mRNA_Ecto-sp13_S_contig12082.1769.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12082.1769.1
Unique NamemRNA_Ecto-sp13_S_contig12082.1769.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12082.1769.1 vs. uniprot
Match: D7FJL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL7_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 2.030e-97
Identity = 152/183 (83.06%), Postives = 164/183 (89.62%), Query Frame = 1 
Query:    1 DGFATVSEYTNGDTFDLRPGKLMGICVDLMADYCEPCGEYVKYRCNDSNREKFGYGPVSRRLPLVDGIAGRKGSLAHFDLRIEACSGVGTALAGALEIRQLTDEDGLTERHRRLKLEIVSQVVTHTGGCPRCSMYIPQSAMVCEMRNFPVPEGFVYAPDPGGGAAHPASEVAEVAPVRPSATN 549
            DGFATVSEYTNGD FDLRPG+ +GI VDL+ADYCEP GE+V YRCND +REKFGYGPVSR LPLVD IA RKG+LAHFDLRI+ACS VG ALA AL+IRQLTDEDGL E HRRLKLEIVSQVV H GGCPRCSM+IPQSA+VCEM NFPVP+GFVYAPDPGGGA HPA+EVAEVAP RPSATN
Sbjct: 1219 DGFATVSEYTNGDMFDLRPGEPLGIRVDLVADYCEPSGEHVTYRCNDGDREKFGYGPVSRLLPLVDSIAVRKGALAHFDLRIKACSSVGAALAEALKIRQLTDEDGLAEHHRRLKLEIVSQVVIHPGGCPRCSMHIPQSAVVCEMCNFPVPDGFVYAPDPGGGAVHPAAEVAEVAPARPSATN 1401
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BLAST of mRNA_Ecto-sp13_S_contig12082.1769.1 vs. uniprot
Match: A0A6H5KW95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW95_9PHAE)

HSP 1 Score: 310 bits (795), Expect = 2.970e-96
Identity = 151/183 (82.51%), Postives = 163/183 (89.07%), Query Frame = 1 
Query:    1 DGFATVSEYTNGDTFDLRPGKLMGICVDLMADYCEPCGEYVKYRCNDSNREKFGYGPVSRRLPLVDGIAGRKGSLAHFDLRIEACSGVGTALAGALEIRQLTDEDGLTERHRRLKLEIVSQVVTHTGGCPRCSMYIPQSAMVCEMRNFPVPEGFVYAPDPGGGAAHPASEVAEVAPVRPSATN 549
            DGFATVSEYTNGD FDLRPG+ +GI VDL+ADY EP G++V YRCND +R++FGYG VSRRLPLVDGIA RKG+LAHFDLRIEACS VGTALA ALEIRQLTDEDGLTE HRRLKLEIVSQVV H GGCPRCSM+IPQSA+ CEM  FPVPEGFVYAPD GGGA HPA+EVAEVAP RPSATN
Sbjct:  915 DGFATVSEYTNGDMFDLRPGEPLGIRVDLVADYYEPSGKHVTYRCNDGDRKEFGYGLVSRRLPLVDGIAVRKGALAHFDLRIEACSSVGTALAEALEIRQLTDEDGLTEHHRRLKLEIVSQVVIHPGGCPRCSMHIPQSAVACEMCEFPVPEGFVYAPDAGGGAVHPAAEVAEVAPARPSATN 1097
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BLAST of mRNA_Ecto-sp13_S_contig12082.1769.1 vs. uniprot
Match: D7FUD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD8_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.400e-37
Identity = 75/123 (60.98%), Postives = 89/123 (72.36%), Query Frame = 1 
Query:    1 DGFATVSEYTNGDTFDLRPGKLMGICVDLMADYCEPCGEYVKYRCNDSNREKFG-YGPVSRRLPLVDGIAGRKGSLAHFDLRIEACSGVGTALAGALEIRQLTDEDGLTERHRRLKLEIVSQV 366
            DGFATVS YT GD FDLRP + +G+   L+A+Y +P G+     CND  R+K+G +GPVS  LPL DGIA RKG+L HFDLRIE CS VG ALAGAL++ QLT+EDG  E  RRL LE  SQV
Sbjct: 1262 DGFATVSNYTTGDMFDLRPCEFLGVRAGLVAEYLDPDGDLQTMLCNDETRKKWGCFGPVSTDLPLADGIALRKGALPHFDLRIETCSRVGIALAGALKLPQLTNEDGEKELRRRLTLETESQV 1384
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12082.1769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJL7_ECTSI2.030e-9783.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW95_9PHAE2.970e-9682.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUD8_ECTSI2.400e-3760.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12082contigEcto-sp13_S_contig12082:93..1354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size552
Hectar predicted targeting categoryother localisation
Exons3
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462641.7261775-CDS-Ecto-sp13_S_contig12082:92..2211681462641.7261775-CDS-Ecto-sp13_S_contig12082:92..221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12082 93..221 +
1681462641.7391312-CDS-Ecto-sp13_S_contig12082:638..8721681462641.7391312-CDS-Ecto-sp13_S_contig12082:638..872Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12082 639..872 +
1681462641.7483966-CDS-Ecto-sp13_S_contig12082:1165..13541681462641.7483966-CDS-Ecto-sp13_S_contig12082:1165..1354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12082 1166..1354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12082.1769.1prot_Ecto-sp13_S_contig12082.1769.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12082 93..1354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12082.1769.1

>prot_Ecto-sp13_S_contig12082.1769.1 ID=prot_Ecto-sp13_S_contig12082.1769.1|Name=mRNA_Ecto-sp13_S_contig12082.1769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
DGFATVSEYTNGDTFDLRPGKLMGICVDLMADYCEPCGEYVKYRCNDSNR
EKFGYGPVSRRLPLVDGIAGRKGSLAHFDLRIEACSGVGTALAGALEIRQ
LTDEDGLTERHRRLKLEIVSQVVTHTGGCPRCSMYIPQSAMVCEMRNFPV
PEGFVYAPDPGGGAAHPASEVAEVAPVRPSATN*
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mRNA from alignment at Ecto-sp13_S_contig12082:93..1354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12082.1769.1 ID=mRNA_Ecto-sp13_S_contig12082.1769.1|Name=mRNA_Ecto-sp13_S_contig12082.1769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1262bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12082:93..1354+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGTTTCGCCACCGTGTCCGAATACACCAATGGTGACACGTTCGACCT
GCGGCCTGGCAAACTTATGGGGATTTGCGTCGACCTTATGGCCGACTACT
GCGAGCCTTGTGGCGAATATGTGAAATATGTGAGTGAGTGCCTGTGGGTT
GAATCGGTTGTACCGTACTCCCTTCGTGCGGCATATCCGAGAAGAAAGGT
TGCAGCCAACAATGATACCAGAGAGCACCCGTTGTCAGCGTATCATACCT
ATCACACCCGACATTCTCTATTTAGTCACATGCGCACAACGCGCACAACC
ATGGCCGACACTTCATCGAGGAACGCAGAATGGTTAACTCTGCATGGTGA
CTGCCACACATTCGGGTAGCTAATCCGTCGCTCAACCTCCACACGTGCTC
CCCGCGAAGCTGTGCGTTTGCTCAATCTCCTTCGAGGTCGTTGTCAAGGT
CAAAGTCGAGCTTGATGCTTTCGTCTGTATCCGCTAACCGGAACCTTCCC
CAATCACGCGTTTGTTCGTATGTGTTTGCCTGCCTTCGTGTTTCAGCGGT
GCAACGACAGCAATAGGGAGAAATTTGGTTACGGGCCTGTTTCGAGACGC
CTTCCCTTGGTCGACGGCATCGCCGGTCGGAAGGGTTCTCTGGCACACTT
TGATCTGCGGATCGAAGCTTGCTCCGGCGTTGGCACCGCCCTTGCTGGGG
CATTAGAGATTCGGCAGCTAACGGACGAGGACGGCCTGACCGAGCGTCAC
CGCCGCTTGAAGCTGGAGATTGTGTCCCAGGTAGAGTTAACGCTATTCTC
AAGCATTTTAGAATTGTTTTCTTCACCCCTTAGTTAGTCTAAGATGCAGT
GAAGAATGAGCGCGCGATACAACGTGAGCAGGAGTGCTCGTCACGCATGT
TGATCAACGGGTGAGATCATTTGCCAGCCGTCTACATGGCGATGCCGCCA
CTGCTCTAAAGCGTTGGCGTACGTACGTGTACCATCCACGTTCTCGACTG
GTTTCCCTCCTACGACGAAAGCGTGATGTCGACGAACTGCATCCTCATCC
GCACTTGCCTTCGCCCCACATAGGTTGTCACTCATACTGGAGGGTGCCCA
AGGTGCTCGATGTACATCCCGCAGTCAGCGATGGTGTGCGAAATGCGTAA
TTTCCCAGTGCCGGAGGGATTCGTGTACGCTCCGGATCCGGGAGGCGGTG
CTGCGCATCCGGCATCGGAGGTGGCGGAGGTAGCGCCAGTCAGACCCTCA
GCGACCAACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12082:93..1354+

>mRNA_Ecto-sp13_S_contig12082.1769.1 ID=mRNA_Ecto-sp13_S_contig12082.1769.1|Name=mRNA_Ecto-sp13_S_contig12082.1769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12082:93..1354+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGTTTCGCCACCGTGTCCGAATACACCAATGGTGACACGTTCGACCT
GCGGCCTGGCAAACTTATGGGGATTTGCGTCGACCTTATGGCCGACTACT
GCGAGCCTTGTGGCGAATATGTGAAATATCGGTGCAACGACAGCAATAGG
GAGAAATTTGGTTACGGGCCTGTTTCGAGACGCCTTCCCTTGGTCGACGG
CATCGCCGGTCGGAAGGGTTCTCTGGCACACTTTGATCTGCGGATCGAAG
CTTGCTCCGGCGTTGGCACCGCCCTTGCTGGGGCATTAGAGATTCGGCAG
CTAACGGACGAGGACGGCCTGACCGAGCGTCACCGCCGCTTGAAGCTGGA
GATTGTGTCCCAGGTTGTCACTCATACTGGAGGGTGCCCAAGGTGCTCGA
TGTACATCCCGCAGTCAGCGATGGTGTGCGAAATGCGTAATTTCCCAGTG
CCGGAGGGATTCGTGTACGCTCCGGATCCGGGAGGCGGTGCTGCGCATCC
GGCATCGGAGGTGGCGGAGGTAGCGCCAGTCAGACCCTCAGCGACCAACT
AA
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