGCCCGATGGTGGCCTGTACTTC ATAGTTGAAGGGCGCGTGGATGTGCTCGTGAACAGCGCGGGCTGGCAGAG CAGTGGTGCCGGGGACGAAGGCGGATCATCCCCGGATACGACGAACGCCG ACTCACAGCCGCCGACGCCGACACACCACGCCCATACGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12088:423..4516-

>mRNA_Ecto-sp13_S_contig12088.1772.1 ID=mRNA_Ecto-sp13_S_contig12088.1772.1|Name=mRNA_Ecto-sp13_S_contig12088.1772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12088:423..4516- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTGTGGGACACATCCGTTCGACCTCGACAGCAACTCCGAGGAGGA
GGAAGTGATCAAAAGAGTGCGCTCGGGGGTTGTCCCACTCCTGGAGCTCG
GTAGCGGTGTCTCCGACTCTGCCAAGGATCTCATCTCTAGGCGAGTGCCG
GCAACAGTCTACGAGAGGCTGACAGCGGAGGAGATGATGCAGCACCCGTG
GATACAGGGAAGAACGGCACCGCAGAGGCCGTTGAAAGGGAGCGATGCTC
GATTGGCCCGTTTCCGGGAGGTCCTAAGCCAGAAGCTGGAGACCGGGGTG
GTGTCTTTGCTTGTGGAAGGAGCTGTGGCCGAGGGAAACAGCCGGAACCA
ATACACGTACAACCCGTATGGTGGTCACATGGACAGCAATAGCAATAGCA
GGAACAGCAGCAGCAGCAGCAGCACCGGCGACGCGGAGGGTTCTCGAGGA
GTTGTCGAGGCGGTGGACGTGGTCAAGAACGCCTACCGGGCTTTCGACCG
CCGTGGGACGGGTCGCATCAGCGCCACGGACATCGCGGGTGTTTTAGAAG
AGCACAGCGCATCCGTGAGCGAGGACGAGCGTAGGGCGATCGACGAGGCG
GTGTCCGTCGCCAGAAACTTCAGGCGGCCATCGGGATTAAGACCTCCGGT
GTTGCCGCACGGCCACGTCGAATCCCATCCTACCACCGTCACCGGAGAGG
GCGACAGCGGTAACGGGAGAAACAGCAGCAGCAGCAGTAGCAGCAGCAGC
AACGAGGACTCGAAAGCAGCGGCGACGGCGACGGCAGGCGGGGGTGGTGC
GATCGCAGCAAGAGAGAGGCTGTCGACAACGGCCCTGTCACTACCACCAA
CACCACCGGCGGCGACGTCGATCCTGGGAACAACAGCCACGACAACCGCA
ACCGCAGCTACTGTTAGTACTGCTACGGCGGCAGCGGCCACGGCCACGAC
GTTAACGCCATTGTCCACGGCGATGGAGGATAAGGAGTACGAGCCGAAGG
AGGCGGGACCAGGGGCCGCGCAGGAAGAGGACGGGCTTGACATGTCGGAC
TTCGAGGACCTTCTTCTGGACCACCTGAAGACCACCGAGTACCCGCCCGG
GGAGTTTGTCTTCAGGGAGGGAGACGCGCCCGATGGTGGCCTGTACTTCA
TAGTTGAAGGGCGCGTGGATGTGCTCGTGAACAGCGCGGGCTGGCAGAGC
AGTGGTGCCGGGGACGAAGGCGGATCATCCCCGGATACGACGAACGCCGA
CTCACAGCCGCCGACGCCGACACACCACGCCCATACGAGGTGA
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