mRNA_Ecto-sp13_S_contig12007.1722.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12007.1722.1
Unique NamemRNA_Ecto-sp13_S_contig12007.1722.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12007.1722.1 vs. uniprot
Match: A0A6H5KPH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH5_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.470e-42
Identity = 82/95 (86.32%), Postives = 87/95 (91.58%), Query Frame = 3 
Query:  270 MPSRGSFTSRRSGNIMEGGNAQGGGMFGSKGGPGSKRQRVAFWQLALAASALVLLGLNVGAVLNSNFPSTSDKAAERPSFGEVPHKMGDIGGADG 554
            MPSRGSF SRRSGN+MEGGNAQGGG+FGS  GPGSKRQRVA WQLALAAS L+LLGLNVGAVL+SNFPS S KAAERPSFGEVPHK+G IGGADG
Sbjct:    1 MPSRGSFISRRSGNMMEGGNAQGGGIFGSNEGPGSKRQRVALWQLALAASVLILLGLNVGAVLSSNFPSASGKAAERPSFGEVPHKVGGIGGADG 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12007.1722.1 vs. uniprot
Match: D8LPR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR2_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.230e-41
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 3 
Query:  312 IMEGGNAQGGGMFGSKGGPGSKRQRVAFWQLALAASALVLLGLNVGAVLNSNFPSTSDKAAERPSFGEVPHKMGDIGGADGG 557
            +MEGGNAQGGGMFGSKGGPGSKRQR+AFWQLALAASAL+LLGLNVGAVLNSNFPST DKAAERPSFGEVPHKMGD+GGADGG
Sbjct:    1 MMEGGNAQGGGMFGSKGGPGSKRQRLAFWQLALAASALILLGLNVGAVLNSNFPSTPDKAAERPSFGEVPHKMGDVGGADGG 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12007.1722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPH5_9PHAE3.470e-4286.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPR2_ECTSI1.230e-4193.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12007contigEcto-sp13_S_contig12007:801..5000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size560
Hectar predicted targeting categoryother localisation
Exons4
Cds size441
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.0171442-UTR-Ecto-sp13_S_contig12007:800..8611681462638.0171442-UTR-Ecto-sp13_S_contig12007:800..861Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12007 801..861 -
1681462638.0269494-UTR-Ecto-sp13_S_contig12007:1136..11921681462638.0269494-UTR-Ecto-sp13_S_contig12007:1136..1192Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12007 1137..1192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.036809-CDS-Ecto-sp13_S_contig12007:1192..12701681462638.036809-CDS-Ecto-sp13_S_contig12007:1192..1270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12007 1193..1270 -
1681462638.0487204-CDS-Ecto-sp13_S_contig12007:4141..44301681462638.0487204-CDS-Ecto-sp13_S_contig12007:4141..4430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12007 4142..4430 -
1681462638.0606003-CDS-Ecto-sp13_S_contig12007:4926..50001681462638.0606003-CDS-Ecto-sp13_S_contig12007:4926..5000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12007 4927..5000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12007.1722.1prot_Ecto-sp13_S_contig12007.1722.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12007 1193..5000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12007.1722.1

>prot_Ecto-sp13_S_contig12007.1722.1 ID=prot_Ecto-sp13_S_contig12007.1722.1|Name=mRNA_Ecto-sp13_S_contig12007.1722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
TTFVSHARNNTCGKRLDSTPREKGSGDTALRRITHDLVSALASTHSHETF
SSNCGKGKGVRQIATNATTRVCQDTPRLALAAGGGGIRGACQVEGVSPAV
ARVTSWREGMRREVACLAAREGRVRSGKEWRSGSWRSRRRRWSSWD*
back to top

mRNA from alignment at Ecto-sp13_S_contig12007:801..5000-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12007.1722.1 ID=mRNA_Ecto-sp13_S_contig12007.1722.1|Name=mRNA_Ecto-sp13_S_contig12007.1722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4200bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12007:801..5000- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTACATTCGTTTCACACGCACGAAACAACACGTGCGGGAAGAGGTTGGA
CAGCACCCCACGAGAGAAAGGCAGGTAAGAGGAACTTGACCACGCAAGCC
CAGCAGAAGAAGAGTGTACGTGGCCTGCGCTGGTGGGGAATATCCAGCAC
TTTTGGTCTCAAGAGACACCGCCAAGAGAGGAAGAGGTTTTCCTCTGGAC
CCGCTGTGCTGAGAAGCTGCTGTAGATGCCGACGAGTGTGTTGTGAGGAG
ACATTGGCTACCGTTGAGCCTTTAATCGATAGGGTCAAGTACGAGTGCAG
CAGGGTGTGTGCGTAGGCGTGACAGCAGTAGGAGTACCCACGCTTATCCT
TCGATGGGTAGATGAAGCACTGCAGCTGCTGCCGCCGTACTTTTTGTTCT
GCGCGAGAGACCGGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGATTGAG
AGAGATACAGAGCAGCATTCTTCCGTTTTATGGTACGGAGGGGTCGCCAG
TGGGCAGGTTGAGTGATGCCGTCGGCCTTGACACTGACTCATGACCCGCC
CTCCCCTCATCCGTACTCAGCGGCGATACGGCTCTCCGAAGAATCACGCA
CGACCTGGTCTCTGCGCTCGCAAGCACGCACTCACACGAGACATTTTCAT
CAAATTGCGGGAAGGGGAAAGGTGTGAGACAGATCGCTACAAACGCAACT
ACGAGGGTGTGCCAAGACACCCCGAGGCTCGCGTTGGCTGCTGGGGGTGG
GGGGATTAGGGGGGCATGCCAAGTCGAGGGAGTTTCACCAGCCGTCGCTC
GGGTAACATCATGGAGGGAGGGAATGCGCAGGGAGGTGGCATGTTTGGCA
GCAAGGGAGGTGAGAGACACGCCAAGAGAAAGAGAGAATCTAGGAGGTTG
TCTCTCTGCTGTCTCCCCACACCCGATTGATTTTTGTCCACCAACGGGAA
AAATCAACCTACAGAACCAAAATCGACAATCGACAGCAAATCCCCTAGGT
TGTTTCGTTTCCAACCTGTGTGTCTTTTCGAGGCGGCTCCCGTCTCTTCT
GCGTATTGAGAGAGAGAGCTGCGTGTATGGCACAAGCTGCCTGGGGCAGT
GAGCATCACACAGCACCCCGGACAAATCAGTTACGGTATTTCCGCAATCG
GAAGGTGGCTCCATTCTCTCTGAGACAGGTTTCGTTTTTTTACCGTCCCC
TCTCTGTGGGCAAAGCCGACCGGGCATGGAGAATTTTTTTGTTGTCGTTG
TGGCAGCCACCCATGTTGGTTGTCTAACTTGCATCGCACACGCCTTGTCA
AGTCTGCCGACGAGGAGCGACTGCTGAAGGCTATTTGTCCTTCGCCTCGC
TGTTTATTTCGCCAGATCGGGTGGTGGGCAACCGTGTTTTTTTTTTGTGG
CGCGGGGAATTTCGGAATTCAAGCGAACAGCCAAAACTCTCGAGCGGAAA
ATATTTGCATCAAGGGTGCGTCGCACACCCCAGTGCAAGATGCCTCGCCG
TGGAGTTTTTACGGGCTGATCGGTTACGTTATGTTCCGAACGAAGCAAAC
ATAAACATTTACGCCTTGTCCGTTACTGCTGTGCTATTACCTTGGTATTC
AGTTCGCACTTTTAGTGCCTTGGCGTGCATGCTCCAATGATCATCATCGC
GCCTCTCACAATCAATGCGCGGCGTTGTTCACGAACACATTTTTTCCAGA
GAGCGAGCACGCTTCCGACAGCATTGTGGGTTCGACAGGACGATAATAAT
ATTGAATTGAGTGTTCTCAGGTGTTCGGAACCAGCAGCCGCGACTGCGTA
CGCTGGTAGCGGGGCGCACACCCTCATCGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTCCTGCTCCTCAATTGTACCACAC
CACACTCAAGACATCCGGTTCGAGACAGAGCTTTACGACAGGAGTCGTCT
CTATGACAACCGGTGTCCTTCGAGGGAGGTATTTGCCTCTCCAGCTCAAT
CACGAATCACGTATTCGCTCCAAAAACCGGCAACATTTGGCGTGTATATT
GCGACATGCTTGAGTGAGAGCCGGCGTGGGCGACGGCGGTGTACAAGGTA
TCACGATCGTGTTTGTTGTTGATCCACACCAGCAGCAGTTTTTTTGCCCG
CAAAGTGGTCATGTGTGTGAACAAGGTTTGTTTCTGGTCGAGCGACTCGG
AATTAAATGTGCCCTTCCGAGTCGTGCTCTGTGTTGATGGCATCTCCCCT
CCCCCCCCTACCGAGAGGAAGGTTCGCCACCGTATGGCATACATCAGAGT
AGTACGGTGGAGTAACGATCACCCCGAGACGGAGGAGAATCACCGCCTCG
GAGTAATTTTTACCAGTTCGCTCAAAGAGACGAAGTAGATGCCATACGAT
TGCATGATTGCCGGCTTAAATAGCCCCCCGTCTGGCTATCCCGGCTATGG
TGCCTCTGGGCACCACTCTCCGGCATCTCGCGCACTACGTGGAATAATTT
TTCGTCCGATCATAACTAACTCGTGGTAGCATAGTTGCGCTGCGAACAGC
GGCTAGGCAAGCGCCGTCTCCACCGCAGCCCACCAATTATTTGGGGATAC
ATGCATACATCATGGTTTTTGTATGTTGGATTTTAACCGTTTGTGCTGGC
TGTTGTGCAGCCTTGGAGCGGCACACATGCATATGCATACCGCCAGGTGC
TGCTCAGACTCATCGACATTCGTCCATCATTTGCATGAACCCGCAACAGA
ACGCCAAGGGCTTTGGTAAAGCATATTTCCTCCTACATCTAGGGAACATG
CATACCACAATTTTAGCAAAGAAAGATTATCCGCCTTTGTAGTTCAGCGA
CAATACCCCGAACGAGGCACGTATGTTTGAGAGGCTTTTCAGTGGGCGTT
GAGGAACTACCTTTCTCTCGCCGCGGTCGCGGAAGACGGCAAGTCGAGGA
TCTAGTCGTTCGCCCTTCCGCCGTTCACGCCGATCTATAGACCAGGGTGT
TGCGGATACGCACACATACTGCTTTTTTGTAGTAATTTTTTCTTAAATTA
TTTTTCCTCCGACAACTAAATTTTGTATTACGCCTCCTGGTGCCTCGAGT
GGTTTCGGTGCTTACGATGGATGACCTGTAAAGGACCCCGACACTGGGAG
GGACGGCGTCTCATCCCTCGGCGAACGAACGAGGTTACGTACATGGTGCT
AGGCGCCCTCCCGCCCTATGCACGTGTATCTCCCATTTTTGTGCTCCTCC
GTCTTCATGGACCCCACCGGCGTCGGCCCAAGCCGCGTTAGCGTTAGGAC
GTTGCCTGTTGCTGCCCCGCGATACAACCTCACTCTCAACGGTTGTTGTG
TGCGTTCCCCCTCTCTCTTTCTCATTCAAGGGCCGGGTTCGAAGCGGCAA
AGAGTGGCGTTCTGGCAGCTGGCGCTCGCGGCGTCGGCGTTGGTCCTCTT
GGGATTGAATGTCGGCGCCGTGCTTAACTCCAACTTTCCTTCGACATCGG
ATAAGGCTGCGGAGGTGCGTACCCTAGTAGCAACAGCAGCAGGTGGCGGT
GTTGTTCCTTTTTTTTCTTTCACCGTTGCATGCACACGAGCCAATGAAGA
CGGCATAATGTCGGGTCTTCTGGGGTACGAGACGCTACTGGAACGCCTGT
TGTTTGTGTGTCTCCATTGACCTCTCCCTGCTCAAGATTGTGTTTCGCAC
CATATGCTTTGTTCAGCTCTTCCCCCAAGAGTTTCTTGACGCGCAACCTT
TCATTGATACTACTTCGACAACGACTACGGCAACTGCAGCGACCATCGTT
CGGCGAGGTCCCTCACAAGATGGGGGACATCGGTGGCGCCGACGGAGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12007:801..5000-

>mRNA_Ecto-sp13_S_contig12007.1722.1 ID=mRNA_Ecto-sp13_S_contig12007.1722.1|Name=mRNA_Ecto-sp13_S_contig12007.1722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12007:801..5000- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTACATTCGTTTCACACGCACGAAACAACACGTGCGGGAAGAGGTTGGA
CAGCACCCCACGAGAGAAAGGCAGCGGCGATACGGCTCTCCGAAGAATCA
CGCACGACCTGGTCTCTGCGCTCGCAAGCACGCACTCACACGAGACATTT
TCATCAAATTGCGGGAAGGGGAAAGGTGTGAGACAGATCGCTACAAACGC
AACTACGAGGGTGTGCCAAGACACCCCGAGGCTCGCGTTGGCTGCTGGGG
GTGGGGGGATTAGGGGGGCATGCCAAGTCGAGGGAGTTTCACCAGCCGTC
GCTCGGGTAACATCATGGAGGGAGGGAATGCGCAGGGAGGTGGCATGTTT
GGCAGCAAGGGAGGGCCGGGTTCGAAGCGGCAAAGAGTGGCGTTCTGGCA
GCTGGCGCTCGCGGCGTCGGCGTTGGTCCTCTTGGGATTGA
back to top