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Homology
BLAST of mRNA_Ecto-sp13_S_contig11996.1702.1 vs. uniprot
Match: D7G295_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G295_ECTSI) HSP 1 Score: 519 bits (1336), Expect = 1.050e-182 Identity = 294/362 (81.22%), Postives = 300/362 (82.87%), Query Frame = 1
Query: 1 PPISPMAEELIRARDVQHGRHRHGSQQPEEPAQVLPQPRGHDFKFFIHSIFDNNNGRGDPTLVFTRATVGHHNINGYGHNFEEKLTEKDTHAPWDAGTKRVVTKMNMDGMALLVRSEVDACDGTGSTRLVPEAKGRASSXXXXXXXXXXCESTSAKADAKSMEDLLVEQLDGLGLSSXXXXXXGTSEFEPASGLTCEKRGKLLGHDAKVLELKTKNSRYAAEINWKDIYWQLALGGAHALVLGLHNRGTFGAGDMRHHSIGEVKTRAEESGSASMVFLANTLRGITKAAHRIIGAPSTARTRPAAPPTPSAVPGETG---TRGESNPRVAAAAAVVVEYSPGRDSRRICIRLATAADGAAPP 1077
PPISPM EELIRARDVQHGRHR GS QPEEPAQVLPQPRGHDFKF IHSI D+N G GDPTLVFTRATVGHHNINGYGHNFE+KLTEKD HAPWDAGT RVVTKMNMDGMALLVRSEVDACDGTGSTRLVP KGRAS XXXXXXXXXX AKS EDLLVEQL GLGLSS G SE +PASGLTCEKRG+LLGHDAKVLELKTKNSRYA EI+WKDIYWQL LGGAHALVLGLHNRGTFGAGD +HHSIGEVK RAEESGSASMVFLANTLRGITKAAHRIIGA ST R T GESNPRVAAAAAVVVEYSPGRDSR I IRLATAADGA P
Sbjct: 2 PPISPMTEELIRARDVQHGRHRDGSPQPEEPAQVLPQPRGHDFKFIIHSIGDSN-GHGDPTLVFTRATVGHHNINGYGHNFEKKLTEKDPHAPWDAGTFRVVTKMNMDGMALLVRSEVDACDGTGSTRLVPAGKGRASXXXXXXXXXXXX--XXXXXXAKSTEDLLVEQLGGLGLSSSSPGGEGKSESKPASGLTCEKRGQLLGHDAKVLELKTKNSRYANEISWKDIYWQLTLGGAHALVLGLHNRGTFGAGDTKHHSIGEVKARAEESGSASMVFLANTLRGITKAAHRIIGAASTTPARXXXXXXXXXXXXXXXXXXTHGESNPRVAAAAAVVVEYSPGRDSRCIRIRLATAADGAVSP 360
BLAST of mRNA_Ecto-sp13_S_contig11996.1702.1 vs. uniprot
Match: A0A6H5KRV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV4_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 5.550e-19 Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 1
Query: 313 MNMDGMALLVRSEVDACDGTGSTRLVPEAKGRASSXXXXXXXXXXCESTSAKADAKSMEDLLVEQLDGLGLS 528
MNMDGMAL VRSEVDACDGTGSTRLVPE GRASSXXXXXXXXXX + SAKADAKS EDLLVE+L GLGLS
Sbjct: 1 MNMDGMALYVRSEVDACDGTGSTRLVPEGTGRASSXXXXXXXXXXXXN-SAKADAKSTEDLLVERLGGLGLS 71
BLAST of mRNA_Ecto-sp13_S_contig11996.1702.1 vs. uniprot
Match: A0A8K0UEH8_9AGAM (Uncharacterized protein n=1 Tax=Cristinia sonorae TaxID=1940300 RepID=A0A8K0UEH8_9AGAM) HSP 1 Score: 70.9 bits (172), Expect = 1.190e-9 Identity = 58/176 (32.95%), Postives = 84/176 (47.73%), Query Frame = 1
Query: 223 NGYGHNFEEKLTEKDTHAPWDAGTKRVVTKMNMDGMALLVRSEVDACDGTGSTRLVPEAKGRASSXXXXXXXXXXCESTSAKADAKSMEDLLVEQLDGLGLSSXXXXXXGTSEFEPASGLTCEKRGKLLGHDAKVLELKTKNSRYAAEINWKDIYWQLALGGAHALVLGLHNRGTF 750
N +G+NFE+ T +G R++ K +MDG+AL+VR EVDAC P K + ++ ST+ + A S D L + L GL +SS T+ + +T + G + A ++EL T++ R AA NW D Y QL L VLG+H RG F
Sbjct: 526 NTFGYNFEKAHTTPVAGCEGSSGHHRII-KYDMDGLALVVRFEVDAC--------TPRPKSKVTA------------STNEVSPAVSNVDDLSDLLSGLNVSSQTSATADTTTS--TADITIVRAGYEVPQSA-IMELTTRSERNAANFNWDDSYPQLWLSQTSQHVLGVHARGNF 677
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 511.1 |
| Seed ortholog evalue | 4e-142 |
| Seed eggNOG ortholog | 2880.D7G295 |
| Model size | 1083 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| EggNOG OGs | 2CIRU@1,2SG1W@2759 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-16_001990.1 |
| Cds size | 1068 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462636.2438977-UTR-Ecto-sp13_S_contig11996:548..563 | 1681462636.2438977-UTR-Ecto-sp13_S_contig11996:548..563 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig11996 549..563 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462636.2534316-CDS-Ecto-sp13_S_contig11996:563..599 | 1681462636.2534316-CDS-Ecto-sp13_S_contig11996:563..599 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11996 564..599 + |
| 1681462636.2689424-CDS-Ecto-sp13_S_contig11996:1504..1576 | 1681462636.2689424-CDS-Ecto-sp13_S_contig11996:1504..1576 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11996 1505..1576 + |
| 1681462636.2772722-CDS-Ecto-sp13_S_contig11996:2022..2211 | 1681462636.2772722-CDS-Ecto-sp13_S_contig11996:2022..2211 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11996 2023..2211 + |
| 1681462636.2877471-CDS-Ecto-sp13_S_contig11996:2695..2944 | 1681462636.2877471-CDS-Ecto-sp13_S_contig11996:2695..2944 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11996 2696..2944 + |
| 1681462636.2982743-CDS-Ecto-sp13_S_contig11996:3345..3437 | 1681462636.2982743-CDS-Ecto-sp13_S_contig11996:3345..3437 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11996 3346..3437 + |
| 1681462636.310712-CDS-Ecto-sp13_S_contig11996:3937..4070 | 1681462636.310712-CDS-Ecto-sp13_S_contig11996:3937..4070 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11996 3938..4070 + |
| 1681462636.321758-CDS-Ecto-sp13_S_contig11996:4716..5013 | 1681462636.321758-CDS-Ecto-sp13_S_contig11996:4716..5013 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11996 4717..5013 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11996.1702.1 >prot_Ecto-sp13_S_contig11996.1702.1 ID=prot_Ecto-sp13_S_contig11996.1702.1|Name=mRNA_Ecto-sp13_S_contig11996.1702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=356bp
MAEELIRARDVQHGRHRHGSQQPEEPAQVLPQPRGHDFKFFIHSIFDNNN GRGDPTLVFTRATVGHHNINGYGHNFEEKLTEKDTHAPWDAGTKRVVTKM NMDGMALLVRSEVDACDGTGSTRLVPEAKGRASSSGGGGGGGGGCESTSA KADAKSMEDLLVEQLDGLGLSSSSSGGGGTSEFEPASGLTCEKRGKLLGH DAKVLELKTKNSRYAAEINWKDIYWQLALGGAHALVLGLHNRGTFGAGDM RHHSIGEVKTRAEESGSASMVFLANTLRGITKAAHRIIGAPSTARTRPAA PPTPSAVPGETGTRGESNPRVAAAAAVVVEYSPGRDSRRICIRLATAADG AAPPS* back to topmRNA from alignment at Ecto-sp13_S_contig11996:549..5013+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig11996.1702.1 ID=mRNA_Ecto-sp13_S_contig11996.1702.1|Name=mRNA_Ecto-sp13_S_contig11996.1702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11996:549..5013+ (Ectocarpus species13 EcNAP12_S_4_19m) CCCCCGATATCGCCCATGGCTGAAGAACTTATTCGCGCTCGTGATGTTCA
GGTGTGTGTGTGTGAGCTGGGAGCATGGCGTACAGTCTACACCTTCGACG
CAAAGGATGCATAATAGTCTGCGCAAGGCAGTTAGTTCCTTGTGCCACAG
ATTTCCATATCACAGCAAACTTTATTTTGTTAAGGGTTTCTGCATCATCT
TGAACTCGTGTAGTGCAAGACGTATGGATCAGTGATGTAAAGTATGCTAC
GTGCCTTGAGTGGATGATGCACATCAGGCACATGTATGTACACGTAGAAG
TCTAAAGCCGGGCCAACCAAATAACAAGCTGTTGTACGAAACGGAAAAAA
CTTGCAAATCCAGCCAATCGGCCCGGTTGGCACCACCGTCGGTCCTGCTC
TTTATGGTATGATCAATATGTGTGTCGTCCCCCTCCCCCCCTACGCGCAA
CCAGCCTTGACCAGAAGGTGTAGCATCAAGTGTTGTACCTGGTCTACCTT
GTCGTTCGTAGAGCACTGTAGTCTACGCACAAGGCAGACAAATGTGGTAC
TTGTTTTGTCGCCAACTTTTTCATCCTGCACCACCAGCTCTATCGCAAAC
AGTAGTAAAGAACATAAATTTACTTCATTTGTAAAACAGTAAGATGTGTG
TTGCTCTAAAAGTTGTGCTTTCCAACCTCTTCGTATGATCGTATCTGTAG
ACTGACCACAGCAACGTGCTCCCCACGGGCACCGAGGTAGTAGCCTCTAA
CAACTGGAGCACGAGGTCGAGAGAGGGGCACCCTCGCATCATCGTCCCTG
GCGCGCCGCGCAATTATGTCAGCTGCATGAGCCGTCACGGGTTCATTTTG
GGTAAGGACGGCGAAGACTAATTTGTGGACGAAAACCGCGCGCGGATGAA
ACCATCCAGCCGCTGTTTCGCTCCCTCGACATCTGCTCCCCCGCTTTCGA
CATCAGCACGGTCGACATCGTCACGGATCGCAACAACCTGAGGAACCTGC
TCAGGTTCTGCCGCAGCCCCGGGGACACGTGAGTTGTGTTTGGTCAACCA
GGCGGCGCAAACAGGGCAACCCCGGTACCATTCCTTTTCTTTACGAGAGG
TTAGCGGGTGGGGGGGTTGCGGAGTCATTCTTTCCACCCGCTCAGTTTTT
TTGTCGTTTTTTCCTGACGAACGTCAACGGTTCTTCTGTCATGTGCGTGT
CGTGGCTCGCTTGATCTACTGCTTGGAGTCGTACTTTGTCCACTTGCTTT
GCTCTTGGGCCCTTGTCCAAGCTTCGGGGTCAGAAAGCGTATGTTACTGG
GGCATGGGAGTCAGCGGGCACTCCGCGCAAGCGCGCATTTCATTGTTTTT
CATTCACATCGAACGGCTCCTGGAGCAATAATTTTTCGACAATTTTTCAC
GCTTCCCCTGCTTCTTGCCGCTCGGCAACGTCGTACAATTTCGCAGCACC
ACGGCCAACGAGTTTGGCAACCAGGACTTCAAGTTCTTCATCCACTCCAT
TTTCGACAACAACAACGGACGCGGCGACCCGACCCTGGTCTTCACGAGGG
CGACGGTAGGCCATCACAACATCAACGGGTACGGCCACAACTTCGAGGAA
AAGCTCACCGAGAAGGATACGCATGCTCCGTGGGACGCCGGGACGAAACG
TGTCGTAACAAAGGTCGAGAACTACTGTAACAAAGTACCTGCCCATCGTT
AGTAGAGTACGCCTTCCGCAACGCATGTACCATGATTTCGAAATATTCTG
GGTGACTACATACGGCATCACCGACGCACATGAAACATGACGGAGACAAC
CTAAGCTAGTTGAATTGAATGTTCTCAGAGCATCACGTATCGCTTATCCC
CTCTAATCGAGCATCACAGACAACGTCCCGTTCAAGATATTGGTCAGAGG
GGGACGAAGTGAAGTCTTCGTCTTCACAACGATCTTTTTTACCCTCTACA
GATATTTCTCACGCTGCTGGTGAAGTTGGGGTCAGGCTGCTTCCCCCCCC
TTCCTTGCGCGCATGTGTCTCTGACGAAAGTTGAGCAACACGCGACCGAA
GATTTGCGCGTTCCTTACTGCAGAGTTGTCGTCGTTTCTACATCATAGGT
TTTTCATCGAACGCGCCCTTCCCCGTTGCGTGTGTAACCCTCCCCAGATG
AACATGGATGGAATGGCGCTGCTTGTGCGCTCTGAGGTGGACGCCTGCGA
CGGGACTGGTTCCACTAGGCTCGTTCCTGAGGCGAAGGGGCGCGCCTCAT
CTTCCGGTGGTGGTGGTGGTGGTGGTGGTGGTTGTGAAAGTACCTCTGCC
AAGGCTGACGCCAAGAGTATGGAAGACCTGCTGGTTGAACAGCTCGATGG
CCTGGGGCTCTCTTCTTCCTCGTCGGGAGGAGGAGGAACGAGTGAGGTGG
GCCGACAGACAAATTCGTGATTGCTTGCTGTTGTCTTCCACATGGAAAAG
GAAAATATTGAAACGGACAGGGAGCGTCCAGGCTTACTTAACAAGCCTAA
GATATTTTTTCGATTCGAGTACCACACATGGGGGGGGGAAGTCAATCCCA
TAGAAGCAAGCAACGTATTTCTGTCATTTACACAACATCGGCGCCAGCTC
TCCTTCGGCCTCGAACCACAGCGTCGATTGTATTTGCACTTTATCCCGTC
GAAGAACTTAAAGGCCTACAAACAAGCGGGTAGCTAGCCTAGTCACTAAC
ACAACCACCCGTACCATTACATGAGTCCTTCCTGTTTTCGTTGTTTGTTC
GCCTCCTCCCTCCCCTCCCCTCTCGGGCATGTACGCTACGGTCAAAGTTT
GAGCCTGCCTCTGGTCTGACGTGCGAAAAGAGGGGGAAGCTTCTCGGACA
CGACGCCAAGGTTTTGGAGCTCAAGACCAAAAACTCACGGTATGATGCGT
CGTCTTCTTGTTCGTGCTTCTTAACAACACATGAAACATAATTTCAGAGG
AATAATCTGTATGCCTGGGAGGCACGGGCTGCACGGCTTGACCGAAGCTC
GTTGGGGGCAGAAAACCTGCGCTATTTCAGCAATCAACACCGCTATTGCG
AAAACAAGGCTGGTCATTTGTGTTCTAAGGATACCCGAGGGTTGAAAAGA
CGGGAAGTGACATCGATCGGAAATTATAGACTAGGGAAAACATCTCTTGA
CCCACTTTCGGGAAGGCACGATTGGCCATCGATGATCGGTCCTGTGGTAG
CGATGCTCCGTCCTCTCGAGGACGCGTGGCCAATGGCCTAGCCGCCAAGG
CATGCAAAACATAAGAGTACGCCCCCCCCCCCCCCCCCCCCCCCCCCTCC
CCTTCCCCCGCCGCCCCCCCCTTCCTCCCCCCCCCTCTCCCACTCCCCCC
ACCGCCCGCGGGGCCAACCCCATGCATGCCGTCCCGAAGGTACGCCGCGG
AGATCAACTGGAAGGACATCTACTGGCAGCTGGCCCTGGGCGGCGCTCAC
GCGCTGGTCCTCGGCCTACACAACCGCGGGACCTTTGGGGCCGGGGACAT
GAGGCACCATTCCATCGGCGAGGTGTGGGACAACCCTACGAAAAACACCT
TGAACGAGAACACACATGATGCGCCTCAGGCGTAACGTTATTTTTTCTTG
GTCTACAAGAATGCCGCCGTGAAGCCAATGATATCTATACGCGTACCGAA
ATTTCTTGTTGAGAAAGCAAGCACCGAACGCCCTTCGATATGAAGCGGTT
TCGGTTGTGTCGTATTTGGATTCGAGATAGGGTTATCGCGCCCGGCGTGG
AGTGGCATCGATGCTCTCTCCCGGTTGAACCCATTCTTTTCCTTTGCGAT
GTTCCACCTGTAAATGATGGCTTGTTTTTGCGCCATGGTGAACGCATCGA
CCGATGTACTTTACGCAGTTACTTCTGAGCACATGTGCCCGAAAACAAGG
GACGGCGCGACTCGAAAACGTCCAACAGGAGACTGCGGTTCTTCGTAGAA
CATTTATTTCAAGCATTGACATTGTGCTTGAGGATCGACGACGACCTTCC
CCAGGAAAAGGATAAACTGTTATTGACGACCAAACAAACACAAGCAAAAA
TTTAGCAAGCATTGTTCCACCATAACGTGCAGACAACCACGTCATCGTGT
ATAAATATGTTCGAGCCGTCACATCTAAATATTTTCTGCTATTACGCATA
CGACTGTCCGTTCACTAGGTCAAGACTCGCGCGGAAGAGTCCGGGTCGGC
GTCCATGGTGTTCCTAGCGAACACCTTGCGCGGTATCACCAAGGCCGCGC
ACCGCATCATCGGTGCCCCGTCTACTGCGCGCACGCGCCCGGCTGCGCCT
CCTACGCCGTCCGCTGTTCCTGGCGAGACGGGAACACGCGGCGAATCAAA
CCCCCGCGTCGCCGCCGCCGCTGCCGTCGTCGTCGAGTACTCGCCTGGCC
GCGACAGCAGGCGCATCTGCATCAGGCTTGCCACCGCCGCGGATGGGGCC
GCTCCTCCCTCCTGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig11996:549..5013+ >mRNA_Ecto-sp13_S_contig11996.1702.1 ID=mRNA_Ecto-sp13_S_contig11996.1702.1|Name=mRNA_Ecto-sp13_S_contig11996.1702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11996:549..5013+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGCTGAAGAACTTATTCGCGCTCGTGATGTTCAGCACGGTCGACATCG TCACGGATCGCAACAACCTGAGGAACCTGCTCAGGTTCTGCCGCAGCCCC GGGGACACGACTTCAAGTTCTTCATCCACTCCATTTTCGACAACAACAAC GGACGCGGCGACCCGACCCTGGTCTTCACGAGGGCGACGGTAGGCCATCA CAACATCAACGGGTACGGCCACAACTTCGAGGAAAAGCTCACCGAGAAGG ATACGCATGCTCCGTGGGACGCCGGGACGAAACGTGTCGTAACAAAGATG AACATGGATGGAATGGCGCTGCTTGTGCGCTCTGAGGTGGACGCCTGCGA CGGGACTGGTTCCACTAGGCTCGTTCCTGAGGCGAAGGGGCGCGCCTCAT CTTCCGGTGGTGGTGGTGGTGGTGGTGGTGGTTGTGAAAGTACCTCTGCC AAGGCTGACGCCAAGAGTATGGAAGACCTGCTGGTTGAACAGCTCGATGG CCTGGGGCTCTCTTCTTCCTCGTCGGGAGGAGGAGGAACGAGTGAGTTTG AGCCTGCCTCTGGTCTGACGTGCGAAAAGAGGGGGAAGCTTCTCGGACAC GACGCCAAGGTTTTGGAGCTCAAGACCAAAAACTCACGGTACGCCGCGGA GATCAACTGGAAGGACATCTACTGGCAGCTGGCCCTGGGCGGCGCTCACG CGCTGGTCCTCGGCCTACACAACCGCGGGACCTTTGGGGCCGGGGACATG AGGCACCATTCCATCGGCGAGGTCAAGACTCGCGCGGAAGAGTCCGGGTC GGCGTCCATGGTGTTCCTAGCGAACACCTTGCGCGGTATCACCAAGGCCG CGCACCGCATCATCGGTGCCCCGTCTACTGCGCGCACGCGCCCGGCTGCG CCTCCTACGCCGTCCGCTGTTCCTGGCGAGACGGGAACACGCGGCGAATC AAACCCCCGCGTCGCCGCCGCCGCTGCCGTCGTCGTCGAGTACTCGCCTG GCCGCGACAGCAGGCGCATCTGCATCAGGCTTGCCACCGCCGCGGATGGG GCCGCTCCTCCCTCCTGA back to top
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