mRNA_Ecto-sp13_S_contig1202.1727.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1202.1727.1
Unique NamemRNA_Ecto-sp13_S_contig1202.1727.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Match: A0A6H5KME1_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KME1_9PHAE)

HSP 1 Score: 1937 bits (5018), Expect = 0.000e+0
Identity = 1037/1151 (90.10%), Postives = 1060/1151 (92.09%), Query Frame = 1
Query:   28 MISAAPRSAGQATLITGLLGSGKTWSLTNQVLQAASETAXXXXXXXXXXXXXXXXXGSAGSLLAVSTQADCARLQQRIDLERPLGCTKCDVMTFPSLVRRIVDEFGPTVGSYYTAADAPVLNRNSLSVFLHRNLDALPLGKYRPLHDPGDAVRPLISLFSSLAHCGVSPEDYLRYVEALETELGTTAGGCEQQGGVSVDDDAGRGAPAGRARQRAQLEAEGWRAHVAGERDKADAYEAFVDLKRREGVADYSDQLLLARRILRESATAKAALSLRLSHVYVDDLQWYSPAMIDVLASLVAPGARITATADPQLAAMSSVGVFGAEHSAIARFKKAFPGAQELHLAGNHQSSFAIQVAMKALEPRDAPVAAKRKNTAKAAKADAPGVADFLEDTAAVERNTAXXXXXXXXXXXXXXXXXXXPGGASRDSRLTCLTFRTEGDEVKALGRRVREVIKAGVRPGDIGVAAVGGGGVADTLVAALSAEGVPVEAPPRFSAVFDNETPRMLMSFLRCLVHPSESTPLLHLLMSCPAYALPGGELTAALEGHLSRYVPLRSFLRDSHLGERGDSHPREEGHGVSTSARTVAGKLLSDIDRFAETAKKTGVREVMLEFLRYSGQLERLEEPTTKEEEQEGRAVAEFFELTARAERQAGGDRVTLVEPILRLFRRHGTGYMKPSGPHDDEAATGGEFGGSSADYGGAVRVFRPGEDWKAGENRSFHTVFIPFCSRAHLPGNLRTARLTVPGPFRGYPEPRDTGGLRAEADLARAGHENRGRATLYAALGSAGREVCLSVSARATRGKTHLSPSPFLAEILGDDAPREWKTAIETPKDQEDRLHFLVDEDAAAPGVSIDAATKVVEGGYATVAGRLKSASPSPAAVALRLSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASGGRGAGSPPTLEAVVEDFSRHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRRCAAGAGSGHNSQPRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPRLLSITDYKSNVGAKVPSRMVRDNLQLRIYALAAERLFGTTPTEIAIESIEDGRRGVAVPLAADAEIALEAISATATAVRAERFEATPSFQACTFCSFKHMCQHSVVANAAL 3480
            MISAAPRS GQATLITGLLGSG                                   SAGSLLAVS QADCARLQQRIDLE+PLGCTKCDV+TFPSLVRRIV EFGPTVGSYYT+ADAPVLNRNSLSVFLHRNLDALPLGKYRPLHDPGDAVRPLISLFSSLAHCGVSPEDYLRYVEALETE+   AGG EQQGGV+VDDDAG G PA RARQRAQLEAEGWRAHVAGERDKADAYEAFVDLKRREGVADYSDQLLLARRILRESATAKAALSLRLSHVYVDDLQWYSPAMID+LASLVAPGARITATADP LAAMSSVGVFGAEH+AIARFKKAFPGAQEL+LAGNHQSS  IQVAMKALEPRDAPV AKRKNTAKAAKADAPGVADFLEDT  VER   XXXXXXXXX          PG ASRDSRLTCLTF+TEGDEVKALGRRVREVIKAGV PGDIGVAAVGGGGVADTLVAALSA GVPVEAPPRFSAVFDNETPRMLMSFLRCLVHPSESTPLLHLLMSCPAYALPGGELTAALEGHLSRYVPLRSFLRDS+LGE GDS+PREEGHGVSTSARTVAGKLLSD+DRFAETAK+TGVREVMLEFLRYSGQLERLEEPTTKEEEQEGRAV EFFELTARAE+QAGGDRVTLVEPILRLFRRHGTGYMKPSGPHDDEAATGGEFGGSSA+Y GAVRVFRPGEDWKAGENRSFHTVFIPFCSRA LPGNLRTARLTVPGPFRGYPEPRDT  LRAEADLARAGHENRGRATLYAALGSAGREVCLSVSARATRGKTHLSPSPFLAEILGDDAPREWKTAIE PKDQEDRLHFL DE AAAPG S DAA  VVEGGYAT AGRL+SASPSPAA ALRLSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASG RGAG PPTLEAVV+DF+RHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGR CAAGAGSGHNSQ RQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHP LLSITDYKSNVGAKVPSRMVR+NLQLRIYALAAERLF T PTEIAIESIEDGRRGVAVPLAADAEIALE ISATATAVRAERF+ATPSFQACTFC FKHMC+HS+VA+AAL
Sbjct:    1 MISAAPRSTGQATLITGLLGSG-----------------------------------SAGSLLAVSPQADCARLQQRIDLEQPLGCTKCDVVTFPSLVRRIVHEFGPTVGSYYTSADAPVLNRNSLSVFLHRNLDALPLGKYRPLHDPGDAVRPLISLFSSLAHCGVSPEDYLRYVEALETEI---AGGGEQQGGVAVDDDAGSGTPARRARQRAQLEAEGWRAHVAGERDKADAYEAFVDLKRREGVADYSDQLLLARRILRESATAKAALSLRLSHVYVDDLQWYSPAMIDILASLVAPGARITATADPHLAAMSSVGVFGAEHTAIARFKKAFPGAQELYLAGNHQSSSTIQVAMKALEPRDAPVVAKRKNTAKAAKADAPGVADFLEDTTTVERXXXXXXXXXXXXTDERPALATTPGAASRDSRLTCLTFQTEGDEVKALGRRVREVIKAGVYPGDIGVAAVGGGGVADTLVAALSAAGVPVEAPPRFSAVFDNETPRMLMSFLRCLVHPSESTPLLHLLMSCPAYALPGGELTAALEGHLSRYVPLRSFLRDSYLGEGGDSYPREEGHGVSTSARTVAGKLLSDVDRFAETAKRTGVREVMLEFLRYSGQLERLEEPTTKEEEQEGRAVVEFFELTARAEQQAGGDRVTLVEPILRLFRRHGTGYMKPSGPHDDEAATGGEFGGSSAEYSGAVRVFRPGEDWKAGENRSFHTVFIPFCSRARLPGNLRTARLTVPGPFRGYPEPRDTESLRAEADLARAGHENRGRATLYAALGSAGREVCLSVSARATRGKTHLSPSPFLAEILGDDAPREWKTAIEAPKDQEDRLHFLADEGAAAPGGSRDAAPNVVEGGYATAAGRLESASPSPAAAALRLSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASGSRGAGPPPTLEAVVQDFNRHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRGCAAGAGSGHNSQQRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPGLLSITDYKSNVGAKVPSRMVRNNLQLRIYALAAERLFETPPTEIAIESIEDGRRGVAVPLAADAEIALETISATATAVRAERFDATPSFQACTFCGFKHMCRHSIVASAAL 1113          
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Match: D7FWN6_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN6_ECTSI)

HSP 1 Score: 1776 bits (4599), Expect = 0.000e+0
Identity = 937/1052 (89.07%), Postives = 970/1052 (92.21%), Query Frame = 1
Query:  325 RIVDEFGPTVGSYYTAADAPVLNRNSLSVFLHRNLDALPLGKYRPLHDPGDAVRPLISLFSSLAHCGVSPEDYLRYVEALETELGTTAGGCEQQGGVSVDDDAGRGAPAGRARQRAQLEAEGWRAHVAGERDKADAYEAFVDLKRREGVADYSDQLLLARRILRESATAKAALSLRLSHVYVDDLQWYSPAMIDVLASLVAPGARITATADPQLAAMSSVGVFGAEHSAIARFKKAFPGAQELHLAGNHQSSFAIQVAMKALEPRDAPVAAKRKNTAKAAKADAPGVADFLEDTAAVERNTAXXXXXXXXXXXXXXXXXXXPGGASRDSRLTCLTFRTEGDEVKALGRRVREVIKAGVRPGDIGVAAVGGGGVADTLVAALSAEGVPVEAPPRFSAVFDNETPRMLMSFLRCLVHPSESTPLLHLLMSCPAYALPGGELTAALEGHLSRYVPLRSFLRDSHLGERGDSHPREEGHGVSTSARTVAGKLLSDIDRFAETAKKTGVREVMLEFLRYSGQLERLEEPTTKEEEQEGRAVAEFFELTARAERQAGGDRVTLVEPILRLFRRHGTGYMKPSGPHDDEAATGGEFGGSSADYGGAVRVFRPGEDWKAGENRSFHTVFIPFCSRAHLPGNLRTARLTVPGPFRGYPEPRDTGGLRAEADLARAGHENRGRATLYAALGSAGREVCLSVSARATRGKTHLSPSPFLAEILGDDAPREWKTAIETPKDQEDRLHFLVDEDAAAPGVSIDAATKVVEGGYATVAGRLKSASPSPAAVALRLSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASGGRGAGSPPTLEAVVEDFSRHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRRCAAGAGSGHNSQPRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPRLLSITDYKSNVGAKVPSRMVRDNLQLRIYALAAERLFGTTPTEIAIESIEDGRRGVAVPLAADAEIALEAISATATAVRAERFEATPSFQACTFCSFKHMCQHSVVANAAL 3480
            RIVDEFGPTVGS+ TAADA VLNRNSLSVFLHRNL ALPLGKYRPLHDPG AVRPL+ LFSSLAHCGVSPEDYLRYVEALETELGTTAGG EQQGGV+VDDDAG GA A RARQRAQLEAEGWRAHVAGERDKA+ YEAFVDLKRREGV D+SDQLLLARRILRESATAKAALSLRLSHVYVDD+QWYSPAMID+LASLVAPGARITATADP LAAMS VG+F AEH+AIARFKKAFPGAQELHL GNH SS AIQ+AMK LEPRDAP AAKRKN+AKAAKADAPGVADFLEDTA VERNT+                   PG ASRDSRLTCLTF+TEGDEVKALGRRVREVIKAGV PGDIGVAAVGGGGVADTLVAALSA GVPVE+PPRFSAVFDNETPRMLMSFLRCLVHPSESTPLLHLLMSCPAYALPGGELTAALEGHLSRYVPLRSFLRD H GE GDSHPR  GHGVSTSAR VAGKLLSD+DRFAETAK+TGVRE+ML+FLRYSG+LERLEEPTTKEEE+EGRAVAEFFELTARAE+QAGGD V LVEPILRLFRRHGTGYMKPSGP DDEAATGGEFGGSSA   G VRVFR GEDW AGENRS+HTVFIPFCSRA LPGNLRT RLTVPGPFRGYPEPRDTG LRAEADLARA HENRGRA LYAALGSAG+EVCLSVSARA RGKTHLSPSPFLAEILGDDAPREW TAIETPKDQEDRLH + DE AAAPG S DAA KVVEGGYATVAGRL+SASPSPAA ALRLSFSSISSFAACP+SYFLQHVLNVSPPPNPRMVYG+AMHEGVAALLRGVASG RGAG PPTLEAVVEDF++HL GCAFES DQLRTLRAAGVAGLESFMSRLIE R C  GAGSGHNSQPRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVG GSSHP LLSITDYKSNVGAKVPSRMVRDNLQLRIYALAAERLFGT PTEIAIESIEDGRRGVAVPLAADA++ALEAISATATAVRAERFEATPSFQACTFCSFKHMC+HSVVA+AAL
Sbjct:   26 RIVDEFGPTVGSFDTAADAAVLNRNSLSVFLHRNLGALPLGKYRPLHDPGGAVRPLLGLFSSLAHCGVSPEDYLRYVEALETELGTTAGGGEQQGGVTVDDDAGSGAQARRARQRAQLEAEGWRAHVAGERDKANVYEAFVDLKRREGVEDFSDQLLLARRILRESATAKAALSLRLSHVYVDDIQWYSPAMIDILASLVAPGARITATADPHLAAMSRVGIFRAEHTAIARFKKAFPGAQELHLEGNHHSSSAIQMAMKTLEPRDAPAAAKRKNSAKAAKADAPGVADFLEDTAGVERNTSAAAAAATDEKPALATT---PGAASRDSRLTCLTFQTEGDEVKALGRRVREVIKAGVHPGDIGVAAVGGGGVADTLVAALSAAGVPVESPPRFSAVFDNETPRMLMSFLRCLVHPSESTPLLHLLMSCPAYALPGGELTAALEGHLSRYVPLRSFLRDIHSGEGGDSHPRGGGHGVSTSARNVAGKLLSDVDRFAETAKRTGVREIMLDFLRYSGRLERLEEPTTKEEEEEGRAVAEFFELTARAEQQAGGDNVALVEPILRLFRRHGTGYMKPSGPRDDEAATGGEFGGSSAGSSGVVRVFRLGEDWNAGENRSYHTVFIPFCSRARLPGNLRTPRLTVPGPFRGYPEPRDTGSLRAEADLARAYHENRGRAMLYAALGSAGQEVCLSVSARAIRGKTHLSPSPFLAEILGDDAPREWITAIETPKDQEDRLHLVEDEGAAAPGGSRDAAPKVVEGGYATVAGRLESASPSPAAAALRLSFSSISSFAACPYSYFLQHVLNVSPPPNPRMVYGQAMHEGVAALLRGVASGSRGAGPPPTLEAVVEDFNQHLRGCAFESVDQLRTLRAAGVAGLESFMSRLIEDRGCTTGAGSGHNSQPRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGEGSSHPGLLSITDYKSNVGAKVPSRMVRDNLQLRIYALAAERLFGTPPTEIAIESIEDGRRGVAVPLAADAKVALEAISATATAVRAERFEATPSFQACTFCSFKHMCRHSVVASAAL 1074          
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Match: A0A535RMS7_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535RMS7_9CHLR)

HSP 1 Score: 150 bits (380), Expect = 4.050e-33
Identity = 169/620 (27.26%), Postives = 250/620 (40.32%), Query Frame = 1
Query:  211 LLAVS-TQADCARLQQRIDLERPLGCTKCDVMTFPSLVRRIVDEFGPTVGSYYTAADAPVLNRNSLSVFLHRNLDALPLGKYRPLHDPGDAVRPLISLFSSLAHCGVSPEDYLRYV-------EALETELGTTAGGCEQQGGVSVDDDAGRGAPAGRARQRAQLEAEGWRAHVAGERDKADAYEAFVDLKRREGVADYSDQLLLARRILRESATAKAALSLRLSHVYVDDLQWYSPAMIDVLASLVAPGARITATADPQLAAMSSVGVFGAEHSAIARFKKAFPGAQELHLAGNHQS-SFAIQVAMKALEPRDAPVAAKRKNTAKAAKADAPGVADFLEDTAAVERNTAXXXXXXXXXXXXXXXXXXXPGGASRDSRLT-CLTFRTEGDEVKALGRRVREVIKAGVRPGDIGVAAVGGGGVADTLVAALSAEGVPVEAPPRFSA---VFDNETPRMLMSFLRCLVHPSESTPLLHLLMSCPAYALPGGELTAALEGHLSRYVPLRSFLRDSHLGERGDSHPREEGHGVSTSARTVAGKLLSDIDRFAETAKKTGVREVMLEFLRYSGQLERLEEPTTKEEEQEGRAVAEFFELTARAERQAGGDRVTLVEPILRLFRRHG 2031
            +LAV+ T+   A +++R+DL  PLG +   + TF +   +IV EF   +G     ++  VL+    ++FL  +L  LPL  YRPL DP   VR LI+LFS      VSP++Y  Y        EA   + G      +Q+                                          Y A+ +LK R GV D++DQ+ LA RILRE   A   L  R  +V VD+ Q  + A  ++L  L A    IT   D      S     GA  S +  F++AFP A+ + L  N +S    +  A + +   D                      D LE    + +                         A  + RL   L F T  DE  ++  R+ + +  G   GD  +  V     A+  + AL+  G+P     RFS    ++     R+L++FL  +  PSES  L +LL + P Y  P  +L  ALEG   R V LR  L     G+            VS +    A +L++D+  F   A +    EV+ EFLR SG LE+L    +   E + + +A+FF +          DRV      + L    G
Sbjct:   77 ILAVTFTEKAAAEMEERVDLLTPLGQSNVAIATFHAFGDQIVKEFALELG---IGSELKVLSDAEQAIFLRAHLFELPLRHYRPLGDPTRHVRSLITLFSRARDEDVSPQEYRSYARSQRQLSEANPNDTGLAEASEQQEXXXXX-------------------------------------YAAYEELKARNGVLDFADQISLALRILREHPAAAKRLRSRYRYVLVDEFQDTNHAQFELLQLLCADHRNITVVGDDD---QSIFKWRGAALSNMVMFREAFPEAKLVSLTQNFRSHQLILDPAYRLIRHNDP---------------------DRLEVQLGISKRI---------------------WSARGEGRLAEFLPFATASDEADSVAERIADGMTGGRGAGDFAIL-VRANRDAEPFMTALAHRGIPY----RFSGTAGLYQRGEIRLLLAFLYAVARPSESRQL-YLLAASPLYGFPNADLVHALEGANRRTVTLRDVLERIADGDED----------VSEAGADAARRLVADLRHFTAMAGERTTGEVLYEFLRKSGTLEQLARAESVAAEDQAKNIAKFFTIVRSVGETLSVDRVPFFVDEIDLLLEAG 595          
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Match: A0A1V9ZJZ9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJZ9_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.030e-27
Identity = 186/679 (27.39%), Postives = 270/679 (39.76%), Query Frame = 1
Query: 1453 LVAALSAEGVPVEAPPRFSAVFDNETPRMLMSFLRCLVHPSESTPLLHLLMSCPAYALPGGELTAALEGHLSRYVPLRSFL--RDSHLGERGDSHPREEGHGVSTSARTVAGKLLSDIDRFAETAKKTGVREVMLEFLRYSGQLERLEEPTTKEEEQEGRAVAEFFELTARAERQAGGDRVTLVEPILRLFRRHGTGYMKPSGPHDDEAATGGEFGGSSADYGGAVRVFRPGEDWKAGENRSFHTVFIPFCSRAHLPGNLRTARLTVPGPFRGYPEPRDTGGLRAEADLA----RAGHENRGRATLYAALGSAGREVCLSVSARATRGKTHLSPSPFLAEILGDDAPREWKTAIETPKDQEDRLHFLVDEDAAAPGVSIDAATKVVEGGYATVAGRLKSASPSPAAVALRLSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASGGRGAGSPPTLEAVVEDFSRHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRRCAAGAGSGHNSQPRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPRLLSITDYKSNVGAKVP---SRMVRDNLQLRIYALAAERLFGTTPTEIAIESIEDGRR----GVAVPLAADAEIALEAISATATAVRAERFEATPSFQACTFCSFKHMC 3450
            ++A L+A GVP  +  R + +F ++  R   + L+ L  P++S  L  LL +     L    L   +E  L+RY    +F   R SH+      H  +     + +   +A   L+  DR    A +    E++ +     G L RL EP T  + +   A+A F  L + A+  AG   V  V   + + R  G    + S P D        F     D    V V      W+   +     + +P   RA +   L T       P R   +PR  G       L     R  H    R  L A L  A   V LS +A     +  ++P P   E++   A +E   A+  P                                         SA P P      LSF+ I  +  CPH Y L  VL + P  N  MVYGRA+HE +AA  +  +       +   LE          G C   SA +   LRA     L SF+              + H +      VE  F + +PEA V+L G++DRV+  A    G      + I ++K+NV A  P     +  ++LQL++Y LA  RL G+ P    + S+E        G+    AA   +ALEAI ATA A+RA  FEATPSF  C+FC+F  +C
Sbjct:  363 MLARLAAAGVPATSLER-TDLFAHKAVRACYALLQALAAPTDSKHLFALLQASTYLRLAPVALAEVVEQSLARYATNAAFASSRRSHV------HLYDALAAYAATEPPLAA-FLALFDRLRARAMELPATELLHQAQARIGDLTRLLEPATPADAEASDALAAFLRLVSDAQDAAGSPFVPFVASRVAMLRAVG----RTSAPRD--------FALLDTDADAQVLVASLRTAWRLPAHVKVPRLPVP---RATVDSLLLTHVHDKALPGR---KPRGIGAGVLPPGLVGATMRDDHVAASRVRLAALLLRATDRVVLSHAAAQPLSRL-VAPWPEPVELV--PAAQESPPALVAPL----------------------------------------SAPPPPPFALEHLSFTQIDEYLRCPHRYELSRVLRLEPKANASMVYGRALHEAIAAWTQRASETEAAEDARAALERAWTP-----GSC--RSAAEETALRAQAQDALASFIE-----------YEAAHGTAADVQSVEEAFELTVPEADVLLRGVWDRVERRA---NGD-----VFIVEFKANV-ANTPRDNQALAEESLQLKLYMLAYHRLTGSAPRGAVLRSLESVHGQCAPGIVEHSAASDAVALEAIVATAAAIRARSFEATPSFLGCSFCAFGEVC 945          
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Match: T0QEL6_SAPDV (UvrD-like helicase C-terminal domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QEL6_SAPDV)

HSP 1 Score: 115 bits (288), Expect = 3.480e-22
Identity = 93/269 (34.57%), Postives = 135/269 (50.19%), Query Frame = 1
Query: 2665 LSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASGGRGAGSPPTLEAVVEDFSRHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRRCAAGAGSGHNSQPRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPRLLSITDYKSNVG--AKVPSRMVRDNLQLRIYALAAERLFGTTPTEIAIESIEDGRRGVAVP--LAADAEI---ALEAISATATAVRAERFEATPSFQACTFCSFKHMC 3450
            LSFS I  +  CPH Y+L  VL + P  N  MVYGR++HE +A      +     + +   L A  + ++   G C   S  + R L+A G A L SF+            A     ++P +  +E+ F   +PEA V+  G++DRV+ E     G  +     I ++KSN+    +   ++  ++LQL++Y LA  RL G  P    + S+E    G+  P  LA  AE    AL AI ATA A+RA  F+ATPSF  C FCSF  +C
Sbjct:  709 LSFSQIDEYMRCPHRYYLARVLGLEPKANSSMVYGRSLHEAIATYA---SIAPHASAAEDALAAFTKAWTP--GSC--RSLVEERILQAQGAAALRSFI------------AYEADRTRPIES-IEQAFEFHVPEADVLFRGVWDRVEREPT---GDVY-----IVEFKSNLADTRRDNQKLANESLQLQLYMLAYHRLHGRPPKGALLRSLETNH-GLNAPGVLAHSAETDGAALRAIQATAQAIRARAFDATPSFLGCAFCSFSDIC 948          
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Match: A0A1Q7MEX4_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium 13_1_40CM_3_70_6 TaxID=1805073 RepID=A0A1Q7MEX4_9CHLR)

HSP 1 Score: 111 bits (278), Expect = 5.580e-21
Identity = 93/288 (32.29%), Postives = 129/288 (44.79%), Query Frame = 1
Query: 2638 PSPAAVA---LRLSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASGGRGAGSPPTLEAVVEDFSRHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRRCAAGAGSGHNSQPRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPRLLSITDYKSNV---GAKVPSRMVRDNLQLRIYALAAERLFGTTPTEIAIESIEDGRRGVAVPLAADAEIALEAISATATAVRAERFEATPS--FQACTFCSFKHMCQHSVVANAA 3477
            P PA  A   L +S+S +  +  CP  Y   HVL +   P P+M YG A+HE V   LR    GG      P+LE +   F        F S +      AAG+A L  F  +                S P   LVE++F   + +  VV  G +DRVD E         P    I DYK+     G+  P ++   +LQLR+YALA ER++G  P   A+  +E G RGV  P   D  +    +S+ A  +RA  F A P+   + C  C +  +C  S+ A AA
Sbjct:  732 PLPALAADDVLTVSYSDLDDYRRCPLLYRFAHVLQIPVLPTPQMTYGLALHEAVKDYLRRKRDGGT-----PSLEDLQSVFRAAWLAEGFISPEHESERFAAGLAALRKFHEQ--------------EQSAPSPELVEQRFSFMLGKDRVV--GRWDRVDRE---------PDGALIVDYKAGAAEEGSGRPQQVANQDLQLRLYALAHERMYGERPARAALHFLESGERGVITPTDDDLSLVRTLVSSIAAKIRAREFAANPARGLRTCQQCPYHQICPSSLTARAA 989          
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Match: A0A1Q7HMG1_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium 13_1_40CM_4_68_4 TaxID=1805077 RepID=A0A1Q7HMG1_9CHLR)

HSP 1 Score: 109 bits (273), Expect = 2.130e-20
Identity = 105/358 (29.33%), Postives = 152/358 (42.46%), Query Frame = 1
Query: 2434 PSPFLAEILGDDAPREWKTAIETPKDQEDRLHFLVDE-DAAAPGVSIDAATKVVEGGYATVAGRLKSASPSPAAVALRLSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASGGRGAGSPPTLEAVVEDFSRHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRRCAAGAGS------GHNSQPRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPRLLSITDYKSNV---GAKVPSRMVRDNLQLRIYALAAERLFGTTPTEIAIESIEDGRRGVAVPLAADAEIALEAISATATAVRAERFEATPS--FQACTFCSFKHMCQHSVVAN 3471
            PS F+AE LG +  R   TA  +  ++  R     DE D+  P +  D                            L +S+S I  +  CP  Y  ++VL +   P+P M+YG A+HE V+  LR      R  G  PTL                  AD   T RAA +A  E F+S   E  R  AG  +          +P   LVE++F   +    VV  G +DRVD +A             + DYKS     G++ P ++   +LQLR+YALA ER++GT P    +   E G RG   P  AD  +    +++ A  +RA  F A P+   + C  C++  +C  S+ A 
Sbjct:  679 PSRFIAEALGREPQRI--TARLSAYEELQRFEVAADEPDSPLPALGPDDV--------------------------LTVSYSDIEDYRRCPLLYRFKYVLRIPVLPSPSMIYGLALHEAVSDFLRR-----RREGDQPTL------------------ADLQATFRAAWLA--EGFISPEHESERFQAGLEALRRFYEDERGKPAPDLVEQRFSFMLGRDRVV--GRWDRVDQDAGKA---------QVVDYKSTAVTEGSEKPQQLANQDLQLRLYALAHERMYGTRPDRATLHFFETGARGTIEPSDADMSVVKTLVTSVAAKIRAREFGAAPAKGVKTCLECAYHQICPSSLTAR 972          
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Match: A0A536CTL2_9CHLR (DNA helicase n=3 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536CTL2_9CHLR)

HSP 1 Score: 109 bits (272), Expect = 3.080e-20
Identity = 92/290 (31.72%), Postives = 129/290 (44.48%), Query Frame = 1
Query: 2659 LRLSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASGGRGAGSPPTLEAVVEDFSRHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRRCAAGAGS------GHNSQPRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPRLLSITDYKSNV---GAKVPSRMVRDNLQLRIYALAAERLFGTTPTEIAIESIEDGRRGVAVPLAADAEIALEAISATATAVRAERFEATPS--FQACTFCSFKHMCQHSVVANAAL*TYVL 3495
            L +S+S I  +  CP  Y  +HVL +   P P M+YG A+HE V   LR      +  G  PTLE                  D   T +AA +A  E F+S   E  R  AG  +           P   LVE++F   +    VV  G +DRVD           P   ++ DYKS+    G+  P R    +LQLR+YALA ER++GT P   A+  +E G RG   P   D  +    I+ATA+ +RA  F   P+   + C  C +  +C  S+ A     T ++
Sbjct:  830 LTVSYSDIEDYRRCPLLYRFKHVLQIPVLPTPPMIYGLALHEAVRDYLRR-----KREGETPTLE------------------DLQATFKAAWLA--EGFISPEHESERFTAGLEALRRFHEQERGMPAADLVEQRFSFMLGRDRVV--GRWDRVD---------RTPEGPAVVDYKSSAVDEGSDKPQRAANQDLQLRLYALAHERMYGTRPARAALHFLETGERGSITPSDDDMSLVATVITATASRIRAREFGPAPAKGLRTCQQCPYHQICPSSLTARGVAGTQLI 1083          
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Match: A0A485KYY6_9STRA (DNA helicase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYY6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.270e-20
Identity = 87/272 (31.99%), Postives = 133/272 (48.90%), Query Frame = 1
Query: 2665 LSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASGGRGAGSPPTLEAVVEDFSRHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRRCAAGAGSGHNSQPRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPRLLSITDYKSNV--GAKVPSRMVRDNLQLRIYALAAERLFGTTPTEIAIESIED--GRRGVA-VPLAADAEIA-LEAISATATAVRAERFEATPSFQACTFCSFKHMCQHSV 3462
            +S+S I  +  CPH Y+L  VL ++PP  P +VYGR++HEG+AA  R  AS    + +   LEA    +     GC    A++++    A  A L SF+                H        VE  F V +PEA+V L G++DR  IE    G       + + ++KSN+  G +   ++  ++LQL++Y LA  R +G  P    + S+E   GR     VP A+  + A LE +S TA  +RA  F+  PS+  C +C F  +C   +
Sbjct:  717 VSYSQIDEYTRCPHRYYLSRVLQLAPPMAPGLVYGRSLHEGIAAWSRLPASL---SATSDALEAFTSSWET---GCFRSKAEEMQLFDQA-QATLLSFID-----------FEETHKGGTIIEAVELPFEVDLPEANVRLKGVWDR--IEQREDG-------VYVVEFKSNLSNGPRNNQKLANESLQLQLYMLAYARQYGVAPAGGVLRSLESPHGRNSEGIVPYASSTDAAVLEVVSTTAARIRAREFDPLPSYLGCAYCPFADVCASKI 961          
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Match: A0A6G0XWR5_9STRA (DNA helicase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWR5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.260e-20
Identity = 83/269 (30.86%), Postives = 129/269 (47.96%), Query Frame = 1
Query: 2665 LSFSSISSFAACPHSYFLQHVLNVSPPPNPRMVYGRAMHEGVAALLRGVASGGRGAGSPPTLEAVVEDFSRHLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRRCAAGAGSGHNSQPRQL-LVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPRLLSITDYKSNVG--AKVPSRMVRDNLQLRIYALAAERLFGTTPTEIAIESIED----GRRGVAVPLAADAEIALEAISATATAVRAERFEATPSFQACTFCSFKHMC 3450
            LSFS I  +  CP+ YFL  V+ + P  +P +V+GR++HE +AA      S      SP   E  +E FS       F S+++ + L   G   L SF+S                +SQ R +  VE  F V I EA V L G++DR++              L I ++KSN+    +    +   NLQL++Y +A  RL G +PT   + S+E        G+ +   +  E A++AI   A ++R ++F+  P+F  C+FC F  +C
Sbjct:  719 LSFSQIDEYMRCPYRYFLSRVVKMEPKMSPGLVFGRSIHESIAAW-----SQSSDLQSPQAYENALEAFSSSWQTGCFRSSEEEKRLFEQGQQTLSSFIS--------------FESSQNRVIEAVEMPFQVDITEAGVRLKGVWDRIERRGEE---------LYIVEFKSNLSNAQRNNQTLAESNLQLQLYMMAFARLQGISPTGAILRSLETTHGLNEEGIVLHSPSADETAIKAIVDAAQSIRQQKFDPLPTFMGCSFCPFADIC 959          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1202.1727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KME1_9PHAE0.000e+090.10DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FWN6_ECTSI0.000e+089.07DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A535RMS7_9CHLR4.050e-3327.26DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2... [more]
A0A1V9ZJZ9_9STRA2.030e-2727.39Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QEL6_SAPDV3.480e-2234.57UvrD-like helicase C-terminal domain-containing pr... [more]
A0A1Q7MEX4_9CHLR5.580e-2132.29DNA helicase n=1 Tax=Chloroflexi bacterium 13_1_40... [more]
A0A1Q7HMG1_9CHLR2.130e-2029.33DNA helicase n=1 Tax=Chloroflexi bacterium 13_1_40... [more]
A0A536CTL2_9CHLR3.080e-2031.72DNA helicase n=3 Tax=Chloroflexi bacterium TaxID=2... [more]
A0A485KYY6_9STRA6.270e-2031.99DNA helicase n=1 Tax=Aphanomyces stellatus TaxID=1... [more]
A0A6G0XWR5_9STRA8.260e-2030.86DNA helicase n=1 Tax=Aphanomyces euteiches TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1202contigEcto-sp13_S_contig1202:857..5419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1787.7
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FWN6
Model size4196
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.PD-(D/E)XK nuclease superfamily
EggNOG OGs28MGR@1,2QU06@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-06_001330.1
Cds size3456
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.3765967-UTR-Ecto-sp13_S_contig1202:856..15691681462638.3765967-UTR-Ecto-sp13_S_contig1202:856..1569Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1202 857..1569 -
1681462638.4102006-UTR-Ecto-sp13_S_contig1202:5392..54191681462638.4102006-UTR-Ecto-sp13_S_contig1202:5392..5419Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1202 5393..5419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.3880534-CDS-Ecto-sp13_S_contig1202:1569..30811681462638.3880534-CDS-Ecto-sp13_S_contig1202:1569..3081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1202 1570..3081 -
1681462638.3998277-CDS-Ecto-sp13_S_contig1202:3448..53921681462638.3998277-CDS-Ecto-sp13_S_contig1202:3448..5392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1202 3449..5392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1202.1727.1prot_Ecto-sp13_S_contig1202.1727.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1202 1570..5392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1202.1727.1

>prot_Ecto-sp13_S_contig1202.1727.1 ID=prot_Ecto-sp13_S_contig1202.1727.1|Name=mRNA_Ecto-sp13_S_contig1202.1727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1152bp
MISAAPRSAGQATLITGLLGSGKTWSLTNQVLQAASETASSSPPRQQQQQ
VSAAAAGSAGSLLAVSTQADCARLQQRIDLERPLGCTKCDVMTFPSLVRR
IVDEFGPTVGSYYTAADAPVLNRNSLSVFLHRNLDALPLGKYRPLHDPGD
AVRPLISLFSSLAHCGVSPEDYLRYVEALETELGTTAGGCEQQGGVSVDD
DAGRGAPAGRARQRAQLEAEGWRAHVAGERDKADAYEAFVDLKRREGVAD
YSDQLLLARRILRESATAKAALSLRLSHVYVDDLQWYSPAMIDVLASLVA
PGARITATADPQLAAMSSVGVFGAEHSAIARFKKAFPGAQELHLAGNHQS
SFAIQVAMKALEPRDAPVAAKRKNTAKAAKADAPGVADFLEDTAAVERNT
AAAAAAAAAATDEKPAPPTTPGGASRDSRLTCLTFRTEGDEVKALGRRVR
EVIKAGVRPGDIGVAAVGGGGVADTLVAALSAEGVPVEAPPRFSAVFDNE
TPRMLMSFLRCLVHPSESTPLLHLLMSCPAYALPGGELTAALEGHLSRYV
PLRSFLRDSHLGERGDSHPREEGHGVSTSARTVAGKLLSDIDRFAETAKK
TGVREVMLEFLRYSGQLERLEEPTTKEEEQEGRAVAEFFELTARAERQAG
GDRVTLVEPILRLFRRHGTGYMKPSGPHDDEAATGGEFGGSSADYGGAVR
VFRPGEDWKAGENRSFHTVFIPFCSRAHLPGNLRTARLTVPGPFRGYPEP
RDTGGLRAEADLARAGHENRGRATLYAALGSAGREVCLSVSARATRGKTH
LSPSPFLAEILGDDAPREWKTAIETPKDQEDRLHFLVDEDAAAPGVSIDA
ATKVVEGGYATVAGRLKSASPSPAAVALRLSFSSISSFAACPHSYFLQHV
LNVSPPPNPRMVYGRAMHEGVAALLRGVASGGRGAGSPPTLEAVVEDFSR
HLGGCAFESADQLRTLRAAGVAGLESFMSRLIEGRRCAAGAGSGHNSQPR
QLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGGGSSHPRLLSITDYKSN
VGAKVPSRMVRDNLQLRIYALAAERLFGTTPTEIAIESIEDGRRGVAVPL
AADAEIALEAISATATAVRAERFEATPSFQACTFCSFKHMCQHSVVANAA
L*
back to top

mRNA from alignment at Ecto-sp13_S_contig1202:857..5419-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1202.1727.1 ID=mRNA_Ecto-sp13_S_contig1202.1727.1|Name=mRNA_Ecto-sp13_S_contig1202.1727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4563bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1202:857..5419- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTTGGAGATGCATGCCCTTGATTCATGATCTCGGCAGCACCGCGATC GGCGGGCCAGGCAACTCTCATCACCGGACTGCTAGGCTCCGGTAAGACAT GGTCCTTGACCAATCAGGTGTTGCAAGCGGCAAGCGAAACGGCATCATCG TCGCCGCCACGGCAGCAGCAACAACAAGTCAGCGCAGCAGCAGCGGGCTC CGCCGGCTCTCTTCTCGCAGTGAGCACGCAAGCTGACTGCGCCCGCCTCC AACAGAGGATCGACCTCGAACGGCCGCTGGGGTGCACAAAATGCGACGTC ATGACCTTCCCGTCTCTGGTCCGAAGGATTGTCGATGAATTCGGCCCCAC GGTCGGGAGCTACTACACCGCCGCCGACGCCCCCGTCCTCAACCGCAACA GCCTCTCCGTCTTCCTGCACCGCAACCTCGACGCCCTCCCTCTCGGCAAG TACCGCCCGCTGCACGACCCGGGGGACGCCGTCCGGCCGCTGATCAGCCT CTTCTCCAGCCTCGCGCACTGCGGGGTCTCGCCCGAAGACTATCTCCGAT ATGTGGAGGCCCTGGAAACGGAGCTGGGCACAACTGCTGGTGGTTGCGAA CAACAAGGAGGCGTTTCTGTCGACGACGACGCCGGGAGAGGTGCACCGGC TGGGCGGGCGAGACAGCGGGCGCAACTCGAAGCCGAAGGCTGGCGCGCAC ACGTCGCCGGGGAGCGAGACAAGGCCGACGCCTACGAGGCCTTCGTGGAC CTCAAGAGGCGGGAAGGGGTCGCGGACTATTCCGACCAGCTGCTGTTGGC GCGGCGGATCCTGAGAGAAAGCGCCACGGCGAAGGCCGCGCTGTCGCTGC GCTTGTCGCACGTCTACGTAGACGACTTACAGTGGTACTCGCCCGCGATG ATCGATGTTCTGGCGAGTCTTGTTGCTCCGGGGGCGAGGATTACGGCGAC GGCGGACCCGCAGTTGGCGGCCATGTCTAGCGTTGGAGTCTTTGGCGCCG AGCACTCAGCCATCGCCCGGTTTAAGAAGGCCTTTCCGGGCGCCCAGGAA CTTCACCTCGCGGGCAACCACCAGAGTAGTTTTGCCATCCAGGTGGCCAT GAAGGCGCTAGAGCCTCGCGATGCTCCGGTGGCGGCAAAGAGGAAGAACA CAGCAAAGGCGGCGAAGGCGGACGCACCGGGCGTTGCTGATTTTCTTGAA GACACTGCTGCTGTTGAAAGAAACACAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAACGGACGAGAAGCCCGCGCCTCCAACGACACCAGGAGGAGCAA GTAGAGACAGCCGGCTGACCTGCCTCACATTTCGAACGGAGGGAGACGAG GTGAAAGCTTTGGGGAGGAGAGTCCGAGAGGTGATCAAAGCCGGGGTGCG CCCGGGTGATATTGGGGTGGCAGCCGTCGGAGGGGGGGGCGTTGCGGACA CCTTGGTTGCGGCACTCAGTGCAGAAGGGGTGCCGGTTGAGGCTCCCCCG CGCTTCTCGGCGGTGTTCGACAACGAGACGCCGCGGATGCTCATGTCTTT TCTCCGGTGCCTGGTGCACCCCTCAGAATCGACCCCTCTGCTACACCTGC TCATGTCTTGCCCCGCGTACGCGCTGCCCGGCGGCGAGCTGACGGCAGCC TTGGAAGGGCACCTATCGCGGTACGTACCCTTGCGGTCGTTTCTTCGAGA TAGCCACTTGGGCGAGAGAGGGGACTCGCACCCACGAGAGGAGGGGCACG GGGTTTCGACCAGCGCGAGGACCGTCGCTGGGAAGCTCCTGTCCGACATC GATCGATTTGCGGAAACGGCGAAAAAGACAGGGGTGAGGGAAGTCATGCT CGAATTTTTGAGGTATTCGGGGCAACTGGAGCGGCTCGAGGAGCCCACCA CGAAGGAGGAAGAGCAGGAGGGGCGAGCAGTGGCGGAGTTCTTCGAGCTC ACTGCGAGGGCAGAGCGACAGGTGAAGTTAGTTGTGGTTGGGTGAAGCGG GCTCTCGGTGCGTTCCTTTCTGGCCTTTTTTTGTTTGTTTGTTTGTTTCA TACTTCTTGTCAAGTGTAGGCGTGGTACTACCAGGCGAAACGCTGACAGC AGTACCGTTCAAGTATTTCTCTCACTGAACACACCGTTGAAAGTTGCACA CTGATGAAACCTGTCTTTTTTATGTCCTTTTCGAAAAGTGCGTTGACAGC ACGTGGGCGGCACGGATGTATACCACTATTCCTCAGCAGGTGCTAAGCGA ATAGTTGCACGTATTCCTTGCTTCCAACCCCACCGTAACCAGTAAAAGCT GCTCGATTGCCGCCGCCCTTTGGTACGTGTACCAACAGGCTGGGGGTGAC AGAGTCACCCTCGTCGAACCGATCCTCCGCTTGTTCCGGCGCCATGGCAC TGGGTACATGAAACCCTCTGGGCCCCACGACGACGAGGCAGCGACAGGCG GGGAATTCGGGGGCTCCTCTGCTGATTACGGCGGCGCTGTCCGCGTCTTT CGACCTGGCGAGGACTGGAAAGCCGGAGAAAACCGCTCATTTCACACCGT GTTCATCCCGTTCTGCAGCAGAGCGCACCTCCCCGGTAACCTTCGAACGG CGCGCTTGACGGTGCCGGGACCGTTCCGCGGTTATCCGGAGCCGCGGGAC ACTGGGGGCCTACGAGCAGAGGCTGATCTTGCACGCGCCGGCCATGAGAA CCGGGGCAGAGCGACGCTGTACGCCGCTCTGGGCTCTGCCGGGCGGGAGG TTTGCCTCAGCGTTTCAGCCCGGGCCACCCGCGGGAAGACGCACCTAAGC CCTAGCCCGTTTCTTGCCGAGATCCTGGGGGATGACGCCCCGCGGGAGTG GAAAACGGCGATTGAGACGCCGAAGGATCAAGAGGACCGCTTACACTTTC TGGTGGACGAGGATGCTGCTGCGCCCGGGGTCAGCATAGACGCAGCGACG AAGGTCGTTGAGGGGGGGTATGCCACCGTTGCCGGGAGGCTCAAGTCCGC GTCGCCGTCGCCGGCGGCGGTGGCGCTCCGGCTGTCCTTCTCTTCCATTT CGTCGTTTGCGGCGTGCCCGCACAGCTACTTCCTCCAGCACGTGCTTAAC GTGTCCCCTCCGCCGAACCCGCGAATGGTGTACGGCCGAGCGATGCACGA GGGGGTCGCCGCGTTGCTGCGTGGCGTGGCGAGCGGGGGCCGGGGGGCTG GCTCGCCCCCGACCCTAGAAGCCGTGGTGGAAGACTTCAGCCGACACCTT GGGGGATGCGCGTTCGAGTCGGCGGACCAGCTGCGCACGCTGAGGGCGGC TGGCGTGGCCGGCTTGGAATCGTTCATGTCTAGGCTCATCGAGGGCAGAC GCTGCGCGGCCGGGGCGGGCTCTGGTCACAACTCGCAACCGCGTCAGCTC CTCGTGGAACGCAAGTTTATGGTGAAGATTCCGGAGGCGAGCGTCGTGCT CTCAGGAATTTTCGACAGGGTGGACATCGAGGCGGCTGTCGGCGGGGGCT CTTCGCACCCTAGGTTGCTCTCCATAACGGACTACAAATCGAACGTCGGC GCGAAAGTCCCAAGTCGAATGGTCCGGGACAACCTCCAGCTCCGGATCTA CGCGCTCGCGGCCGAGCGGCTGTTTGGAACTACACCGACCGAGATAGCGA TAGAGTCGATAGAGGACGGGCGTAGGGGGGTAGCGGTGCCGCTTGCGGCC GACGCGGAGATTGCCTTGGAGGCAATTTCCGCCACGGCGACGGCGGTTCG CGCGGAGCGGTTCGAGGCCACCCCGTCTTTCCAGGCGTGCACTTTCTGCA GCTTCAAGCACATGTGCCAGCACTCGGTCGTCGCAAATGCAGCCCTTTAG ACATACGTGTTGAAGTCGCATGTGCCGCGCATGTATGGGGTCTGAATGGC CGCGAATTGTTCTGAAGAATTCCCGCGGTATTTGAGTCAACCTTATCGTG CTTCGTTGAGGACAGACTCGCGCCGCTGGACTTTGTCCTCGTAGGTGGTG TCCTACTAAACCCTTGATCTCGTCGTGCCGCTTGAGTCTCTCTTTGACCG GTATGCTCTTCCTCTTGTCAGGGTGCCGACGGTCTCCATCTTTTGGTGGG GGCATGAGAGAATTTGTAGCAGAGAAACGTCATCTATCGTGCCGAAGGTT TAGTAGAAATGGTTCGGACTTGTGTTTCGGCACGATCGTTTTAATTTCGC CAGTTCGATACCATGTGATGTTAAGATCAATTTGCATGCATGCTCCGAAG TTTGGGCCTTGTGCCTTCTCTAGAGCACCAGGTAGCTGCAGCACCCCTAC CTTGGCTGACGCTCAGCGCTTGTCTCCAGCAACAACTATTGTCGTGGCAT CGGCATGGATTGATTGATGCTCCGCGAGGATGCACATGTCGTAGTAAAGA TGTCAAGGTCCAGCAGATACCTGTCGGAGACGGTACTACTGCTGTGTACT GCGAGCCCTGGGTTTCTTTTGCTCGCTGAACTCATTGGACGTTCAGGGGC GCCGGCCGAATTTTGTATGCACACATGTATTCCGGGTTTTTGTCACAAGC GTAGCGAAACCTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1202:857..5419-

>mRNA_Ecto-sp13_S_contig1202.1727.1 ID=mRNA_Ecto-sp13_S_contig1202.1727.1|Name=mRNA_Ecto-sp13_S_contig1202.1727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1202:857..5419- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTCGGCAGCACCGCGATCGGCGGGCCAGGCAACTCTCATCACCGG
ACTGCTAGGCTCCGGTAAGACATGGTCCTTGACCAATCAGGTGTTGCAAG
CGGCAAGCGAAACGGCATCATCGTCGCCGCCACGGCAGCAGCAACAACAA
GTCAGCGCAGCAGCAGCGGGCTCCGCCGGCTCTCTTCTCGCAGTGAGCAC
GCAAGCTGACTGCGCCCGCCTCCAACAGAGGATCGACCTCGAACGGCCGC
TGGGGTGCACAAAATGCGACGTCATGACCTTCCCGTCTCTGGTCCGAAGG
ATTGTCGATGAATTCGGCCCCACGGTCGGGAGCTACTACACCGCCGCCGA
CGCCCCCGTCCTCAACCGCAACAGCCTCTCCGTCTTCCTGCACCGCAACC
TCGACGCCCTCCCTCTCGGCAAGTACCGCCCGCTGCACGACCCGGGGGAC
GCCGTCCGGCCGCTGATCAGCCTCTTCTCCAGCCTCGCGCACTGCGGGGT
CTCGCCCGAAGACTATCTCCGATATGTGGAGGCCCTGGAAACGGAGCTGG
GCACAACTGCTGGTGGTTGCGAACAACAAGGAGGCGTTTCTGTCGACGAC
GACGCCGGGAGAGGTGCACCGGCTGGGCGGGCGAGACAGCGGGCGCAACT
CGAAGCCGAAGGCTGGCGCGCACACGTCGCCGGGGAGCGAGACAAGGCCG
ACGCCTACGAGGCCTTCGTGGACCTCAAGAGGCGGGAAGGGGTCGCGGAC
TATTCCGACCAGCTGCTGTTGGCGCGGCGGATCCTGAGAGAAAGCGCCAC
GGCGAAGGCCGCGCTGTCGCTGCGCTTGTCGCACGTCTACGTAGACGACT
TACAGTGGTACTCGCCCGCGATGATCGATGTTCTGGCGAGTCTTGTTGCT
CCGGGGGCGAGGATTACGGCGACGGCGGACCCGCAGTTGGCGGCCATGTC
TAGCGTTGGAGTCTTTGGCGCCGAGCACTCAGCCATCGCCCGGTTTAAGA
AGGCCTTTCCGGGCGCCCAGGAACTTCACCTCGCGGGCAACCACCAGAGT
AGTTTTGCCATCCAGGTGGCCATGAAGGCGCTAGAGCCTCGCGATGCTCC
GGTGGCGGCAAAGAGGAAGAACACAGCAAAGGCGGCGAAGGCGGACGCAC
CGGGCGTTGCTGATTTTCTTGAAGACACTGCTGCTGTTGAAAGAAACACA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGACGAGAAGCCCGCGCC
TCCAACGACACCAGGAGGAGCAAGTAGAGACAGCCGGCTGACCTGCCTCA
CATTTCGAACGGAGGGAGACGAGGTGAAAGCTTTGGGGAGGAGAGTCCGA
GAGGTGATCAAAGCCGGGGTGCGCCCGGGTGATATTGGGGTGGCAGCCGT
CGGAGGGGGGGGCGTTGCGGACACCTTGGTTGCGGCACTCAGTGCAGAAG
GGGTGCCGGTTGAGGCTCCCCCGCGCTTCTCGGCGGTGTTCGACAACGAG
ACGCCGCGGATGCTCATGTCTTTTCTCCGGTGCCTGGTGCACCCCTCAGA
ATCGACCCCTCTGCTACACCTGCTCATGTCTTGCCCCGCGTACGCGCTGC
CCGGCGGCGAGCTGACGGCAGCCTTGGAAGGGCACCTATCGCGGTACGTA
CCCTTGCGGTCGTTTCTTCGAGATAGCCACTTGGGCGAGAGAGGGGACTC
GCACCCACGAGAGGAGGGGCACGGGGTTTCGACCAGCGCGAGGACCGTCG
CTGGGAAGCTCCTGTCCGACATCGATCGATTTGCGGAAACGGCGAAAAAG
ACAGGGGTGAGGGAAGTCATGCTCGAATTTTTGAGGTATTCGGGGCAACT
GGAGCGGCTCGAGGAGCCCACCACGAAGGAGGAAGAGCAGGAGGGGCGAG
CAGTGGCGGAGTTCTTCGAGCTCACTGCGAGGGCAGAGCGACAGGCTGGG
GGTGACAGAGTCACCCTCGTCGAACCGATCCTCCGCTTGTTCCGGCGCCA
TGGCACTGGGTACATGAAACCCTCTGGGCCCCACGACGACGAGGCAGCGA
CAGGCGGGGAATTCGGGGGCTCCTCTGCTGATTACGGCGGCGCTGTCCGC
GTCTTTCGACCTGGCGAGGACTGGAAAGCCGGAGAAAACCGCTCATTTCA
CACCGTGTTCATCCCGTTCTGCAGCAGAGCGCACCTCCCCGGTAACCTTC
GAACGGCGCGCTTGACGGTGCCGGGACCGTTCCGCGGTTATCCGGAGCCG
CGGGACACTGGGGGCCTACGAGCAGAGGCTGATCTTGCACGCGCCGGCCA
TGAGAACCGGGGCAGAGCGACGCTGTACGCCGCTCTGGGCTCTGCCGGGC
GGGAGGTTTGCCTCAGCGTTTCAGCCCGGGCCACCCGCGGGAAGACGCAC
CTAAGCCCTAGCCCGTTTCTTGCCGAGATCCTGGGGGATGACGCCCCGCG
GGAGTGGAAAACGGCGATTGAGACGCCGAAGGATCAAGAGGACCGCTTAC
ACTTTCTGGTGGACGAGGATGCTGCTGCGCCCGGGGTCAGCATAGACGCA
GCGACGAAGGTCGTTGAGGGGGGGTATGCCACCGTTGCCGGGAGGCTCAA
GTCCGCGTCGCCGTCGCCGGCGGCGGTGGCGCTCCGGCTGTCCTTCTCTT
CCATTTCGTCGTTTGCGGCGTGCCCGCACAGCTACTTCCTCCAGCACGTG
CTTAACGTGTCCCCTCCGCCGAACCCGCGAATGGTGTACGGCCGAGCGAT
GCACGAGGGGGTCGCCGCGTTGCTGCGTGGCGTGGCGAGCGGGGGCCGGG
GGGCTGGCTCGCCCCCGACCCTAGAAGCCGTGGTGGAAGACTTCAGCCGA
CACCTTGGGGGATGCGCGTTCGAGTCGGCGGACCAGCTGCGCACGCTGAG
GGCGGCTGGCGTGGCCGGCTTGGAATCGTTCATGTCTAGGCTCATCGAGG
GCAGACGCTGCGCGGCCGGGGCGGGCTCTGGTCACAACTCGCAACCGCGT
CAGCTCCTCGTGGAACGCAAGTTTATGGTGAAGATTCCGGAGGCGAGCGT
CGTGCTCTCAGGAATTTTCGACAGGGTGGACATCGAGGCGGCTGTCGGCG
GGGGCTCTTCGCACCCTAGGTTGCTCTCCATAACGGACTACAAATCGAAC
GTCGGCGCGAAAGTCCCAAGTCGAATGGTCCGGGACAACCTCCAGCTCCG
GATCTACGCGCTCGCGGCCGAGCGGCTGTTTGGAACTACACCGACCGAGA
TAGCGATAGAGTCGATAGAGGACGGGCGTAGGGGGGTAGCGGTGCCGCTT
GCGGCCGACGCGGAGATTGCCTTGGAGGCAATTTCCGCCACGGCGACGGC
GGTTCGCGCGGAGCGGTTCGAGGCCACCCCGTCTTTCCAGGCGTGCACTT
TCTGCAGCTTCAAGCACATGTGCCAGCACTCGGTCGTCGCAAATGCAGCC
CTTTAG
back to top