mRNA_Ecto-sp13_S_contig1202.1729.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1202.1729.1
Unique NamemRNA_Ecto-sp13_S_contig1202.1729.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Match: D7FWN8_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWN8_ECTSI)

HSP 1 Score: 559 bits (1441), Expect = 5.700e-196
Identity = 286/301 (95.02%), Postives = 293/301 (97.34%), Query Frame = 1
Query:    1 MLGLALAGVLAIICGRADGFASPIKISRRWPSSTSRLPAVESS-TAGRQTEDLPQALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKTDDERSLLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEASSSVTLATLGAILRERASAASS 900
            MLGLALAGVLAIICG+ADGFASPIK+S RW  STS L AVESS TAG QTEDLPQALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKT DERS+LVKELHLLKTALFNQAVVDGEIPLRTGVIRL+DEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLER+QIFAGDIVEKKKPNPDIYDLAK+TMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEAS+SVTLATLGAILRERASAASS
Sbjct:    1 MLGLALAGVLAIICGKADGFASPIKMSHRWSGSTSPLEAVESSSTAGGQTEDLPQALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKTADERSVLVKELHLLKTALFNQAVVDGEIPLRTGVIRLVDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERMQIFAGDIVEKKKPNPDIYDLAKDTMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEASTSVTLATLGAILRERASAASS 301          
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Match: A0A835Z3K7_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K7_9STRA)

HSP 1 Score: 331 bits (849), Expect = 7.440e-107
Identity = 177/287 (61.67%), Postives = 208/287 (72.47%), Query Frame = 1
Query:   13 ALAGVLAIICGRADGFASPIKISRRWPSSTSRLPAVESSTAGRQTEDLPQALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKTDDERSLLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEASSSVTLATLGAIL 873
            ALA VLA+I G          +S   PS+T                 LPQALIFDCDGVLADTERDGHRPAFN AFK K +DC W V+LYGKLL VGGGKERMTAHWD+VGWP       ++  LV+ELHLLKT LFN+A+V G+IPLR GV+RL+DEAI ++VPLAVCSTSN++AV+NLV TLMG+ER ER +IFAGD+V  KKP PDIY+LA E + L P RV+V+EDS IGL AAK AGM CLVTKSSYTG E+FS AD+V E L +DG+    V L  LG I+
Sbjct:    8 ALAAVLAVIAG----------VSAFVPSATR----------------LPQALIFDCDGVLADTERDGHRPAFNEAFKAKGIDCVWDVDLYGKLLEVGGGKERMTAHWDKVGWPLGITEKADKQALVQELHLLKTDLFNEAIVAGKIPLRPGVLRLVDEAIEQEVPLAVCSTSNERAVSNLVLTLMGRERYERFRIFAGDVVRAKKPQPDIYNLAAEALRLSPERVIVVEDSGIGLRAAKGAGMPCLVTKSSYTGGENFSLADEVVESL-DDGD----VDLQVLGNIV 263          
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Match: A0A7S2FPW0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FPW0_9STRA)

HSP 1 Score: 331 bits (849), Expect = 1.120e-106
Identity = 161/221 (72.85%), Postives = 186/221 (84.16%), Query Frame = 1
Query:  163 ALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKTDDERSLLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGED 825
            A++FDCDGVLADTERDGHR AFN+AFK  NLD EWSVELYG+LLSVGGGKERMTAHW++VGWP   ++D+ R  LVK LHL KT LFN+ + +G IPLR GV+R++DEAI   VPL VCSTSNDKAVTNLV TLMG ER  +IQIFAGD+VEKKKP+PD+Y LAKETMGLD    +VIEDSHIGL AAK AGMNCLVTKSSYT +EDFS AD++ EELG++
Sbjct:   53 AILFDCDGVLADTERDGHRVAFNTAFKENNLDTEWSVELYGELLSVGGGKERMTAHWNKVGWPAEYESDESRRELVKSLHLRKTDLFNEMICEGIIPLRPGVLRVVDEAISAGVPLGVCSTSNDKAVTNLVLTLMGPERRSKIQIFAGDVVEKKKPSPDVYLLAKETMGLDAGSTMVIEDSHIGLQAAKGAGMNCLVTKSSYTANEDFSVADKIVEELGDE 273          
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Match: W7UBX2_9STRA (Protein cbby n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBX2_9STRA)

HSP 1 Score: 318 bits (816), Expect = 1.110e-101
Identity = 159/236 (67.37%), Postives = 184/236 (77.97%), Query Frame = 1
Query:  163 ALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKTDDERSLLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEASSSVTLATLGAI 870
            AL+FDCDGVLADTERDGHRP FN AFK K +DC W V LYG LL VGGGKERMTAHW++VGWP    +D +R  LV+ELH+LKT LF   + +G++PLR GV+R++D AI   VPL VCSTSNDKAV  L++ LMG+ER+   QIFAGD+V KKKP PDIY LAKE MGLD  R VVIEDSHIGLTAAKAAGM CLVTKSSYT +EDF AAD+V EELG+D EA   V+   L A+
Sbjct:   53 ALLFDCDGVLADTERDGHRPCFNLAFKEKGIDCTWDVVLYGNLLEVGGGKERMTAHWNKVGWPSGYDSDAKRQDLVRELHMLKTNLFMNYIEEGKLPLRPGVLRVVDAAIAAGVPLGVCSTSNDKAVRTLIRVLMGEERMSHFQIFAGDVVPKKKPWPDIYLLAKEQMGLDARRTVVIEDSHIGLTAAKAAGMKCLVTKSSYTANEDFRAADRVVEELGKD-EAGGGVSFKDLEAL 287          
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Match: A0A7S2V8N0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8N0_9STRA)

HSP 1 Score: 309 bits (791), Expect = 5.970e-98
Identity = 162/288 (56.25%), Postives = 206/288 (71.53%), Query Frame = 1
Query:   16 LAGVLAIICGRADGFASPIKISRRWPSSTSRLPAVESSTAGRQTEDLPQALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKTDDERS--LLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEASSSVTLATLGAIL 873
            L+ VL  IC ++  F +    ++ +P     L A+++    +    +P+A++FDCDGVLADTERDGHRPAFN+ F+ + LD +W+ ELYG+LL VGGGKERMTAHW+EVGWP      D+ S   LVKELHL KT  FN+ +  G IPLR GV+RL+DEAI   V LAVCSTSN+KAV NLV TLMG+ER  + Q F GD+V+KKKP PD+Y +AK++MGLD ++ ++IEDS IGL AAKA+GM CLVTKSSYT +EDFS AD V   L +DG    +VTL  LG IL
Sbjct:    7 LSTVLLTICTQSAAFVA----TKTFPHGLKPLHAIDNKKVLQMA--VPEAILFDCDGVLADTERDGHRPAFNAVFEERRLDTDWTPELYGRLLEVGGGKERMTAHWNEVGWPSSVSLHDDESKATLVKELHLAKTDEFNKMIKSGAIPLREGVLRLVDEAISNNVSLAVCSTSNEKAVKNLVLTLMGEERYSKFQFFCGDMVKKKKPAPDVYLMAKDSMGLDASKTIIIEDSGIGLQAAKASGMKCLVTKSSYTENEDFSKADCVVSSL-DDG----NVTLEKLGNIL 283          
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Match: A0A7S1ZBJ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBJ4_TRICV)

HSP 1 Score: 303 bits (776), Expect = 8.590e-96
Identity = 149/240 (62.08%), Postives = 183/240 (76.25%), Query Frame = 1
Query:  157 PQALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKTDDE-RSLLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEASSSVTLATLGAIL 873
            P+A++FDCDGVLADTERDGHRPAFN AF    +D EW VE YG LL VGGGKERMTAHW+EVGWP     D+E R   VKELHL KT +F   + +G IPLR GV+RL+DEAI   V LA CSTSNDKAV NL+ TLMG +R  + Q+FAGD+V+ KKP PD+Y++A E MGLD ++ V++ED+ IGL AAKAAG+ CLVTKS+Y   EDF+ AD + +ELG+D E  + VTLATLG++L
Sbjct:   45 PEAILFDCDGVLADTERDGHRPAFNRAFAENQIDEEWGVERYGVLLEVGGGKERMTAHWNEVGWPSAMPDDEEGRQAKVKELHLQKTGIFMDMINEGAIPLRPGVLRLVDEAIENGVRLACCSTSNDKAVKNLIATLMGPDRAAKFQVFAGDMVKAKKPAPDVYNMAVEEMGLDKSKCVIVEDTDIGLGAAKAAGIKCLVTKSAYAEKEDFTGADLIVDELGDDPE--TGVTLATLGSLL 282          
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Match: A0A7S0GHW2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHW2_9STRA)

HSP 1 Score: 301 bits (770), Expect = 1.320e-94
Identity = 154/267 (57.68%), Postives = 190/267 (71.16%), Query Frame = 1
Query:   79 SRRWPSSTSRLPAVESSTAGRQTEDLP--QALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKTDDERSLLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEASSSVTLATLGAIL 873
            SRR   + SR        A  +T D P  QA++FDCDGVLADTERDGHR AFN  F    L+ EW  ELYGKLL  GGGKERMTAHW+EVGWP     D+ R   VKE HL KT +F + +  G+IPLR GV+R++DEAI   V LA CSTSN+KAV+NL++TLMG+ER  + QIFAGD+V++KKP PD+Y++A + MGLD  R V++ED++IGL AA AA + C VTKSSYTGDEDF+ AD V EELG+D E    VTL  L ++L
Sbjct:   39 SRRAQKNASREKWAAERGASSETSDKPSLQAILFDCDGVLADTERDGHRLAFNQIFSEDELNTEWDAELYGKLLETGGGKERMTAHWNEVGWPTQIPDDENRQSKVKEYHLRKTDVFMELIDAGKIPLRAGVLRIVDEAIANDVQLACCSTSNEKAVSNLIQTLMGEERFAKFQIFAGDMVKQKKPAPDVYNMAVDAMGLDKERCVIVEDTNIGLRAAMAAEIACCVTKSSYTGDEDFTGADLVVEELGDDREGV--VTLENLSSLL 303          
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Match: B5YPA5_THAPS (Possibly a phosphatase from the CbbY protein family n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YPA5_THAPS)

HSP 1 Score: 299 bits (766), Expect = 1.990e-94
Identity = 154/249 (61.85%), Postives = 194/249 (77.91%), Query Frame = 1
Query:  127 STAGRQTEDLPQALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKTDDERSLLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEASSSVTLATLGAIL 873
            ST+ R T +L +A++FDCDGVLADTERDGHR AFN AF++ ++D  WS + YGKLL VGGGKERMTAHW+EVGWPD A  +D R+  V  LHL KT +F   + +G IPLR GV+RL+DEAI   V LAVCSTSN+KAV+NLV TLMG ER  + QIFAGD+V+KKKP PD+Y +A +TMGLD +  V+IEDSHIG+ AA A+G++CLVTKSSYT  EDF+ A ++ EELG+D  A++ VTL TL ++L
Sbjct:   29 STSLRATSNL-EAILFDCDGVLADTERDGHRLAFNRAFQLNSIDESWSEQRYGKLLEVGGGKERMTAHWNEVGWPD-AIPEDGRAEKVLGLHLQKTDIFMDLIDEGAIPLRPGVLRLVDEAIENGVRLAVCSTSNEKAVSNLVSTLMGAERASKFQIFAGDMVKKKKPAPDVYLMAVDTMGLDKSGCVIIEDSHIGVGAAVASGISCLVTKSSYTAGEDFTGAKKIVEELGDD--AATGVTLDTLASLL 273          
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Match: A0A6V2Q9B2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2Q9B2_9STRA)

HSP 1 Score: 297 bits (761), Expect = 1.360e-93
Identity = 156/284 (54.93%), Postives = 194/284 (68.31%), Query Frame = 1
Query:   25 VLAIICGRADGFASPIKISRRWPSSTSRLPAVESSTAGRQTEDLPQALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCA-KTDDERSLLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEASSSVTLATLGAIL 873
            +LA+    A  F  P    R            +++T         +A++FDCDGVLADTERDGHR AFN AF    +D  WS E YG LL VGGGKERMTAHW+EVGWP    ++ DER+  VK+LHL KT +F   + +G IPLR GV+RL+DEAI   V LAVCSTSNDKAV+NLV TLMG ER  + QIFAGD+V+ KKP PD+Y++A + M LD +R V++ED+HIGL+AAKAAG+ C VTKSSYTG EDF+ AD + EELG+D E    VT  TL ++L
Sbjct:    9 LLAMTVSTASAFTHPTSFVRS-----------KAATTSSSLNAALEAILFDCDGVLADTERDGHRIAFNRAFANNGIDENWSEERYGVLLEVGGGKERMTAHWNEVGWPSVMPESPDERAAQVKKLHLEKTDIFMDLIDEGVIPLRPGVLRLVDEAIEAGVRLAVCSTSNDKAVSNLVSTLMGPERAAKFQIFAGDMVKAKKPAPDVYNMAVDEMKLDKSRCVIVEDTHIGLSAAKAAGIKCCVTKSSYTGGEDFTGADLIVEELGDDKEGG--VTAETLASLL 279          
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Match: A0A7R9WSC9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSC9_9STRA)

HSP 1 Score: 297 bits (760), Expect = 6.970e-93
Identity = 145/238 (60.92%), Postives = 185/238 (77.73%), Query Frame = 1
Query:  160 QALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSVGGGKERMTAHWDEVGWPDCAKTDDERSLLVKELHLLKTALFNQAVVDGEIPLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIFAGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCLVTKSSYTGDEDFSAADQVTEELGEDGEASSSVTLATLGAIL 873
            +A+++D DGVLADTERD HRPAFN AF+  NL+ +W VE YGKLL VGGGKERMTAHW+EVGWP      D+R   VKELHL KT +F   +  G +PLR GV+R+ID+AI   + LAVCSTSN+KAV NLV+TLMG +R  + QIFAGD+V+KKKP PD+Y+LA +TMGLD ++ V++EDSHIGL AA AAG+ C+VTKSSYT  EDF+ A+++ EELG+D  A++ VTL  L ++L
Sbjct:   83 EAILWDMDGVLADTERDAHRPAFNIAFEENNLNTDWDVERYGKLLEVGGGKERMTAHWNEVGWPQGFPEGDDRPAKVKELHLRKTDIFMDMIKTGGVPLRPGVLRIIDDAIAADLRLAVCSTSNEKAVRNLVQTLMGPDRAAKFQIFAGDMVQKKKPAPDVYNLAVDTMGLDKSKCVIVEDSHIGLGAAMAAGIACIVTKSSYTAGEDFTGANKIVEELGDD--AATGVTLENLESLL 318          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1202.1729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWN8_ECTSI5.700e-19695.02Haloacid dehalogenase-like hydrolase family protei... [more]
A0A835Z3K7_9STRA7.440e-10761.67HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2FPW0_9STRA1.120e-10672.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7UBX2_9STRA1.110e-10167.37Protein cbby n=1 Tax=Nannochloropsis gaditana TaxI... [more]
A0A7S2V8N0_9STRA5.970e-9856.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1ZBJ4_TRICV8.590e-9662.08Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0GHW2_9STRA1.320e-9457.68Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B5YPA5_THAPS1.990e-9461.85Possibly a phosphatase from the CbbY protein famil... [more]
A0A6V2Q9B2_9STRA1.360e-9354.93Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7R9WSC9_9STRA6.970e-9360.92Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1202contigEcto-sp13_S_contig1202:11269..16353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score554.7
Seed ortholog evalue2.7e-155
Seed eggNOG ortholog2880.D7FWN8
Model size1761
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.pseudouridine 5'-phosphatase activity
EggNOG OGsCOG0637@1,KOG2914@2759
Ec32 ortholog descriptionhaloacid dehalogenase-like hydrolase family protein
Ec32 orthologEc-06_001350.1
Cds size903
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1202.1729.1prot_Ecto-sp13_S_contig1202.1729.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1202 11269..15495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.5175614-CDS-Ecto-sp13_S_contig1202:11268..115241681462638.5175614-CDS-Ecto-sp13_S_contig1202:11268..11524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1202 11269..11524 +
1681462638.5284681-CDS-Ecto-sp13_S_contig1202:12049..121301681462638.5284681-CDS-Ecto-sp13_S_contig1202:12049..12130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1202 12050..12130 +
1681462638.5379446-CDS-Ecto-sp13_S_contig1202:12713..128861681462638.5379446-CDS-Ecto-sp13_S_contig1202:12713..12886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1202 12714..12886 +
1681462638.5474215-CDS-Ecto-sp13_S_contig1202:13742..138891681462638.5474215-CDS-Ecto-sp13_S_contig1202:13742..13889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1202 13743..13889 +
1681462638.5577433-CDS-Ecto-sp13_S_contig1202:14430..145231681462638.5577433-CDS-Ecto-sp13_S_contig1202:14430..14523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1202 14431..14523 +
1681462638.5701783-CDS-Ecto-sp13_S_contig1202:15342..154951681462638.5701783-CDS-Ecto-sp13_S_contig1202:15342..15495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1202 15343..15495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.5815535-UTR-Ecto-sp13_S_contig1202:15495..163531681462638.5815535-UTR-Ecto-sp13_S_contig1202:15495..16353Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1202 15496..16353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1202.1729.1

>prot_Ecto-sp13_S_contig1202.1729.1 ID=prot_Ecto-sp13_S_contig1202.1729.1|Name=mRNA_Ecto-sp13_S_contig1202.1729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
MLGLALAGVLAIICGRADGFASPIKISRRWPSSTSRLPAVESSTAGRQTE
DLPQALIFDCDGVLADTERDGHRPAFNSAFKIKNLDCEWSVELYGKLLSV
GGGKERMTAHWDEVGWPDCAKTDDERSLLVKELHLLKTALFNQAVVDGEI
PLRTGVIRLIDEAIYRKVPLAVCSTSNDKAVTNLVKTLMGKERLERIQIF
AGDIVEKKKPNPDIYDLAKETMGLDPARVVVIEDSHIGLTAAKAAGMNCL
VTKSSYTGDEDFSAADQVTEELGEDGEASSSVTLATLGAILRERASAASS
*
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mRNA from alignment at Ecto-sp13_S_contig1202:11269..16353+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1202.1729.1 ID=mRNA_Ecto-sp13_S_contig1202.1729.1|Name=mRNA_Ecto-sp13_S_contig1202.1729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5085bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1202:11269..16353+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGGCCTTGCACTGGCTGGGGTTTTGGCAATCATCTGCGGTAGGGC GGATGGTTTCGCTTCTCCGATCAAGATAAGCCGCAGATGGCCTTCTTCAA CCTCACGGTTACCAGCAGTTGAATCATCGACTGCTGGCCGACAGACCGAA GACCTGCCGCAGGCGTTGATCTTTGACTGCGACGGCGTACTAGCGGATAC GGAGCGCGATGGTCACCGTCCAGCTTTCAACTCCGCGTTCAAGATCAAGA ACCTAGGTGTGTGTGAGCGCGTGAGGATCTAAAATGATGTAGCGTATTGA CTGTACGAATACGCCATCTGTAGGATTCTGCGCCCACTGCAAACAACATG AATGCTCGTCAAATCATTTGCTGTGCTCGTTCCCCGTACGCTGAACCTGC AGTTGTGCGCTTGCAGGACGAGACGTAGGATATTTCTTGTCCTACGATGG TTCTGTGACCGATACTTCCTCTCCACTCTCTGGTAGGTGCACAAGCAGCG AAAGCCGGACTTTGTACATGTTGTATAGGCAGAGCCAGGGTTATTGGAAG TCTAAAGTAGGCGGTCCATGCACCCAACGGCAGCCCTCTCGCCGTGTACT TGCTCTCCTGTGGTGTGCTTGCTTTGAGGTCGACCCGACCCTTCATTGGT CCTACTGGACCTTCGGACGCCGCTATTGCATGCAGCTCAAAATTATTCAT GGTCGTGGATGGTCTCCGTTTGAACCCCTCCCTCCTCCTCCGCTACACCT TGTTTTTACATCATGTTGTGACCAACCCCAGACTGCGAGTGGAGCGTTGA GCTATACGGAAAGCTGCTGTCTGTTGGCGGTGGGAAGGAGCGAATGACGG CGCACTGGGATGGTAAGTCGACAGTCGACGACACATTGACATGCTGTGAC TCTAGGAACCCTGCTCTGGTCGCTGTCCTGTTGACCATGGCGTCGGTGAC CTGCTGACTACTCCTGGGCGGGATGACCCACATCCCGTGCAATCCCGAAC AGTATCATCCCGGGAAGGTGTACCCCCCGGTGTACTGCGTTTGGTGAAAT TGAGTCCTCGGGTATGGTGTTGGTGATATCGCTCGCTGTGGCGGCTGTTC ATCTTGTGCAGACGCAGCAAGCTGTCCATTCGTAAACTAGTTTGTCGACG GCAGTATGCATAGCTGATCAGGTATTTTCTAGGAACCGATCTTTCAAAAA GTCACAAGCTCTTAGACAACCTTAAGAGAGAATGAGAGAGAGTCGGCTGC AAAATACGTGATTCGCACGCTGCCCCAGGTCAACTACAACTATTTAGAGC CTGAACATACATAGCACCACGTTTTTAGGCCTCATCCTGATTCGATTTTC TTCCACGGACGAACTCCCTATAGCACCACAACACCACAATCAAGCTCCCA CCCGATTTGATTCTCTTCCGCTGACGAACGTTAACCTTCCGCCAGAGGTG GGCTGGCCTGATTGCGCCAAGACAGACGACGAGCGATCGCTGCTCGTCAA AGAGTTGCACCTCCTCAAGACGGCGTTGTTCAACCAGGCCGTGGTGGATG GGGAGATACCTCTCAGGACGGGAGTTATCCGGTTGATCGACGAGGCCATC TACCGGAAGGTCCCCCTGGTAGGTCCCACTGCACGCGTGTCTTTTTCTTA ACCCACTTTTTTCTAGGGGTTGTATCTACAATCTGCAGCAGTACTACAGC AAGAGGCGGAGAGATGGCACTCCCTTAGACCCAATTTTAAAGCTCGATTG CTCCTCTACCAAGCCTGTGGCAACACCAAACATGGTGGATTTGGAACCAT CGCGTCGAGCGCTTGCCGTCGACTCTTTTCCGCACCCCCTTGATTGTGGA GTAATCGAATCGACCTTTGGAAATCGGTCTAGCGGGGGTGCCATCTCTCC GCCTCTTGCGGTTTATGATCGCGTCCCCTCGGGGTTGGACACCCTTGGAG GCAACGGTAGCGTTGGTAGGAGAGCGAGCAAAAGGAAGCGGGACAGGCCA CACATCAGCAGTGGCTGAGATGGTTGAGGTGGTAACTAAGGCGTGGCTCT TGGGCTGCGGGGTTCGAATCTCTTCGGAATGTAAAACTTGCGAGTTACCT ACAGCTCTATACTTCCTGCCCCTTTTGGGGCGACGACGAGCGAGTTAATG TTTGTCGCCATCCAGTTTTCCCCAACCTTTCCCATCTCCGCCATGGTTTG CCAAAGTGGCATTCTATGATACTCATCAGAAACATCATCGGCTGCGGCCT GTCTTGAATACAGATAGCGCCCACACCATAAGAACATATGTTGTACTTTT GGGCAAGGCTGGGGTTCTTGGTTCCTCTTGCGGCGTACAAACGTCCTCCA TTTTCGTTCTGTGTAGGGGTTCTCAACCGAGCTTAGTAATTGTGCTCGAT AAATTGTTGAGCATGAAATTCTTAACTTCAAAGCACCTGAGTGCGGGCGC TACATCTGTACATGATGACCTCAGGCAGTGTGCTCGACTTCGAACGACAA AGCTGTGACAAATCTGGTCAAGACCCTGATGGGGAAGGAGCGCCTGGAGC GGATACAAATATTCGCCGGCGACATCGTGGAAAAAAAGAAACCCAACCCG GATATTTACGACCTCGCCAAGGTTTGTGCAGAGATCAGCCGGGGAACACT TTGTTTGCCTTTTCGATACTGTTGTCAGAAGTGTGTATAATGGTTTGGTT GCTCCATGTCGCAACGTGACGCTACATTGATATGCCGCCGACGATATTCG TGGTGCTTGTTTACCCTTTTCCGAAACTGTTGTCAGTAAATGATAGATTT GATCTATGTCGTAAAGCGAAACTGTTGATTTCGCCACGGATGAAATTCGT GGGCGGCGCGCAACACCTCCGCAGCTGACAGCCAGCAACTGCAGCGGGGA TTATCACTCGTAACGTACGCCAAAGAGGACCCTCCTTCGCGAAAAATTAA GTGAATGAGGCAATAGAACAGGGAGGGTGTACGCAGACCCTATCCCTAAC CCTATCCCTATCCCTATCCCTAAAACCCTAACCCACTTTCCCCGATTAGA TGCTTTATCCAATATGTTTGCTTAGTAAAAGAAACCTTCAGTGGCTAAGA AAAGGCAGCCGTCATCGCCGCCGCCGCCTTCCGTGATTCACTGGTTTGTT TGACGCGGGCAGGAAACGATGGGGCTAGACCCTGCTCGCGTGGTGGTCAT CGAGGACTCGCACATCGGACTGACTGCGGCGAAGGCTGCCGGGATGAACT GCCTGGTGAGAAATGCGGAAGCGTGGAACGAACACCCGCCGGCTCTCGGT AATGTCCCTCCCGTGGAACATGCTGTCCCACATTTTGTATCGTGGAACTT GCTGTCCCATAATTTGCACCGTGTAGCAGTGAGTAAAGGTTGGGAGGGCT TGGCGGTGGAGTCAAGGCGTTCCTCGTTCTGCCAATGATCGATTTTCCTT CTCAAGACGACCTGGTTTTTTTACGGCTTCTTCTAACGTCGCAAAGAGGT AAAACACAGTGTCCATGCCCATCGTCGGTGAAGTCTGTGGGGTTTGCTCC ACATGAGAAGACGACATTGTAGGGGAATTGGGGTATATTTGTGTTGAGAC AGAAAAAGAGCACCAACAATTTTCGGAGAAAAATCACGAGAGAGACCATT CACTCCAATAGAACCTACTAGCGCGACACTATTCCCATTCTGCGTCTGGG CTATAGGTCCCTTTTGAAACAATCGTCGAATGCCTCGCGAGTTGTCCGTG CCCTCTGAATCCAGAACGGAAACCTGACCTCTGGATAAGACGCATGTATG ACCTCGGTTGCCGCAATCTGTTTTTATGCCACATGCTTGGTCAAGGCCCC CCGCACTTCCCGTTCTCTGCCTGATCGACTGAATGCTGACGTGTACATTT CCATATATATCAAAGAATGCAACAAGCACGAGTATGAACTCTCCATAGTT TCATAGAATCCAGTTGAGCATGAGAACTCAATCCCGCCCCAGGACGCGTG GTCGATGGTCCAACAGCTAAGGCATGTAAAACATGGGTCCCCCCTCCCCC CTCCCGGTACTGCTTACAAACAAGGTAACGAAGAGCAGTTACACCGGGGA TGAAGACTTTTCTGCGGCAGACCAAGTGACGGAGGAACTGGGGGAGGACG GCGAAGCCAGCTCGTCTGTAACGCTAGCTACTCTGGGAGCAATCTTGAGG GAACGCGCGAGCGCGGCCTCCTCGTAAGATCGTAGAGAGCAACACCTGGG CTCTCCGAAAGGCAAAATTTTCTTTGGGCAAACGTTGTTTCTTCAGAAAC GTGCAGAATCCGTTGTTCGTAGCATAGACTTTGTGTGTGCTGCGGGCTCC TTTTCTGCGCGAGAGATGTCCCTCGAGTCCACGGCGCTGGTTTCACCGTT GCTGAAGTCTTCGGGGTTTCTTATTTTGCCTCCCCTTCGCCTACCTCTGT CGGGGTGTCCTTTTCCACACACACATCCCCCGGCGTGTCCCCAGCAAAGG TTGCGGTATACCCGAACAGCAGTCCTTGGTGTTGGGAAGAGGTGGCATTG GTGAGTTGGGTGTACCGAGCTGCAGAGCTCCTATGGGGGGGTTGCCAGAC CGCAGCATATGTTTGCGGACACAGGATGCAGCATTTGCGCGGATCTTGTC CTTCTCCTGTTGGCTTGTTGAAAACTCTCGCGGAAATCTGCGGGCCGCCC GAGAGCGATAATAGAGCCTCCGCGAAAAAAAGTCCCACAGACCATGCGGC GGAATCAGTGGGTAAGAAGTGGTCTGCGATGAAGAGGAGCACCACATGGT AGTAGTGCAACAATTGATCCAGAGAGAATCGACCCGTAGCATAGGCCACT CAGCAACACTGTTCCCGCTTACCCCCCATAAGCTGCGAACGGCGACGGCA TTGCCAGCATAACATGGTGCGTACAGCTGCAACGCGTCGTATCGCGAAAT AGACGGGACGAGAAAAAAAGGGCGCTTTGGAGCGCTCGTGTGTGGGAGAA CCGGCGAAAAGTTTTGGTGCACTGAAGATTGTGGCTCCGTCGTTTCGCAG AAACTAATTAACAAGTGTAACCGTCAAGAAAAACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1202:11269..16353+

>mRNA_Ecto-sp13_S_contig1202.1729.1 ID=mRNA_Ecto-sp13_S_contig1202.1729.1|Name=mRNA_Ecto-sp13_S_contig1202.1729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1202:11269..16353+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGGCCTTGCACTGGCTGGGGTTTTGGCAATCATCTGCGGTAGGGC
GGATGGTTTCGCTTCTCCGATCAAGATAAGCCGCAGATGGCCTTCTTCAA
CCTCACGGTTACCAGCAGTTGAATCATCGACTGCTGGCCGACAGACCGAA
GACCTGCCGCAGGCGTTGATCTTTGACTGCGACGGCGTACTAGCGGATAC
GGAGCGCGATGGTCACCGTCCAGCTTTCAACTCCGCGTTCAAGATCAAGA
ACCTAGACTGCGAGTGGAGCGTTGAGCTATACGGAAAGCTGCTGTCTGTT
GGCGGTGGGAAGGAGCGAATGACGGCGCACTGGGATGAGGTGGGCTGGCC
TGATTGCGCCAAGACAGACGACGAGCGATCGCTGCTCGTCAAAGAGTTGC
ACCTCCTCAAGACGGCGTTGTTCAACCAGGCCGTGGTGGATGGGGAGATA
CCTCTCAGGACGGGAGTTATCCGGTTGATCGACGAGGCCATCTACCGGAA
GGTCCCCCTGGCAGTGTGCTCGACTTCGAACGACAAAGCTGTGACAAATC
TGGTCAAGACCCTGATGGGGAAGGAGCGCCTGGAGCGGATACAAATATTC
GCCGGCGACATCGTGGAAAAAAAGAAACCCAACCCGGATATTTACGACCT
CGCCAAGGAAACGATGGGGCTAGACCCTGCTCGCGTGGTGGTCATCGAGG
ACTCGCACATCGGACTGACTGCGGCGAAGGCTGCCGGGATGAACTGCCTG
GTAACGAAGAGCAGTTACACCGGGGATGAAGACTTTTCTGCGGCAGACCA
AGTGACGGAGGAACTGGGGGAGGACGGCGAAGCCAGCTCGTCTGTAACGC
TAGCTACTCTGGGAGCAATCTTGAGGGAACGCGCGAGCGCGGCCTCCTCG
TAA
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