mRNA_Ecto-sp13_S_contig12006.1721.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12006.1721.1
Unique NamemRNA_Ecto-sp13_S_contig12006.1721.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Match: D8LQP2_ECTSI (Nonribosomal peptide synthetase 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP2_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 6.970e-82
Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 1
Query:    1 TRVKPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSKGLG 393
            TR+KPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVP+GVAWQIDVTPVDFAARAIVHVAVD+PSKGLG
Sbjct: 1096 TRMKPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPDGVAWQIDVTPVDFAARAIVHVAVDRPSKGLG 1226          
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Match: A0A6H5KPG7_9PHAE (NAD_binding_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG7_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 3.410e-71
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 1
Query:   73 MEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSKGLG 393
            MEDADMSEQWKELSDGYGQSKWVAEQMC+QARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSK LG
Sbjct:    1 MEDADMSEQWKELSDGYGQSKWVAEQMCMQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSKILG 107          
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Match: A0A836CH82_9STRA (Male sterility protein-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH82_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.550e-52
Identity = 82/133 (61.65%), Postives = 102/133 (76.69%), Query Frame = 1
Query:    1 TRVKPVHFVSTNGVFPFSSETKTFMEDAD-MSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVA-WQIDVTPVDFAARAIVHVAVDQPSKGLG 393
            TRVKPVH+VSTNGVFPF +       + D +SE W +L+DGY Q+KWVAE MC +AR RGLP+SILR GNM+PS+ TGAWN +DF+Y+ L+ C  LGC P+  A W++D+TPVD+AARAIVH AV  PSK LG
Sbjct:  210 TRVKPVHYVSTNGVFPFGAGAPARRREGDDLSEIWPQLTDGYAQTKWVAEAMCAEARRRGLPLSILRCGNMAPSSATGAWNGADFMYLALRACAQLGCAPDAAAGWKVDMTPVDYAARAIVHCAVTDPSKALG 342          
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Match: M4BAT0_HYAAE (NAD_binding_4 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAT0_HYAAE)

HSP 1 Score: 173 bits (438), Expect = 2.320e-50
Identity = 79/131 (60.31%), Postives = 100/131 (76.34%), Query Frame = 1
Query:    1 TRVKPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSKGLG 393
            TRVKPVH++STNGVF  +     F+E AD+S+   +L +GY QSKWV+EQMC++A  RGLPVSILRPGNM+PS+ TG WN +DFIY+LL+GC+ LG VP+   W  D+TPVD+AARAIVH A  +P   LG
Sbjct:  140 TRVKPVHYISTNGVFSSAMAASKFVETADLSDISDQLDNGYAQSKWVSEQMCLEAAHRGLPVSILRPGNMAPSSLTGEWNANDFIYLLLKGCMSLGAVPDRSDWYFDMTPVDYAARAIVHFAACRPIDALG 270          
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Match: A0A225VJU7_9STRA (L-aminoadipate-semialdehyde dehydrogenase large subunit (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VJU7_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.190e-49
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 1
Query:    1 TRVKPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSKGLG 393
            TRVKPVH+VSTNGVFP +     F+E AD+SE   +L +GY QSKWV+EQMC +A  RGLPVS+LRPGNM+PS+ TG WN SDFIY+LL+GC  LG VP    W  D+TPVD+AAR IVH A  +P++ LG
Sbjct:  289 TRVKPVHYVSTNGVFPSTLAAPKFLETADLSEMSDQLDNGYAQSKWVSEQMCHEAAHRGLPVSVLRPGNMAPSSLTGQWNSSDFIYLLLKGCASLGAVPARSDWFFDMTPVDYAARTIVHFAALRPAEALG 419          
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Match: K3WR86_GLOUD (Carrier domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WR86_GLOUD)

HSP 1 Score: 177 bits (450), Expect = 4.000e-49
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = 1
Query:    1 TRVKPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSKGLG 393
            TRVKPVH++STNGVFP S    TF+E A++ E  + L +GY QSKWVAEQMC +A  RGLPVSILRPGNM+PS+T+G WN SDFIY+LL+GC ++G VP    W+ D+TPVDFAARAIVH A   P   LG
Sbjct: 1075 TRVKPVHYISTNGVFPSSFAAPTFLETANLKEISEHLENGYAQSKWVAEQMCDEAAQRGLPVSILRPGNMAPSSTSGEWNTSDFIYLLLKGCWEIGAVPSRPDWRFDMTPVDFAARAIVHFAALHPVTSLG 1205          
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Match: A0A484EES2_BRELC (Carrier domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EES2_BRELC)

HSP 1 Score: 177 bits (450), Expect = 4.000e-49
Identity = 83/131 (63.36%), Postives = 99/131 (75.57%), Query Frame = 1
Query:    1 TRVKPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSKGLG 393
            TRVKPVH++STNGVFP +S T  F E AD+SE   EL +GY QSKWVAE+MC +A  RGLPVSILRPGNM+PS++TG WN SDF+Y+LL+GC DL  VP    W  D+TPVD+AARAIVH     P + LG
Sbjct: 1076 TRVKPVHYISTNGVFPSTSNTPIFFESADISELSDELENGYAQSKWVAERMCQEAALRGLPVSILRPGNMAPSSSTGQWNSSDFMYLLLKGCADLNAVPACSDWYFDMTPVDYAARAIVHFTALHPKEALG 1206          
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Match: G5AF40_PHYSP (Carrier domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G5AF40_PHYSP)

HSP 1 Score: 176 bits (445), Expect = 1.880e-48
Identity = 83/131 (63.36%), Postives = 99/131 (75.57%), Query Frame = 1
Query:    1 TRVKPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSKGLG 393
            TRVKPVH++STNGVFP +     F+E AD+SE   +L +GY QSKWVAEQMC +A  RGLPVSILRPGNM+PS+ TG WN SDFIY+LL+GC  LG VP    W  D+TPVD+AARAIVH A  +P + LG
Sbjct: 1069 TRVKPVHYISTNGVFPSTLAAPKFLETADLSELSDQLENGYAQSKWVAEQMCHEAAQRGLPVSILRPGNMAPSSLTGQWNASDFIYLLLKGCASLGAVPARSDWFFDMTPVDYAARAIVHFAALRPVEALG 1199          
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Match: W2R2G2_PHYPN (Carrier domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2R2G2_PHYPN)

HSP 1 Score: 173 bits (439), Expect = 1.210e-47
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 1
Query:    1 TRVKPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSKGLG 393
            TRVKPVH++STNGVFP +     ++E AD+SE   +L +GY QSKWV+EQMC +A  RGLPVSILRPGNM+PS+ TG WNPSDFIY+LL+GC  L  VP    W  D+TPVD+AARAIVH A   P + LG
Sbjct: 1075 TRVKPVHYISTNGVFPSTLSAAKYLETADLSELSDQLENGYAQSKWVSEQMCHEAAHRGLPVSILRPGNMAPSSVTGQWNPSDFIYLLLKGCAGLCAVPARSDWYFDMTPVDYAARAIVHFAALHPVEALG 1205          
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Match: A0A8J5J1S2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J1S2_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.230e-47
Identity = 82/131 (62.60%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    1 TRVKPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQMCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPEGVAWQIDVTPVDFAARAIVHVAVDQPSKGLG 393
            TRVKPVH++STNGVFP +     F+E AD+SE   +L +GY QSKWVAEQMC +A  RGLPVSILRPGNM+PS+ TG WN SDFIY+LL+GC  LG VP    W  D+TPVD+AA AIVH A   P + LG
Sbjct: 1075 TRVKPVHYISTNGVFPSTLAAPKFLETADLSELSDQLENGYAQSKWVAEQMCHEAAHRGLPVSILRPGNMAPSSLTGQWNASDFIYLLLKGCAGLGAVPARSDWYFDMTPVDYAAHAIVHFAALHPVEALG 1205          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12006.1721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQP2_ECTSI6.970e-8297.71Nonribosomal peptide synthetase 10 n=1 Tax=Ectocar... [more]
A0A6H5KPG7_9PHAE3.410e-7198.13NAD_binding_4 domain-containing protein n=1 Tax=Ec... [more]
A0A836CH82_9STRA3.550e-5261.65Male sterility protein-domain-containing protein (... [more]
M4BAT0_HYAAE2.320e-5060.31NAD_binding_4 domain-containing protein n=1 Tax=Hy... [more]
A0A225VJU7_9STRA1.190e-4961.83L-aminoadipate-semialdehyde dehydrogenase large su... [more]
K3WR86_GLOUD4.000e-4963.36Carrier domain-containing protein n=1 Tax=Globispo... [more]
A0A484EES2_BRELC4.000e-4963.36Carrier domain-containing protein n=1 Tax=Bremia l... [more]
G5AF40_PHYSP1.880e-4863.36Carrier domain-containing protein n=6 Tax=Phytopht... [more]
W2R2G2_PHYPN1.210e-4761.83Carrier domain-containing protein n=12 Tax=Phytoph... [more]
A0A8J5J1S2_9STRA1.230e-4762.60Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12006contigEcto-sp13_S_contig12006:3604..5204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score271.9
Seed ortholog evalue1.5e-70
Seed eggNOG ortholog2880.D8LQP2
Model size393
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.phosphopantetheine binding
EggNOG OGsCOG1020@1,KOG1178@2759
Cds size393
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.95989-CDS-Ecto-sp13_S_contig12006:3603..37261681462637.95989-CDS-Ecto-sp13_S_contig12006:3603..3726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12006 3604..3726 -
1681462637.9752405-CDS-Ecto-sp13_S_contig12006:4583..47951681462637.9752405-CDS-Ecto-sp13_S_contig12006:4583..4795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12006 4584..4795 -
1681462637.9849622-CDS-Ecto-sp13_S_contig12006:5146..52041681462637.9849622-CDS-Ecto-sp13_S_contig12006:5146..5204Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12006 5147..5204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12006.1721.1prot_Ecto-sp13_S_contig12006.1721.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12006 3604..5204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12006.1721.1

>prot_Ecto-sp13_S_contig12006.1721.1 ID=prot_Ecto-sp13_S_contig12006.1721.1|Name=mRNA_Ecto-sp13_S_contig12006.1721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
TRVKPVHFVSTNGVFPFSSETKTFMEDADMSEQWKELSDGYGQSKWVAEQ
MCVQARSRGLPVSILRPGNMSPSATTGAWNPSDFIYMLLQGCLDLGCVPE
GVAWQIDVTPVDFAARAIVHVAVDQPSKGLG
back to top

mRNA from alignment at Ecto-sp13_S_contig12006:3604..5204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12006.1721.1 ID=mRNA_Ecto-sp13_S_contig12006.1721.1|Name=mRNA_Ecto-sp13_S_contig12006.1721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1601bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12006:3604..5204- (Ectocarpus species13 EcNAP12_S_4_19m)
ACACGCGTGAAGCCTGTTCACTTCGTTTCCACGAACGGCGTTTTCCCCTT CTCTTCCGGTACGGTATAGAAGAAACGAGCGATAATATAGGATAGGCTAG GATAGGCTAGAATAGGGTAGGATACGATGAGGATTTCTTGTTGTCACTAA CTCGTGGTTGCTGCTGTCTCTGTTGTTGTTTGTGCTGAGGTGTTGATCGG TGGTCGTGGTTGCTGTTGTTGTTCCTGCTGCTGCTTTCGCTGTTTCGTGA TGTTTGGTTGTTGTTGCCGTCGTCATTTGTTTTTGGGTTGTTTGGGTTGC GATTTTCGTTGCAGTGGTGTTTGCTGCTGTCGCACATGGCTGCTGCCATT GACGCCCACTACCCCCCGTCGTATTTTTTATAACTTACGCACGTCCACGT TGCGTGAAGAGACGAAGACGTTCATGGAAGACGCCGACATGAGCGAACAG TGGAAAGAGCTGAGCGACGGCTACGGGCAGAGCAAGTGGGTAGCGGAGCA GATGTGCGTGCAAGCGAGGTCGAGGGGACTCCCCGTAAGCATCTTGAGGC CTGGGAATATGTCCCCCTCTGCGACAACAGGGGCGTGGAACCCTTCGGAC TTCATCTACATGCTGCTCCAGGTGTGTTGTTGTTGGTGGTGGTGGTGATG ATGATGGTGCTGCCGCCGCTTATTTTTGTTGCTGGTGCTAGTGCTGATGC TGGTGCTGATCATGGTGGCTGTGCTGCTGTGTTTCTGTTGATGTTGCACG TGCGTTGCTGTTGATTTTGCAGGTGTGTTGTTACTGTTGTTGTTGCTGAT GGCTCTTGTGTGCTCACACGAAAGGATGGCTTCCCTACCGCTGCCTGCAA TGTTGATTCTTTCGACGAGTCCGTTACCTGAAACAAGCGATTGCGGAATC CGTCGTTATCGAGTATTCTCAAGTTTCAACCCATGGTCAAATGGCCCAGA ATTCTTGCACCTATTCATGGTTGTTGCAATGGTCGCAGTCCAGTCAGGAC ATTACTTGAGTTGGTGGCTGACGGGTTCCGTCCCGTTCCACGGGAGCTCT AACCTACCTTACCGTGGTATGTACCATGGTGTGTGACTTGTACGGTGGTG TCGAGAAGTGTGTTGTGTGGTTTCAAATTGCTGCCGGCGGGTACTGTAGA CATCGACGACAGGCGTACACGGCGTGTTCGTGAGACGTATTTTGTTTGTG GCTACTCTTCTATTATCATCTTCCGCTTACCATCGAAGTGTATGCAACCC TTACATTAGCTCGTACACGTGCTAAGAAGATGTTTTGCTCGTTAAGCTTA ATAGGACGTGTGACCGTACTGTTTTCCATTTCAACCGCAGCGATGAAGCC AAACCCACTCTTTCGTCCCTGGCTACTGTGCCTCTCGCCCTAACCCTTGC CGCTGTTGTAATCGCCGGTGGTGCTATCACTTGGCGGTGATTTGTTTGTT GTCGCTGTCGCGCTTTGGTCGGCAACAGGGCTGTCTCGACTTGGGCTGCG TTCCCGAGGGGGTTGCCTGGCAAATTGACGTCACCCCCGTGGACTTCGCC GCTCGGGCCATCGTGCACGTGGCCGTCGACCAGCCAAGCAAGGGACTTGG A
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12006:3604..5204-

>mRNA_Ecto-sp13_S_contig12006.1721.1 ID=mRNA_Ecto-sp13_S_contig12006.1721.1|Name=mRNA_Ecto-sp13_S_contig12006.1721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12006:3604..5204- (Ectocarpus species13 EcNAP12_S_4_19m)
ACACGCGTGAAGCCTGTTCACTTCGTTTCCACGAACGGCGTTTTCCCCTT
CTCTTCCGAGACGAAGACGTTCATGGAAGACGCCGACATGAGCGAACAGT
GGAAAGAGCTGAGCGACGGCTACGGGCAGAGCAAGTGGGTAGCGGAGCAG
ATGTGCGTGCAAGCGAGGTCGAGGGGACTCCCCGTAAGCATCTTGAGGCC
TGGGAATATGTCCCCCTCTGCGACAACAGGGGCGTGGAACCCTTCGGACT
TCATCTACATGCTGCTCCAGGGCTGTCTCGACTTGGGCTGCGTTCCCGAG
GGGGTTGCCTGGCAAATTGACGTCACCCCCGTGGACTTCGCCGCTCGGGC
CATCGTGCACGTGGCCGTCGACCAGCCAAGCAAGGGACTTGGA
back to top