mRNA_Ecto-sp13_S_contig12084.1771.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12084.1771.1
Unique NamemRNA_Ecto-sp13_S_contig12084.1771.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Match: A0A6H5K6H3_9PHAE (FAA_hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H3_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 8.980e-63
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 1
Query:  112 HALEMGGNPDKDPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 405
            HALEMGGNPDK+PPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGR IPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK
Sbjct:   73 HALEMGGNPDKEPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRCIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 170          
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Match: A0A3L7JAA9_9HYPH (FAA hydrolase family protein n=1 Tax=Notoacmeibacter ruber TaxID=2670375 RepID=A0A3L7JAA9_9HYPH)

HSP 1 Score: 182 bits (461), Expect = 2.020e-55
Identity = 84/125 (67.20%), Postives = 99/125 (79.20%), Query Frame = 1
Query:   34 PSLAVVGSDQKFPVRRVYCVGSNYRRHALEMGGNPDKDPPFFFTKPPDAAVDVSAA-GAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 405
            PS+AV G+D +FPVRR++CVG NY  HA EMG +PD++PPFFFTKP DA VD   +  AV+ YPPETEDL +EVE+ VAIGKGGR I P  AL HVF Y VG+DLTRRD+Q AAKK GRPWDC+K
Sbjct:   12 PSVAVAGTDSRFPVRRIFCVGRNYAAHAREMGNDPDREPPFFFTKPADAVVDAGRSENAVIPYPPETEDLHYEVELTVAIGKGGRNIAPDRALDHVFGYAVGLDLTRRDLQAAAKKMGRPWDCAK 136          
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Match: A0A2E7FBA2_9PROT (Fumarylacetoacetate hydrolase n=2 Tax=unclassified Rhodospirillaceae TaxID=41296 RepID=A0A2E7FBA2_9PROT)

HSP 1 Score: 175 bits (443), Expect = 9.570e-53
Identity = 80/134 (59.70%), Postives = 100/134 (74.63%), Query Frame = 1
Query:    4 LQYAVPRVAPPSLAVVGSDQKFPVRRVYCVGSNYRRHALEMGGNPDKDPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 405
            ++YA+P     S+A+ GSD +FPVRR+YCVG NYR HA+EMG +PD+DPPFFF KP DA V+    GA + YPP+TE+L HE+E+V AIG GG  I   DAL HV+ YGVG+DLTRRD+Q  AK+ GRPWD  K
Sbjct:    1 MKYAIPPFEQVSIAIEGSDDRFPVRRIYCVGRNYRAHAIEMGADPDRDPPFFFMKPADAIVE---NGATIPYPPQTENLHHEIELVAAIGAGGADISVADALNHVWGYGVGIDLTRRDIQNKAKEMGRPWDMGK 131          
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Match: A0A2E6XZQ7_9HYPH (Fumarylacetoacetate hydrolase n=1 Tax=Stappia sp. TaxID=1870903 RepID=A0A2E6XZQ7_9HYPH)

HSP 1 Score: 177 bits (449), Expect = 1.850e-52
Identity = 82/132 (62.12%), Postives = 98/132 (74.24%), Query Frame = 1
Query:   10 YAVPRVAPPSLAVVGSDQKFPVRRVYCVGSNYRRHALEMGGNPDKDPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 405
            YA P    PSLA+ GS+ +FPVRRVYCVG NY  HA EMG +PD++PPFFF+KP DA  D   AG ++ YPP TEDL HE+E+VVAIG GG  IP  +AL HV+ YG G+DLTRRD+Q  AKK GRPWD +K
Sbjct:  101 YAFPPAETPSLAIAGSEDRFPVRRVYCVGRNYAAHAREMGNDPDREPPFFFSKPADAVCD---AGCIIPYPPLTEDLHHEMELVVAIGSGGANIPEEEALLHVWGYGAGIDLTRRDLQAEAKKMGRPWDLAK 229          
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Match: K2P9L2_9HYPH (Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Nitratireductor indicus C115 TaxID=1231190 RepID=K2P9L2_9HYPH)

HSP 1 Score: 172 bits (436), Expect = 1.100e-51
Identity = 81/135 (60.00%), Postives = 103/135 (76.30%), Query Frame = 1
Query:    1 DLQYAVPRVAPPSLAVVGSDQKFPVRRVYCVGSNYRRHALEMGGNPDKDPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 405
            D  +A P  APPS+A++ S+++FPVRR++CVG NY  HA EMG +PD++PPFFF+KP DA VD   +G+ + YP  TEDL HE+E+VVAIGKGG  IP  +AL HVF Y VG+DLTRRD+Q AAKK G+PWD  K
Sbjct:    3 DFAFAPP--APPSVAILDSEERFPVRRIFCVGRNYAAHAREMGQDPDREPPFFFSKPADAVVD---SGSTIPYPSLTEDLHHEIELVVAIGKGGSDIPVENALDHVFGYAVGIDLTRRDLQGAAKKKGQPWDWGK 132          
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Match: A0A1I0MW76_9RHOB (Fumarylpyruvate hydrolase n=1 Tax=Aliiroseovarius sediminilitoris TaxID=1173584 RepID=A0A1I0MW76_9RHOB)

HSP 1 Score: 172 bits (435), Expect = 1.600e-51
Identity = 83/134 (61.94%), Postives = 97/134 (72.39%), Query Frame = 1
Query:    4 LQYAVPRVAPPSLAVVGSDQKFPVRRVYCVGSNYRRHALEMGGNPDKDPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 405
            + +A+P  A PSL + GSD +FPVRR+YCVG NY  HA EMG NPD++PPFFF+KP DA V     GA V YPP TE+L HE E+VVAIG GG  IP   AL HV+ Y VG DLTRRD+Q AAKK GRPWD +K
Sbjct:    1 MTWAIPCPAQPSLPITGSDDRFPVRRIYCVGQNYAAHAREMGSNPDQEPPFFFSKPADALV---PDGATVPYPPGTENLHHEAELVVAIGSGGANIPRDTALHHVWGYAVGNDLTRRDIQAAAKKIGRPWDMAK 131          
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Match: UPI000C7FA309 (fumarylacetoacetate hydrolase family protein n=1 Tax=Acidimangrovimonas sediminis TaxID=2056283 RepID=UPI000C7FA309)

HSP 1 Score: 171 bits (434), Expect = 2.140e-51
Identity = 81/133 (60.90%), Postives = 98/133 (73.68%), Query Frame = 1
Query:    7 QYAVPRVAPPSLAVVGSDQKFPVRRVYCVGSNYRRHALEMGGNPDKDPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 405
            ++A+P  A PSLA+ GSD +FPVRR++CVG NY  HA EMG +PD++PPFFFTKP DA +     GA + YPP+TE+L HE E+VVAIG GGR I   DAL HV+ YG G DLTRRDMQ  AK+  RPWD SK
Sbjct:    3 EFAIPAPAQPSLAIAGSDARFPVRRIFCVGRNYADHAREMGHDPDREPPFFFTKPGDAVI---GDGAEIAYPPQTENLHHEAELVVAIGTGGRDIAAADALSHVWGYGAGNDLTRRDMQNKAKEMRRPWDMSK 132          
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Match: A0A4R6EUZ1_9BURK (Fumarylpyruvate hydrolase n=1 Tax=Paraburkholderia sp. BL10I2N1 TaxID=1938796 RepID=A0A4R6EUZ1_9BURK)

HSP 1 Score: 171 bits (433), Expect = 3.320e-51
Identity = 83/132 (62.88%), Postives = 97/132 (73.48%), Query Frame = 1
Query:   10 YAVPRVAPPSLAVVGSDQKFPVRRVYCVGSNYRRHALEMGGNPDKDPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 405
            Y VP+   PS+ V GS  +FPVRRV+CVG NY  HA EMG +PD++PPFFFTKP DA V   AA  VV YPP T DL HE+E+VVAIGKGG+ I P  AL +V+ YGVGVDLTRRD+Q  AKK  RPWD +K
Sbjct:    4 YVVPQPEQPSVEVAGSSSRFPVRRVFCVGRNYADHAREMGADPDREPPFFFTKPADAVV---AARGVVPYPPLTSDLHHEIELVVAIGKGGQSISPDKALDYVWGYGVGVDLTRRDLQAVAKKQSRPWDWAK 132          
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Match: UPI00105EA182 (fumarylacetoacetate hydrolase family protein n=1 Tax=Paraburkholderia flava TaxID=2547393 RepID=UPI00105EA182)

HSP 1 Score: 171 bits (433), Expect = 3.420e-51
Identity = 81/134 (60.45%), Postives = 98/134 (73.13%), Query Frame = 1
Query:    4 LQYAVPRVAPPSLAVVGSDQKFPVRRVYCVGSNYRRHALEMGGNPDKDPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 405
            +Q+A+P  A  S+A+ GSD++FPVRRV+CVG NY  HALEMGGNPD++PPFFF KP DA V    A   + YPP T DL HE+EMV+AIGK G  +   DAL  V+ YG+GVDLTRRD+Q  AKK GRPWD  K
Sbjct:    2 VQFAIPAPAVTSVAIAGSDERFPVRRVFCVGRNYADHALEMGGNPDREPPFFFQKPTDAVV---PAAGTIPYPPLTRDLHHEIEMVIAIGKEGTNVAAGDALDLVWGYGLGVDLTRRDLQGEAKKTGRPWDWGK 132          
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Match: A0A8J3DWL2_9RHOB (Fumarylpyruvate hydrolase n=1 Tax=Agaricicola taiwanensis TaxID=591372 RepID=A0A8J3DWL2_9RHOB)

HSP 1 Score: 171 bits (432), Expect = 3.940e-51
Identity = 79/127 (62.20%), Postives = 98/127 (77.17%), Query Frame = 1
Query:   25 VAPPSLAVVGSDQKFPVRRVYCVGSNYRRHALEMGGNPDKDPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK 405
            +AP  + V G+DQ FPVRR+YCVG NY  HA EMGG+PD++PPFFFTKP DA V    +G+ V YPP+T++L HE+E+VVAIGK G  IP   AL+HV+ Y VG+DLTRRD+Q  AKKAGRPWD +K
Sbjct:    7 IAPSVMPVAGTDQTFPVRRIYCVGQNYADHAREMGGDPDRNPPFFFTKPADAIV---PSGSAVPYPPQTDNLHHEIELVVAIGKAGADIPVDRALEHVYGYTVGIDLTRRDLQAEAKKAGRPWDMAK 130          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12084.1771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6H3_9PHAE8.980e-6397.96FAA_hydrolase domain-containing protein n=1 Tax=Ec... [more]
A0A3L7JAA9_9HYPH2.020e-5567.20FAA hydrolase family protein n=1 Tax=Notoacmeibact... [more]
A0A2E7FBA2_9PROT9.570e-5359.70Fumarylacetoacetate hydrolase n=2 Tax=unclassified... [more]
A0A2E6XZQ7_9HYPH1.850e-5262.12Fumarylacetoacetate hydrolase n=1 Tax=Stappia sp. ... [more]
K2P9L2_9HYPH1.100e-5160.00Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Nitrat... [more]
A0A1I0MW76_9RHOB1.600e-5161.94Fumarylpyruvate hydrolase n=1 Tax=Aliiroseovarius ... [more]
UPI000C7FA3092.140e-5160.90fumarylacetoacetate hydrolase family protein n=1 T... [more]
A0A4R6EUZ1_9BURK3.320e-5162.88Fumarylpyruvate hydrolase n=1 Tax=Paraburkholderia... [more]
UPI00105EA1823.420e-5160.45fumarylacetoacetate hydrolase family protein n=1 T... [more]
A0A8J3DWL2_9RHOB3.940e-5162.20Fumarylpyruvate hydrolase n=1 Tax=Agaricicola taiw... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12084contigEcto-sp13_S_contig12084:3452..4960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score174.5
Seed ortholog evalue3.4e-41
Seed eggNOG ortholog1231190.NA8A_03620
Model size405
KEGG rclassRC00326,RC00446
KEGG koko:K16165
KEGG ReactionR01085
KEGG Pathwayko00350,ko01100,ko01120,map00350,map01100,map01120
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.fumarylacetoacetate (FAA) hydrolase
EggNOG OGs1MVFA@1224,2TRTM@28211,43HQK@69277,COG0179@1,COG0179@2
EC3.7.1.20
Cds size405
COG Functional cat.Q
Best tax levelPhyllobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462641.8311315-CDS-Ecto-sp13_S_contig12084:3451..35621681462641.8311315-CDS-Ecto-sp13_S_contig12084:3451..3562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12084 3452..3562 +
1681462641.8428855-CDS-Ecto-sp13_S_contig12084:4097..42631681462641.8428855-CDS-Ecto-sp13_S_contig12084:4097..4263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12084 4098..4263 +
1681462641.8520684-CDS-Ecto-sp13_S_contig12084:4832..49601681462641.8520684-CDS-Ecto-sp13_S_contig12084:4832..4960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12084 4833..4960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12084.1771.1prot_Ecto-sp13_S_contig12084.1771.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12084 3452..4960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12084.1771.1

>prot_Ecto-sp13_S_contig12084.1771.1 ID=prot_Ecto-sp13_S_contig12084.1771.1|Name=mRNA_Ecto-sp13_S_contig12084.1771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
DLQYAVPRVAPPSLAVVGSDQKFPVRRVYCVGSNYRRHALEMGGNPDKDP
PFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRGIPPR
DALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSK
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mRNA from alignment at Ecto-sp13_S_contig12084:3452..4960+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12084.1771.1 ID=mRNA_Ecto-sp13_S_contig12084.1771.1|Name=mRNA_Ecto-sp13_S_contig12084.1771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1509bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12084:3452..4960+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATCTCCAGTACGCCGTGCCCAGGGTTGCTCCGCCGAGCCTAGCCGTGGT TGGCTCCGACCAGAAGTTCCCCGTCAGGCGTGTGTACTGCGTGGGAAGCA ACTACAGGCGAGTCAGCGATTACAGAGTGCGCTCGGAGTTGGGTATTGTT ACGTGGCACGAGCCAACGTGAGCCACGAGCAAGGCCTCCGCACGAAGAGC GAGTTGCACCGCAAATAGCCAGTGCACGCCCGCAGCACCTTCCCTCCCTT CCCAGAGTCGATTTCCGTATCCAACTCAGTCCTCATTTTAGTACCACCGA GGGGCGAGCTCCACGTCTCGCCATCTAGAAAGAACCAGAGCGGAAGAGCT GGTAGGTTCGTTGAACGCTGATTGTCCTAACCCCCGCGGCGGAGCTCACA CATGTTCAACCTCCCCTCACAACAAAGGGGTAGTAACGTGTAACTGCCCG ACACCAACTTCAGCCGATTTATGATTTATCCACCAGACTACAATATAGAC GACGACTGTAGTTTGCTTACTTACCAAAACACTGCGAAGACTGCTGGGGA CGACGACATACGTACCCCGCTGTGCTTTCCCCTCAAGGACGGGCCTCTTG TAACCCACCTCCCCCTGTCCCCGCCCACGCGTACGCTCGCAGAGAGCACG CGCTAGAGATGGGAGGCAACCCGGACAAAGACCCCCCCTTCTTCTTCACC AAGCCACCGGACGCCGCCGTCGATGTTTCCGCGGCCGGCGCGGTCGTCCA CTACCCGCCGGAGACGGAAGATCTTCAGCACGAGGTGGAGATGGTCGTTG CCATCGGGAAGGGTGGGTCTGCAGTGACTACCGCTCTGCAGAGATGGTAC CTGGTCGAAGTCCTTGTTTGTGCTGAACACGTCCATGCCCAAAAAGGGGC AATTTAGTGTTGTCGCCTTAGTAACGCAAAAGCAGCGGCTGACTCAAGCA CTCGCGGCAAACGACGTACTGATGCGTAGAAGGGGACACACACCAAGCCC TGTGTATTGGGTATGGTTGATGTTCTGCTTTCGCGCCGCACAATGTAGTG TCGTGCAGATCGGTGTGTGGATGTGCGTACGATTGAACTGGCCCACATCG TCGTGTTGTAACGTGTGACTCGGTTTGAAGCGCCTGCCAAGACCGGCAAG GTCCTACCGAATTTCGCCGCAAGGGCGTTGACTTTCAAGATAGAGAGAGA ACTCAAACATGCGCACACGATTTTGGATACGCTTCAGCAGCAGTGTTAAA CAGCTCAAATAGCGCGAAGCCGCCATAGCAGCAGCTTTTGGTTGTGGACG ATGCAGTTTTGGAGTACGGTAGAATTTTCCAGCATCAACACAACAATGTC AACATGCTTTGTGTAACCCAACGGCTGGTAGGCGGCCGTGGCATCCCACC GCGAGACGCTCTGCAACACGTCTTCGCCTACGGCGTTGGCGTGGATCTCA CTCGGCGGGACATGCAGCGCGCCGCTAAGAAGGCCGGTCGCCCGTGGGAT TGTAGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12084:3452..4960+

>mRNA_Ecto-sp13_S_contig12084.1771.1 ID=mRNA_Ecto-sp13_S_contig12084.1771.1|Name=mRNA_Ecto-sp13_S_contig12084.1771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12084:3452..4960+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATCTCCAGTACGCCGTGCCCAGGGTTGCTCCGCCGAGCCTAGCCGTGGT
TGGCTCCGACCAGAAGTTCCCCGTCAGGCGTGTGTACTGCGTGGGAAGCA
ACTACAGGCGACACGCGCTAGAGATGGGAGGCAACCCGGACAAAGACCCC
CCCTTCTTCTTCACCAAGCCACCGGACGCCGCCGTCGATGTTTCCGCGGC
CGGCGCGGTCGTCCACTACCCGCCGGAGACGGAAGATCTTCAGCACGAGG
TGGAGATGGTCGTTGCCATCGGGAAGGGCGGCCGTGGCATCCCACCGCGA
GACGCTCTGCAACACGTCTTCGCCTACGGCGTTGGCGTGGATCTCACTCG
GCGGGACATGCAGCGCGCCGCTAAGAAGGCCGGTCGCCCGTGGGATTGTA
GCAAG
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