mRNA_Ecto-sp13_S_contig12078.1764.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12078.1764.1
Unique NamemRNA_Ecto-sp13_S_contig12078.1764.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12078.1764.1 vs. uniprot
Match: A0A6H5K7N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N9_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 4.170e-56
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 MSALPVNQNYPGEAPPPYYQQQAAVPGQDMARCKGCGQQFVRRPGENPASAQWHRCENCNKRQTRDMLLVNATCGASSLCSIQ 249
            MSALPVN+NYPGEAPPPYYQQQAAVPGQDMARCKGCGQQFVR+PGENPASAQWHRCENCNKRQTRDMLLVNATCGASSLCSIQ
Sbjct:    1 MSALPVNENYPGEAPPPYYQQQAAVPGQDMARCKGCGQQFVRKPGENPASAQWHRCENCNKRQTRDMLLVNATCGASSLCSIQ 83
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BLAST of mRNA_Ecto-sp13_S_contig12078.1764.1 vs. uniprot
Match: A0A8J5X8X5_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8X5_DIALT)

HSP 1 Score: 52.0 bits (123), Expect = 1.900e-6
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:   97 CKGCGQQFVRRPGENPASAQWHRCENC 177
            C+GCG+QFVRRPG  P +AQW+RCE C
Sbjct:   99 CRGCGRQFVRRPGVRPNTAQWYRCEEC 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12078.1764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7N9_9PHAE4.170e-5697.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J5X8X5_DIALT1.900e-670.37Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12078contigEcto-sp13_S_contig12078:1145..3840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_006350.1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462641.2809224-CDS-Ecto-sp13_S_contig12078:1144..12631681462641.2809224-CDS-Ecto-sp13_S_contig12078:1144..1263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12078 1145..1263 -
1681462641.2900999-CDS-Ecto-sp13_S_contig12078:1822..18501681462641.2900999-CDS-Ecto-sp13_S_contig12078:1822..1850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12078 1823..1850 -
1681462641.2981575-CDS-Ecto-sp13_S_contig12078:3735..38401681462641.2981575-CDS-Ecto-sp13_S_contig12078:3735..3840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12078 3736..3840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12078.1764.1prot_Ecto-sp13_S_contig12078.1764.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12078 1145..3840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12078.1764.1

>prot_Ecto-sp13_S_contig12078.1764.1 ID=prot_Ecto-sp13_S_contig12078.1764.1|Name=mRNA_Ecto-sp13_S_contig12078.1764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MSALPVNQNYPGEAPPPYYQQQAAVPGQDMARCKGCGQQFVRRPGENPAS
AQWHRCENCNKRQTRDMLLVNATCGASSLCSIQ*
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mRNA from alignment at Ecto-sp13_S_contig12078:1145..3840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12078.1764.1 ID=mRNA_Ecto-sp13_S_contig12078.1764.1|Name=mRNA_Ecto-sp13_S_contig12078.1764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12078:1145..3840- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGCTCTTCCAGTTAACCAGAACTATCCTGGCGAAGCGCCTCCGCC
CTATTACCAGCAGCAAGCGGCCGTACCCGGACAAGACATGGCACGCTGCA
AGGGTGTAAGTCAACGCTCTCCTTTTATGTATGTACCCTGCGTGTCTCAT
ACATTTGTACCCTGCGTGTCTCATACATGGCAGAAACCGCCTGTCTGCAG
CAGGGCCTTTTATAGTGCCGGTCGAATAGTCCCGGGTCCGGTATAGTGCC
GGTGTTTCGGCTCGCATACCGTACACTGGAATACCCAGCCGTTCTGTTCT
TTGAATAGCGCTGGTGTCCGGTATAATGCGGTAAAACCTCTGGATACATA
CCAGCGCCACACATGGCCCACTACTCCTGTACTTCGAAATACATATGCAT
ACATAGGGTGCAAGATTTGGATTGGATGTGTTTGGTGCTTCGGCACATCC
TCTCTGCCGGCATCAACTCGTCTCTCGCGCTTCCTTCAGATGGCCACGCA
GGAGGCTTGCTTGGTACTTATGCTCGAAGCTCGCGAGGTACCCGTGGCGC
GTGATATTAATAGTGTCCTGCTTTCCTACAATTAGACTAAATGAGGTTGG
GGTACTGGCTCCATTTCCCGAAGACAACGCCCGGTGAACCCCTACTGACA
ACCATTATCAGCGGTAGAAAGTAACACTCTGCACGCTCGTTTTGAACAGG
TAGAACCTACCAACCAACGAATACCTTGCTCTCTGATGAACCTAAATTGA
TACAACCCGGCTGTGCAGCCACGATGCTACGCACCTTGCTTTTTCGGAGC
TTGCACCGTCGCTCTGCATGGTGCATCGGGTTCAAAATCAAGTCAGAGTC
CTTCTTGGAGTTTGCAGTCAACTGAGAATTGCCTCTTGAGCCGTTCCATA
TTCATTCGCTAATTCCACCATTGACTCAACGTAAATAGCTATATCATTCG
CAACCTGTAAGAGGACCTTTCTCAGCTACACTTCGTAGCGGGCACATCGC
ATGCACCGACGAGTGATTTGTTTTTGGTTTCTCGGCGGGGCACTGATCTA
CGAGATCTCCGAGATCTCCAGGATTTACGCGGACTTTAGATATGGACATG
ATGGTCACGACGCGCGCCGCTCTCCTTGCCTCGCCCATGTCTCCCTCTTG
TTAAACCCGTTGACCTTGTGAAAGACAAGGAACTTGAGTCTGTCACATTG
TGTGCACAAGATCTTCGCATGAGCCTTCAAGCGCGAAAACAAAGTACGCG
CGCGCCGACACCGCAAACAACATGGACAGCAGTGCATCGTTAGTAACGTT
ACTCCTGCTGCTTTGGGAGCGTGCGCATTTGCTTTGAACGTGCTTGGCGT
TTCTTCATAATTTTCCCAGTCGGTGTTTGGGCTACATAGATGCCGGACAC
ACTAAGACGAGCACTCCTTCAAAATTGCAGGCGACAAAGATTTGCCGGTA
CCTCTACCGCAATGTTGGATTTTATTAAATACGATAGATCTTATTTGGGC
ATGATGGAGCGTACAGTTTTGTGCGCGCGCCATTCCTGATTGTTTCTAGC
TTCATTCGGATTGATTGTCGTACACAGAGAGAGAGAGAGAGTGAGAGGTG
AATGGAACATTCTAGCCGCAGGGAGGGAAAGATCGTCTTCTCTTTCTCTT
CTCTTCTCTGCGTTTTTTCATTTTTGTCTCTGTATATTTACATATGTGCT
CTCCCTCGACGTCATGTGAACCGGCGGAGCTCAAAGACTGGCTTGCACAT
GCATCTCGGGTCATGCCTGGCGGCTCCGCAATGCTAGGTTTGACCGCCCT
GACTTCAAAAATATAGCGTTGTTTGGTAATGGTGCAGGTCATGTTTGCTG
ATGTCTTGTACTCCCTCCCTTCCTCCCTCCCCCCCTCCCTCTCTCCTTCT
TCCATCACGTGTGCTTCCTTGGCGTGTTTTGTTGCTTGCATGTTTTGGCG
CCGATCATCTCTACCTCTTCTACTTCTACGGGGGATGCAGTGCGGACAGC
AATTCGTTCGCAGACCAGGTTGGTTGGGTTGACTCGAAAGCAACCGACTG
GCTGGCCGACTGGAACATAAATCTGAACACAGCAGTGCCACCGACTTGCA
GTAACTACTGCAAGAACGATGTTTGACGAAGTGCTGTTCAATTAATCCCC
TCACGCCTTTCTCAACGGTTATTCGTCTTCTCTTGCCTCTATTGGCCAAG
AATCACATTTTTTTTCGGAACTCGTGCTACCTTAAATCAGTTTTTGTGCG
GAATATGGCAGACTAGCTGTTGATTTGTTTTCTGGCAGGTGCCTACAGTT
AGTCCTTGGGATTGTGGGCACTGCAGAGCTACTGTAGACCCATGTCTTGT
CTCGCCGCCGTTATTGTTGTTTGTTCATCACTTTAAACCAGCGCTAGCTG
TCCCTGCATTTCTGCCGGTTAGAGGCTCCAATCCGTGGCCACAAGACGCT
GGTGTCTTCCATGTACTTCAAGTAGTACCCAACGCGTTTCTTTCTTTTGG
TCTGTCGTATCCGTGTCCGTGCTGGCCTGACCTGGCCTGGCCACCCGCCT
GCACACTATATTACTGTACGCACACAGGAGAAAACCCCGCGTCTGCCCAG
TGGCATCGGTGTGAGAACTGCAACAAGCGACAGACGCGGGACATGCTCCT
CGTCAATGCTACGTGCGGAGCGTCGTCACTCTGCAGCATCCAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12078:1145..3840-

>mRNA_Ecto-sp13_S_contig12078.1764.1 ID=mRNA_Ecto-sp13_S_contig12078.1764.1|Name=mRNA_Ecto-sp13_S_contig12078.1764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12078:1145..3840- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGCTCTTCCAGTTAACCAGAACTATCCTGGCGAAGCGCCTCCGCC
CTATTACCAGCAGCAAGCGGCCGTACCCGGACAAGACATGGCACGCTGCA
AGGGTTGCGGACAGCAATTCGTTCGCAGACCAGGAGAAAACCCCGCGTCT
GCCCAGTGGCATCGGTGTGAGAACTGCAACAAGCGACAGACGCGGGACAT
GCTCCTCGTCAATGCTACGTGCGGAGCGTCGTCACTCTGCAGCATCCAAT
GA
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