mRNA_Ecto-sp13_S_contig12081.1768.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Match: A0A6H5JG89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG89_9PHAE) HSP 1 Score: 806 bits (2083), Expect = 7.040e-290 Identity = 419/480 (87.29%), Postives = 435/480 (90.62%), Query Frame = 1
Query: 1 MIHHRRVAQPDGGSDKQLASPPHHSPPRGAGASTSGFAGRTRTAVTEHGIPDGAMHTAVDGNRPAPAAELAKGHCCSAPANELPSGTSGAGDGVHRERYWLKGRRLVGKTILGTLAAGTLTLLIASEGLTTMLGSPARSPPPLYHRHRTVFDSAAQHTGRYDYGGRDATGRDAGGAAGTTAWIETVAGCTGPEDGFVYGGEAGSVLTFVRKGREDGGDSGVXXXXXXXXXXGNPSLPQVLRWFWNLKHERGVLAYEVAELNERRDVGQETGWEVVFASNVGRHKPFPSAGPAESPWEPSAFNFYKASPLEFVLSYTPSFRYEQEIATAAAAAAGRRTQAEDNGGVSVDTDAKVAGSTAAKSARGAAAVGEGKAVAITSALRGGGVGLRMKLDGVAPAVGCGEASTASPPQDAVLVNIRPVGPVSLLLTPGYPNSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQA 1440
MIHHRRVAQP+GGSD Q AS PHHSP RGAGAS+S FAGRTRTAVTEHGIP GA HTAVDGNRPAPA ELA+GHCCSAPANE GTSGAGDGVHRERYW GRRLVGKTILGTLAAGTLTLL+AS+GLTTMLGS A+SP PL HRHRTVFDSAAQ TGRYDYGGRDATGR AGGAAGT AWIETVAGCTGPEDGFVYGGEAGSVLTFVRKGREDGGDSGV G+PSLPQVLRWFWNLKHERGVLAYEVAELNERRDVGQETGWEVVFASNVGRHKPFP AGPAESPW+P AFNFYKASPLEFVLSYTPSFRYE+EIA AA GRRTQAEDNGGV V+ D + AGS AAK+ARG+AAVGEGK V ITSA RGGGVGL+M +DGVAPAVGCGEASTASPPQDAVLVNIRPVGPVSLLLTPGYP+SHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQA
Sbjct: 1 MIHHRRVAQPEGGSDTQSASRPHHSPRRGAGASSSSFAGRTRTAVTEHGIPHGATHTAVDGNRPAPAVELAEGHCCSAPANEPAGGTSGAGDGVHRERYWPNGRRLVGKTILGTLAAGTLTLLVASDGLTTMLGSSAKSPRPLSHRHRTVFDSAAQQTGRYDYGGRDATGRGAGGAAGTAAWIETVAGCTGPEDGFVYGGEAGSVLTFVRKGREDGGDSGVAAAAAAA---GHPSLPQVLRWFWNLKHERGVLAYEVAELNERRDVGQETGWEVVFASNVGRHKPFPPAGPAESPWDPYAFNFYKASPLEFVLSYTPSFRYEREIA-AAXXXXGRRTQAEDNGGVLVEADVEAAGSAAAKAARGSAAVGEGKTVTITSARRGGGVGLQMNVDGVAPAVGCGEASTASPPQDAVLVNIRPVGPVSLLLTPGYPHSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQA 476
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Match: D7G939_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G939_ECTSI) HSP 1 Score: 623 bits (1606), Expect = 9.090e-219 Identity = 333/374 (89.04%), Postives = 345/374 (92.25%), Query Frame = 1
Query: 337 GTLAAGTLTLLIASEGLTTMLGSPARSPPPLYHRHRTVFDSAAQHTGRYDYGGRDATGRDAGGAAGTTAWIETVAGCTGPEDGFVYGGEAGSVLTFVRKGREDGGDSGVXXXXXXXXXXGNPSLPQVLRWFWNLKHERGVLAYEVAELNERRDVGQETGWEVVFASNVGRHKPFPSAGPAESPWEPSAFNFYKASPLEFVLSYTPSFRYEQEIATAAAAAA-------GRRTQAEDNGGVSVDTDAKVAGSTAAKSARGAAAVGEGKAVAITSALRGGGVGLRMKLDGVAPAVGCGEASTASPPQDAVLVNIRPVGPVSLLLTPGYPNSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQ 1437
G L++GTLTLL+ASEGLTT+LGSPARSPPPL HRHRTVFDSAAQ TGRYDYGGRDATGRDAGGAAG AWIETVAGCTGPEDGFVYGGEAGSVLTFVRKGREDGGDSGV XXXXXX G+PSLPQVLRWFWNLKHERGVLAYEVAELNERRDVGQETGW VVFASNVGRHKPFP AGPAESPW+PSAFNFYKASPLEFVLSYTPSFRY +EI AA+ GRRTQA+DN GVSV+TDAK AGSTAAK+ARGAA VGEGKAVAITSALRGGGVGL MKLDGVAPAVGCGEASTASPPQDAVLVNIRPVGPVSLLLTPGY +SHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQ
Sbjct: 18 GILSSGTLTLLVASEGLTTILGSPARSPPPLSHRHRTVFDSAAQQTGRYDYGGRDATGRDAGGAAGAAAWIETVAGCTGPEDGFVYGGEAGSVLTFVRKGREDGGDSGVAXXXXXXA--GHPSLPQVLRWFWNLKHERGVLAYEVAELNERRDVGQETGWGVVFASNVGRHKPFPPAGPAESPWDPSAFNFYKASPLEFVLSYTPSFRYGREIPEAASXXXXXXXXXXGRRTQAKDNDGVSVETDAKAAGSTAAKAARGAAEVGEGKAVAITSALRGGGVGLPMKLDGVAPAVGCGEASTASPPQDAVLVNIRPVGPVSLLLTPGYAHSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQ 389
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Match: A0A6H5JHT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT3_9PHAE) HSP 1 Score: 114 bits (285), Expect = 4.350e-27 Identity = 68/132 (51.52%), Postives = 80/132 (60.61%), Query Frame = 1
Query: 394 MLGSPARSPPPLYHRHRTVFDSAAQHTGRYDYGGRDATGRDAGGAAGT-TAWIETVAGCTGPEDGFVYGGEAGSVLTFVRKGREDGGDSGVXXXXXXXXXXGNPSLPQVLRWFWNLKHERGVLAYEVAELNE 786
MLGS A +PPPL RHRT FDSAAQ GRYD GG DATG DAGGAAG+ +AWIET C+G + E ++L + S PQVLRWFW+L+HERGVLAY+VAEL+E
Sbjct: 1 MLGSSANTPPPLSRRHRTAFDSAAQQAGRYDGGGDDATGHDAGGAAGSASAWIET---CSGVRE------ETAAMLMLLD----------------------TLSCPQVLRWFWSLEHERGVLAYDVAELSE 101
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Match: A0A2T7DD07_9POAL (Uncharacterized protein n=8 Tax=Paniceae TaxID=147428 RepID=A0A2T7DD07_9POAL) HSP 1 Score: 60.8 bits (146), Expect = 2.470e-6 Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 1201 GEASTASPPQDAVLVNIRPVGPVSLLLTPGYPNSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQA 1440
G T S A+L+N+ P+G +LLTP + QR S +A+ A R +P FR+G+NS G A++NHLHFQA
Sbjct: 158 GAPDTISASSSAILINVSPIGYCHVLLTPKIQDCLPQRIDEESFLIAMYIAREAR-NPFFRVGYNSLGGFATINHLHFQA 236
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Match: A0A6V2QQN2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QQN2_HETAK) HSP 1 Score: 59.7 bits (143), Expect = 4.830e-6 Identity = 36/71 (50.70%), Postives = 40/71 (56.34%), Query Frame = 1
Query: 1234 AVLVNIRPVGPVSLLLTPGYPNSHNQRATAYSLAVAIDFAEALRV---DPGFRLGFNSAGSSASVNHLHFQ 1437
AV N RP G + LL P Y Q A +LAVA+ F AL G RLGFNS G+ ASVNHLHFQ
Sbjct: 279 AVYANARPFGRLCFLLLPFYGRDRPQVADGSALAVALHFMGALAARGGGGGVRLGFNSLGACASVNHLHFQ 349
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Match: A0A1B6Q7Q1_SORBI (Uncharacterized protein n=9 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6Q7Q1_SORBI) HSP 1 Score: 59.7 bits (143), Expect = 5.540e-6 Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 1201 GEASTASPPQDAVLVNIRPVGPVSLLLTPGYPNSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQA 1440
G T S A+L+N+ P+G LLTP + QR S +A+ A R +P FR+G+NS G A++NHLHFQA
Sbjct: 153 GVPDTVSASSSAILINVSPIGYCHALLTPKIQDCLPQRIDQESFLIAMYVAREAR-NPFFRVGYNSLGGFATINHLHFQA 231
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Match: A0A0E0JSB5_ORYPU (Uncharacterized protein n=9 Tax=Oryza TaxID=4527 RepID=A0A0E0JSB5_ORYPU) HSP 1 Score: 58.9 bits (141), Expect = 7.860e-6 Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 1204 EASTASPPQDAVLVNIRPVGPVSLLLTPGYPNSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQA 1440
+A ASP A+L+N+ P+G +LL P + QR S +A+ A R DP FR+G+NS G A++NHLHFQA
Sbjct: 100 DAVAASP--SAILINVSPIGYCHVLLIPRIQDCLPQRVDKESFLLAMYVAREAR-DPFFRVGYNSLGGFATINHLHFQA 175
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Match: A0A368REI1_SETIT (Uncharacterized protein n=4 Tax=Setaria TaxID=4554 RepID=A0A368REI1_SETIT) HSP 1 Score: 58.5 bits (140), Expect = 1.350e-5 Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 1213 TASPPQDAVLVNIRPVGPVSLLLTPGYPNSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQA 1440
T S A+L+N+ P+G +LLTP + QR S +A+ A R +P FR+G+NS G A++NHLHFQA
Sbjct: 162 TVSSSSSAILINVSPIGYCHVLLTPQIQDCLPQRIDHESFLMAMYVAREAR-NPFFRVGYNSLGGFATINHLHFQA 236
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Match: A0A8J5R971_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5R971_ZIZPA) HSP 1 Score: 57.8 bits (138), Expect = 1.700e-5 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 1213 TASPPQDAVLVNIRPVGPVSLLLTPGYPNSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQA 1440
T + A+L+N+ P+G +LL P + QR S +A+ A R DP FR+G+NS G A++NHLHFQA
Sbjct: 127 TVAASHSAILINVSPIGYCHVLLIPQIQDCLPQRVDRESFLLAMYVAREAR-DPFFRVGYNSLGGFATINHLHFQA 201
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Match: A0A835FGV0_9POAL (Uncharacterized protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835FGV0_9POAL) HSP 1 Score: 57.4 bits (137), Expect = 2.760e-5 Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 1201 GEASTASPPQDAVLVNIRPVGPVSLLLTPGYPNSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQA 1440
G T S A+L+N+ P+G +LLTP + QR S +A+ A R + FR+G+NS G A++NHLHFQA
Sbjct: 117 GAPDTISASSSAILINVSPIGYCHVLLTPKIQDCLPQRIDQESFLIAMYVAREAR-NSFFRVGYNSLGGFATINHLHFQA 195 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12081.1768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12081.1768.1 >prot_Ecto-sp13_S_contig12081.1768.1 ID=prot_Ecto-sp13_S_contig12081.1768.1|Name=mRNA_Ecto-sp13_S_contig12081.1768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=480bp MIHHRRVAQPDGGSDKQLASPPHHSPPRGAGASTSGFAGRTRTAVTEHGIback to top mRNA from alignment at Ecto-sp13_S_contig12081:412..5168+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12081.1768.1 ID=mRNA_Ecto-sp13_S_contig12081.1768.1|Name=mRNA_Ecto-sp13_S_contig12081.1768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4757bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12081:412..5168+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12081:412..5168+ >mRNA_Ecto-sp13_S_contig12081.1768.1 ID=mRNA_Ecto-sp13_S_contig12081.1768.1|Name=mRNA_Ecto-sp13_S_contig12081.1768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1440bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12081:412..5168+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |