mRNA_Ecto-sp13_S_contig11995.1701.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11995.1701.1
Unique NamemRNA_Ecto-sp13_S_contig11995.1701.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Match: D8LJI1_ECTSI (N6-L-threonylcarbamoyladenine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI1_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 2.140e-69
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 1 
Query:    1 CSCLQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRPP 321
            C  LQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGT LEDTTCTQRFRTDAVDVAWRPP
Sbjct:  186 CFSLQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTELEDTTCTQRFRTDAVDVAWRPP 292
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BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Match: A0A6H5KL15_9PHAE (N6-L-threonylcarbamoyladenine synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL15_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 3.090e-67
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:   31 MLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRPP 321
            MLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRPP
Sbjct:    1 MLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRPP 97
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BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Match: A0A7S2I6F1_9STRA (N6-L-threonylcarbamoyladenine synthase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I6F1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.340e-52
Identity = 79/106 (74.53%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 CSCLQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRP 318
            C  LQETLFAMLVEITERAMAHCG+N VLIVGGVGCN+RLQEMM  M   RGG +CAMDHRYCIDNGAMIAQAG+  + HG  T +ED+ CTQRFRTD V   WRP
Sbjct:    7 CYSLQETLFAMLVEITERAMAHCGQNQVLIVGGVGCNKRLQEMMADMVKSRGGMLCAMDHRYCIDNGAMIAQAGIMAFQHGATTKMEDSWCTQRFRTDQVKTVWRP 112
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BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Match: A0A836CHZ2_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ2_9STRA)

HSP 1 Score: 176 bits (446), Expect = 3.990e-52
Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 CSCLQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRP 318
            C  LQETLFAMLVEITERAMAHCG++TVLIVGGVGCN+RLQ MM  M  +RGGRVCAMDH YCIDNGAMIAQAG+F++  G  T + DTTCTQRFRTDAV+V WRP
Sbjct:  256 CYSLQETLFAMLVEITERAMAHCGQDTVLIVGGVGCNKRLQAMMDCMVRQRGGRVCAMDHTYCIDNGAMIAQAGLFEFQQGMSTPIADTTCTQRFRTDAVEVVWRP 361
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BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Match: A0A7S2CA29_9STRA (N(6)-L-threonylcarbamoyladenine synthase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CA29_9STRA)

HSP 1 Score: 171 bits (434), Expect = 8.970e-52
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 CSCLQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRPP 321
            C  LQET+FAMLVEITERAMAHCG+N+VLIVGGVGCNRRLQEMM +M A+RGG VCAMDHRYCIDNGAMIAQAGV  Y  G  T + DTT TQRFRTD  +V WR P
Sbjct:  131 CYSLQETIFAMLVEITERAMAHCGQNSVLIVGGVGCNRRLQEMMEVMVADRGGSVCAMDHRYCIDNGAMIAQAGVMAYQQGYETPIVDTTVTQRFRTDQTEVKWREP 237
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BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Match: A0A7S2W3U1_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3U1_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.440e-51
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 CSCLQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRP 318
            C  LQET+FAMLVEITERAMAHCG+N+VLIVGGVGCN+RLQEMMG M ++RGG +CAMD RYCIDNGAMIAQAGV QY HG  T LED T TQRFRTDA +V WRP
Sbjct:  307 CYSLQETIFAMLVEITERAMAHCGQNSVLIVGGVGCNKRLQEMMGQMVSDRGGTLCAMDQRYCIDNGAMIAQAGVMQYQHGYETPLEDATVTQRFRTDATEVMWRP 412
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BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Match: A0A6V2B8R3_9STRA (N6-L-threonylcarbamoyladenine synthase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2B8R3_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.720e-51
Identity = 80/106 (75.47%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 CSCLQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRP 318
            C  LQETLFAMLVEITERAMAHCG+N VLIVGGVGCN+RLQEMM  M   RGG +CAMDHRYCIDNGAMIAQAG+  + HG  T LED+ CTQRFRTD V   WRP
Sbjct:   77 CYSLQETLFAMLVEITERAMAHCGQNQVLIVGGVGCNKRLQEMMADMVKSRGGTLCAMDHRYCIDNGAMIAQAGIMAFQHGVTTKLEDSWCTQRFRTDQVKTVWRP 182
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BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Match: A0A6U1PPX4_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PPX4_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.290e-51
Identity = 82/107 (76.64%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 CSCLQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRPP 321
            C  LQET+FAMLVEITERAMAHC ++ VLIVGGVGCN+RLQEMM  M  ERGGR+CAMDHRYC+DNGAMIAQAGVF Y HG  TALEDT CTQR+RTD  D+ WR P
Sbjct:  271 CFSLQETIFAMLVEITERAMAHCDQSEVLIVGGVGCNKRLQEMMQAMVDERGGRLCAMDHRYCVDNGAMIAQAGVFAYQHGITTALEDTWCTQRYRTDMPDIVWRLP 377
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BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Match: W7TZ21_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ21_9STRA)

HSP 1 Score: 174 bits (442), Expect = 4.560e-51
Identity = 83/106 (78.30%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 CSCLQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRP 318
            C  LQET+FAMLVEITERAMAHCG+  VLIVGGVGCNRRLQEMM  MA ERGG VCAMDHRYCIDNG MIAQAG F + +G   AL DT CTQRFRTDAV+V WRP
Sbjct:  301 CFSLQETIFAMLVEITERAMAHCGQRQVLIVGGVGCNRRLQEMMEAMADERGGSVCAMDHRYCIDNGGMIAQAGAFAHQYGASFALSDTACTQRFRTDAVEVLWRP 406
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BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Match: F0W7Z9_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Albugo TaxID=65356 RepID=F0W7Z9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.000e-50
Identity = 81/105 (77.14%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:    1 CSCLQETLFAMLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDHRYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWR 315
            C  LQET+FAMLVEITERAMAHC ++ VLIVGGVGCN+RLQEMMG+MA +RGG VC MDHRYCIDNGAMIAQAGV QY +G  T  E+ TCTQRFRTD VDV WR
Sbjct:  260 CYSLQETVFAMLVEITERAMAHCKQSLVLIVGGVGCNKRLQEMMGIMAKDRGGHVCGMDHRYCIDNGAMIAQAGVLQYQYGEVTPFEEATCTQRFRTDEVDVVWR 364
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11995.1701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI1_ECTSI2.140e-6997.20N6-L-threonylcarbamoyladenine synthase n=1 Tax=Ect... [more]
A0A6H5KL15_9PHAE3.090e-67100.00N6-L-threonylcarbamoyladenine synthase n=1 Tax=Ect... [more]
A0A7S2I6F1_9STRA1.340e-5274.53N6-L-threonylcarbamoyladenine synthase n=1 Tax=Hel... [more]
A0A836CHZ2_9STRA3.990e-5277.36Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S2CA29_9STRA8.970e-5276.64N(6)-L-threonylcarbamoyladenine synthase n=1 Tax=F... [more]
A0A7S2W3U1_9STRA1.440e-5178.30Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A6V2B8R3_9STRA1.720e-5175.47N6-L-threonylcarbamoyladenine synthase n=2 Tax=Dit... [more]
A0A6U1PPX4_9STRA3.290e-5176.64Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
W7TZ21_9STRA4.560e-5178.30Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
F0W7Z9_9STRA1.000e-5077.14Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11995contigEcto-sp13_S_contig11995:3948..5199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score205.3
Seed ortholog evalue1.3e-50
Seed eggNOG ortholog2880.D8LJI1
Preferred nameKAE1
Model size324
KEGG rclassRC00070,RC00416
KEGG koko:K01409,ko:K09487
KEGG ReactionR10648
KEGG Pathwayko04141,ko04151,ko04626,ko04657,ko04915,ko04918,ko05200,ko05215,ko05418,map04141,map04151,map04626,map04657,map04915,map04918,map05200,map05215,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000408,GO:0000722,GO:0000723,GO:0002949,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031490,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070525,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.N(6)-L-threonylcarbamoyladenine synthase activity
EggNOG OGsCOG0533@1,KOG2708@2759
Ec32 ortholog descriptionGcp-like domain
Ec32 orthologEc-17_002090.1
EC2.3.1.234
Cds size294
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462636.2003756-CDS-Ecto-sp13_S_contig11995:3947..40891681462636.2003756-CDS-Ecto-sp13_S_contig11995:3947..4089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11995 3948..4089 -
1681462636.210695-CDS-Ecto-sp13_S_contig11995:5017..51691681462636.210695-CDS-Ecto-sp13_S_contig11995:5017..5169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11995 5018..5169 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462636.2187052-UTR-Ecto-sp13_S_contig11995:5169..51991681462636.2187052-UTR-Ecto-sp13_S_contig11995:5169..5199Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11995 5170..5199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11995.1701.1prot_Ecto-sp13_S_contig11995.1701.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11995 3948..5169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11995.1701.1

>prot_Ecto-sp13_S_contig11995.1701.1 ID=prot_Ecto-sp13_S_contig11995.1701.1|Name=mRNA_Ecto-sp13_S_contig11995.1701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MLVEITERAMAHCGKNTVLIVGGVGCNRRLQEMMGLMAAERGGRVCAMDH
RYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRPP*
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mRNA from alignment at Ecto-sp13_S_contig11995:3948..5199-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11995.1701.1 ID=mRNA_Ecto-sp13_S_contig11995.1701.1|Name=mRNA_Ecto-sp13_S_contig11995.1701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11995:3948..5199- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTCGTGCCTGCAGGAAACCCTGTTCGCGATGCTGGTGGAGATCACAGA
GAGGGCTATGGCGCACTGCGGGAAGAACACGGTGCTGATAGTCGGTGGCG
TGGGATGCAACCGCCGGCTGCAGGAGATGATGGGGCTCATGGCGGCGGAG
CGCGGCGGCCGTGTGTGTGCGATGGATCACAGGTGTGTGTGTAGGTGAAA
AGGTGAAGAACACGGGGCACTGCTACTGCCTGCAGTCGTCGTGGTCGTGT
TGTGGGTTGCTTGATGTTTTCGTTTGCGATACAATGCCGTTCGTTGTTGT
TGTTGTTGATGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGATGTTGATG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTGTTGTTGTTGTTGTT
GTTATTGTTGTTGTTCTCGTTGCCATGGACAAGGCGTTCCGCATGTGCCT
CCCTTGCGTTTATCTCCCTTGCGTTCAGTTGTTCTTACTTTCATGCATGC
GCAGCCCTGCCGGCGTTCCGACTAGACACATAAACTAATGTTTTAGGCCT
CTCCCCCGCCACCGCCACCCCTCCCTCCAACCGCAAGCAGTGCCAAATTA
TTGTTTCCGGCCAACCGTCCGTCCGTGCATTTCAGTTCACCATGCACTAT
TATTCCTGGAGACACATTACAGATAGCGCCCGCTGCGAAGAACTTGCTTG
GTAGTAAGAACTTCTCGCTTAACATGTATCGTTCCCACCTTTAAATTTGA
GGGAACTTGAACATCATTTTTGAGGGAACTTGAACATCATTTTTGAGGGA
ACTTGAACATTATTTATTTGTGAGCCCGCTTAATTCAGCACCCACAAGAG
GTCCCTAGCCTCAGCCTCGCCCAACTGGATTAATCAAATGGGCGCTATCT
GTATCTTGCCTTGTTTGCCTCTCACACCCTGACATCGACAACGAGTTGGG
GAGTGAAATCAAATGACAGCAAGCAGGTATGTATCATTTGTCTTTCAATC
TGTCCTCACAGATATTTTCTCTGATCGAAAACTACGTTGTTGCTGCTGCT
GCTGCTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGTCGCCTATGCCGC
CGGTGTTCAGGTACTGCATAGACAATGGCGCCATGATCGCCCAGGCGGGG
GTGTTCCAGTACATGCACGGAGGCGGCACCGCGCTGGAAGACACCACGTG
CACGCAGAGGTTTCGCACGGATGCCGTGGACGTGGCGTGGAGGCCACCTT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11995:3948..5199-

>mRNA_Ecto-sp13_S_contig11995.1701.1 ID=mRNA_Ecto-sp13_S_contig11995.1701.1|Name=mRNA_Ecto-sp13_S_contig11995.1701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11995:3948..5199- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGTGGAGATCACAGAGAGGGCTATGGCGCACTGCGGGAAGAACAC
GGTGCTGATAGTCGGTGGCGTGGGATGCAACCGCCGGCTGCAGGAGATGA
TGGGGCTCATGGCGGCGGAGCGCGGCGGCCGTGTGTGTGCGATGGATCAC
AGGTACTGCATAGACAATGGCGCCATGATCGCCCAGGCGGGGGTGTTCCA
GTACATGCACGGAGGCGGCACCGCGCTGGAAGACACCACGTGCACGCAGA
GGTTTCGCACGGATGCCGTGGACGTGGCGTGGAGGCCACCTTGA
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