mRNA_Ecto-sp13_S_contig1208.1767.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1208.1767.1
Unique NamemRNA_Ecto-sp13_S_contig1208.1767.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1208.1767.1 vs. uniprot
Match: A0A6H5KYE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYE8_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.940e-66
Identity = 120/155 (77.42%), Postives = 126/155 (81.29%), Query Frame = 2 
Query:   56 PRGQQARKRRMLASSHPDGQWASGAYQAEAVPPGGEDEDEARHRSSAVANGSSENRIGSLPARGETRTGAALGVPDRAAYAEDELSDDPDGSNNSDVEVVNRGAAASGCVQAVNDRHEXXXXXXXXXXXXRITREAPRYEEDELXXXXXXDSGSL 520
            PRGQQARKRRML SSHPDGQWASGAYQAEAVPPG EDEDEARHR S+VA+GSS NR+GSLPARG T TGAA GVPDRAAYAEDELSDDPDGSN+SDVEV N+GAAASGCVQA NDRHE            RITREA RYEEDEL      +S SL
Sbjct:  161 PRGQQARKRRMLGSSHPDGQWASGAYQAEAVPPGDEDEDEARHRGSSVASGSSANRVGSLPARGGTATGAAPGVPDRAAYAEDELSDDPDGSNSSDVEVANQGAAASGCVQAANDRHEEESGAAAGSVASRITREAARYEEDELSDDDEDESDSL 315
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BLAST of mRNA_Ecto-sp13_S_contig1208.1767.1 vs. uniprot
Match: D7FV11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV11_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 2.680e-66
Identity = 124/159 (77.99%), Postives = 126/159 (79.25%), Query Frame = 2 
Query:   50 TRPRGQQARKRRMLASSHPDGQWASGAYQAEAVPPGGEDEDE--ARHRSSAVANGSSENRIGSLPARGETRTGAALGVPDRAAYAEDELSDDPDGSNNSDVEVVNRGAAASGCVQAVNDRHEXXXXXXXXXXXXRITREAPRYEEDELXXXXXXDSGSL 520
            TRPRGQQARKRRML SSHPDGQWASGAYQ EAVPPG ED     ARHR SAVAN SSENRIGSLPA GET TGAA GVPDRAAYAEDELSDDPDGSNNSDVEV N+GAAASGCVQAVNDRHE            RITREAPRYEEDEL      +S SL
Sbjct:  168 TRPRGQQARKRRMLGSSHPDGQWASGAYQGEAVPPGDEDXXXXXARHRGSAVANSSSENRIGSLPAHGETGTGAAPGVPDRAAYAEDELSDDPDGSNNSDVEVANQGAAASGCVQAVNDRHEEESGAATGSVSSRITREAPRYEEDELSDDDLDESDSL 326
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1208.1767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYE8_9PHAE1.940e-6677.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV11_ECTSI2.680e-6677.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1208contigEcto-sp13_S_contig1208:9317..12659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1197
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-13_002110.1
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462641.540522-UTR-Ecto-sp13_S_contig1208:9316..99901681462641.540522-UTR-Ecto-sp13_S_contig1208:9316..9990Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1208 9317..9990 -
1681462641.5893211-UTR-Ecto-sp13_S_contig1208:12574..126591681462641.5893211-UTR-Ecto-sp13_S_contig1208:12574..12659Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1208 12575..12659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462641.553704-CDS-Ecto-sp13_S_contig1208:9990..102281681462641.553704-CDS-Ecto-sp13_S_contig1208:9990..10228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1208 9991..10228 -
1681462641.566343-CDS-Ecto-sp13_S_contig1208:11621..117281681462641.566343-CDS-Ecto-sp13_S_contig1208:11621..11728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1208 11622..11728 -
1681462641.5763998-CDS-Ecto-sp13_S_contig1208:12481..125741681462641.5763998-CDS-Ecto-sp13_S_contig1208:12481..12574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1208 12482..12574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1208.1767.1prot_Ecto-sp13_S_contig1208.1767.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1208 9991..12574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1208.1767.1

>prot_Ecto-sp13_S_contig1208.1767.1 ID=prot_Ecto-sp13_S_contig1208.1767.1|Name=mRNA_Ecto-sp13_S_contig1208.1767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MLASSHPDGQWASGAYQAEAVPPGGEDEDEARHRSSAVANGSSENRIGSL
PARGETRTGAALGVPDRAAYAEDELSDDPDGSNNSDVEVVNRGAAASGCV
QAVNDRHEEEGGAAASSISSRITREAPRYEEDELSDDDEDDSGSL*
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mRNA from alignment at Ecto-sp13_S_contig1208:9317..12659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1208.1767.1 ID=mRNA_Ecto-sp13_S_contig1208.1767.1|Name=mRNA_Ecto-sp13_S_contig1208.1767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3343bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1208:9317..12659- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTGAACGAGGGCAAGCTGGGTGTGCCGCTACCGCCGCCGCCGCCGCCA
CGCGACCCCGCGGGCAGCAAGCGCGAAAACGACGCATGCTTGCCTCGTCG
CACCCGGACGGCCAGTGGGCAAGTGGTGCATATCAAGCGGAGGCCGTGCC
TCCTGGCGGCGAAGACGAAGACGAGGCGGTAGGTTTCTTTTGGGGGGGGG
CGGGGGCGAAAGGGTACTCATAGTCGTGCATGCCGTACAGTAGTCTTTAG
ACCACTGACCTCGCACCCCTACAAAGCCGAGACGGAGCACGGCGGGTTCT
CACCGGATCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGGAAAGG
CGAGTCGCAGGAAGGGTGCGATGCATCCTGCTATTTGGGGGGGGGCGCTT
TCCGAAGCGAGTTCGAAGGCAATTGACATTGGAGGGTACGCTTCCAAATT
TGTCTGGGCCCCTCTCACTTGCCAATTTTTTCGCTGACTTCCAAATGATT
TTCAAGTAAGATATAACGCCCCTACTCAACTGAAGTTTCATGGTGCTGCG
TTATGTACAGCGCGTTTTTGTCCCAAAGTTTTGGAAACGTTTCCAAACTG
GGGAACTTTCCGAAAAAGCGAGATCGGGGGCAACAAGTTAGGAAAATTTC
CATAAAATTTGGAAGTAATTGTCCCAGTTTTCTGGGCCCTACAAGTCCTC
ACTTCCACATAAAAAAAACAATCATTTCCTTCCAAACTGAACTTTGGAAG
TAGAAAATTAGCAATGATCAGCCATGTTTAAGACGCCCCGTTTTTCAGCT
GCAGTTACATGGTGCGGTGTTGCTTGCTTTAGTTTCATCCTGCTGCTGTG
GTTTACTTGTACTTCATGGTGCTGCGTTGTGAACGATCGAGCTTTACCCC
GATCCAAACGCTTGACGACAACGCTCCGCAGAGACATCGAAGCTCAGCAG
TCGCCAACGGCTCTTCGGAAAATCGCATCGGCAGCTTGCCGGCACGCGGA
GAGACCCGCACGGGCGCAGCACTTGGGGTACCGGACCGGTACGATACTCT
GGACTTTGAAAGGAGTGAAGCCTCTTACGATGTTTGGAATAAGTAAACAT
GTTGGATGAAGCGTGCAATCGGGGAGCTGGGTCAGGGGTACAATCGGGTC
TGCGTACCACATCCCTGTTCTATTTCCTCGGAAAACTTGTGGTTCTTATT
ATCTGAAAGCCTGGACTATCATTGTCTGCCGAAGAGGAAGCACCCGAACG
AGCCTTCTTGCCTGACGTGACTTGTTGACGTTTACCCCTCACTTCGTACC
CCTCATCCGAGGCGGTCGCTATCCCTTGGAAGAGCTCAGTTCCACGTGGT
TTTTTGTGGATGAGTCGATACCGCTAGTACAAATTTTACAACTCTCTACT
CGATCTGGAGTTACATAACCGTTCGAGAACCGCGTATTAAAAGGTACTTC
TACTGATTTCAGCACTGCCGTGGGTGGGCCGAGTTTCGTCGAAAAGTATT
TGTGCATTCATCCCAAGGCGCTGCTGTAGTTCGACAGCGACCCGGCCGTC
ACCACCTCTACCAACGTCTCGACAGCTCTACGTTTTTCGAGAAGCACAGC
AGTTTTACGTAGCACGGACTCAGGAATGATCTTACCGTCGTCGGCGATAC
CTCAGCACGGTAAATCAGACACCCAAGTAAGGTTCGCGCCCGCACTACTG
TAGAACCTCTAGAGTTTTCTAATTTTTGGCGGAGGCTAAGGTTCTCTGTT
CCTGTAGGAACATGCTCCGAAATGCCACTACAGTCGTGGCTCCGATACAA
GAGGGTACCTTTACAAGAGAGGGCTCCGATATAAGAGGGTCGAGGGCCTT
TGTCAGGTTCCCTCGTATATCAGAGCCACGACAGTATCTAGGTTTTAGTG
TCGGGGCTCTTACCCTCGTCATACACGATGATCCAGTTCTTGGATTTTGA
GTTTGTCGAGGCTGTATCAGTTTCTTCATTAGCCGCCAAGCTCTCGAGTG
CGAGCGCCAACCGTACCGGGTGCTCGTGGCGACGTCAGTCACGATGACAC
GATATGACGAGGGGTTTTACGGGCCCAGTACAGCGTACGGAGGTTTTTTC
TCTTTCTTTTTGGGTTCATTTATATATTGTTCAGTCCTTACAAAGGTGTA
ACCCTCTTTAGGCAAACAGTGGGCGTGTGGCCCCGGAAGGGAGGCGTCCG
CGTCAGGTGGACCAGTACGGATACTGGAAGGTACCGAGCCGAGACCGGAA
CGGTTTTTCAATGTGAAGACAACAGCAACAAGTGCGTGCTCGTTTGATCA
ATCTGTGACCCGGGAGGTGGCATGTGGGGAAGGCTCTTCTGACGCGGCGC
GCAGGACACGATTGGTCCGTCGGTTGTGGCTTCGTGATGCCACAAGATCT
CTCTCGCTGTTTTTTTTTGTTTGCCACACAGGGCCGCGTATGCGGAAGAC
GAGCTAAGCGACGATCCAGACGGGAGCAACAACAGCGATGTCGAAGTGGT
TAACCGAGGGGCAGCGGCCTCGGGATGCGTGCAAGCCGTCAACGACAGAC
ACGAGGAGGAGGGCGGTGCGGCCGCTAGTAGCATCTCTTCTCGAATCACA
CGCGAAGCTCCCCGTTACGAAGAAGACGAACTGAGCGACGATGACGAGGA
TGACTCAGGCTCGCTCTGATGGTCTCGAGAGGGCGGAACGAAGGCAGATA
CTACATAGATATCGGAAGTTGTACCTGACAGCAGCAGTGGGTGGTACGTG
TTTGCGTCAACCATGTGTTGCTTGCCTCAAGTTTAGCTGCAGTGGCCGAT
TCGCTGTGAAGAACTTTATGGTGGAACAGACAAGGCGGAACAAACGCAGT
CAGGTGTCAGATGTACCTGGTAGCAGTGTGTATGTATGTTTTTGCGTCGA
CCATGTGTTCGTCTGCCAAGTGTAGCTGCGATGGGTTTCTTTGGAGACAA
GCAACTCTACGAGGGTTCTGAAGTATTATTCTCCTGCTGGCGCATGGCTT
CCACTGCAGGGTTCAGCGTACGCCCACTGCAGAAGTGCGGATGTCGCATC
CCTGGACTGCTTACTAGCAACGCCGTGCGTTTCGTTAGCACCAAATTTCA
GAGTACTGTACCGTTAGGATCGGTTTCGGGACCTTTGCTCACCATAATCG
TGTACGATATACCCATGTGTTTTCTGTAGCTGCGAGTAGTTCCAATGCCG
CGAACTAGCTTCTGCTTTGCTGGACTAATTTTACGCGAGTTTTGTAGATA
AAAGAGTGCTTTCGTTTTACCTTTTGTTGCGCCTGCGTGATCGAAAAGAT
AAAGAGGGAGGAACGGACCGGCATCATAGCGTTACTGATGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1208:9317..12659-

>mRNA_Ecto-sp13_S_contig1208.1767.1 ID=mRNA_Ecto-sp13_S_contig1208.1767.1|Name=mRNA_Ecto-sp13_S_contig1208.1767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1208:9317..12659- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGCCTCGTCGCACCCGGACGGCCAGTGGGCAAGTGGTGCATATCA
AGCGGAGGCCGTGCCTCCTGGCGGCGAAGACGAAGACGAGGCGAGACATC
GAAGCTCAGCAGTCGCCAACGGCTCTTCGGAAAATCGCATCGGCAGCTTG
CCGGCACGCGGAGAGACCCGCACGGGCGCAGCACTTGGGGTACCGGACCG
GGCCGCGTATGCGGAAGACGAGCTAAGCGACGATCCAGACGGGAGCAACA
ACAGCGATGTCGAAGTGGTTAACCGAGGGGCAGCGGCCTCGGGATGCGTG
CAAGCCGTCAACGACAGACACGAGGAGGAGGGCGGTGCGGCCGCTAGTAG
CATCTCTTCTCGAATCACACGCGAAGCTCCCCGTTACGAAGAAGACGAAC
TGAGCGACGATGACGAGGATGACTCAGGCTCGCTCTGA
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