mRNA_Ecto-sp13_S_contig11994.1700.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11994.1700.1 vs. uniprot
Match: A0A6H5K804_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K804_9PHAE) HSP 1 Score: 901 bits (2328), Expect = 3.040e-310 Identity = 652/782 (83.38%), Postives = 665/782 (85.04%), Query Frame = 1
Query: 4 MPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSADYEAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSASSGCTSKRAKLTSRSLSRLGGEPTVNGSGVVGSG-GAMDIGDGSTSDGRARARDGFLKARGMSLDGGGGGRRGHFEQSMSHSTDEWQAMSKAGRVLGVDSLEERDVEDQRRASSVKLAKILGVGEENVAELQQNANPARDRHWLPPRSSASKAARMLGVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATRGQCAISSLIRALEINGGTATGSTSQTGSSDNGSSSVGDNGSEDLHEIKKGLGKQQETGSNRSTRATES----------------------------------SPQP----------------ELSDDSQLAGLQTPGASSSSETGPGGLRGFSRHNRDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTPTLTPASSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VARHASDFALNEGVEWRSPVSAVPEGKSGASSMSADKGGGRVARVSEVLDDSPLVASSGNGGQGWARDWSAAAAGTAAITAQQHXXXXXXXXR------RSSSAPVDQQRASRTASAMGPVDFRLPDPVPSRAEQRAAVGAVNTAASCKKSRPEVWPEHKQVSPVVPQLGGGGRELPLPSMLASAAAAEEKMGGRWAGGQGPQQRGSLPEYKYESPDVAPRSTVGGGVEEQQH 2172
MPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGS DYEAA XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX ASSGCTSKRAKLTSRSLSRLG EP VN SGVVGS G++DIG GSTSDGRARARDGFLK RGMSLDGGGGGRRGHFEQS SHST+EW+AMSKA RVLGVDSLEERDVEDQRRASSVK A+ILGVG ENVAELQQNAN ARDRHW PPRS ASKAARMLGVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATRGQ ISSLIRALEINGGTATGSTSQTGSSD SSVGDN SEDLH+IKKGLGKQQETGSNRSTRATES PQ ELSDDSQLAGLQTPGAS SSETGPGGLRGFSRH RDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTP+LTPASSAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VARHASDFALNEG EWRSPVSAV EGK+GASSMSADKGGG VARVSE+LD+ PLVASSGNGGQGWARDWSAAA GT AITAQQHXXXXXXXX RSSSAPVDQQR SRTASAMGPVDFRLPDPV S AEQRAAVGAVNTAA CK+SRPEVWPEHKQVSPVVPQLGGGGRELPLPSM ASAAAAEEKMGGRW+GGQG QQRGSL EYKYESPD+A RSTVGGGVEEQQH
Sbjct: 1 MPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSTDYEAAXXXXXXXXXXXXXXXXMGHVPLSSXXXXXXXXXXXXXXXXXXXXXXX--ASSGCTSKRAKLTSRSLSRLGDEPAVNRSGVVGSSSGSIDIGHGSTSDGRARARDGFLKGRGMSLDGGGGGRRGHFEQSSSHSTEEWRAMSKAARVLGVDSLEERDVEDQRRASSVKAAQILGVGVENVAELQQNANAARDRHWAPPRSGASKAARMLGVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATRGQGTISSLIRALEINGGTATGSTSQTGSSDXXXSSVGDNASEDLHQIKKGLGKQQETGSNRSTRATESCSSVSECAHTDTDGVSSVDGGSSARGSYDYSPVEGPQQQKQQQQHTRRASVSPAELSDDSQLAGLQTPGASCSSETGPGGLRGFSRHTRDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTPSLTPASSAGAAVTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARHASDFALNEGFEWRSPVSAVAEGKNGASSMSADKGGGHVARVSEILDEPPLVASSGNGGQGWARDWSAAADGTVAITAQQHXXXXXXXXXXXXXXXRSSSAPVDQQRTSRTASAMGPVDFRLPDPVSSWAEQRAAVGAVNTAADCKESRPEVWPEHKQVSPVVPQLGGGGRELPLPSMRASAAAAEEKMGGRWSGGQGSQQRGSLAEYKYESPDLAQRSTVGGGVEEQQH 780
BLAST of mRNA_Ecto-sp13_S_contig11994.1700.1 vs. uniprot
Match: D7G2Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y0_ECTSI) HSP 1 Score: 835 bits (2156), Expect = 1.680e-288 Identity = 609/722 (84.35%), Postives = 623/722 (86.29%), Query Frame = 1
Query: 1 IMPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSADYEAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSASSGCTSKRAKLTSRSLSRLGGEPTVNGSGV---VGSGGAMDIGDGSTSDGRARARDGFLKARGMSLDGGGGGRRGHFEQSMSHSTDEWQAMSKAGRVLGVDSLEERDVEDQRRASSVKLAKILGVGEENVAELQQNANPARDRHWLPPRSSASKAARMLGVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATRGQCAISSLIRALEINGGTATGSTSQTGSSDNGSSSVGDNGSEDLHEIKKGLGKQQETGSNRSTRATESSPQPELSDDSQLAGLQTPGASSSSETGPGGLRGFSRHNRDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTPTLTPASSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VARHASDFALNEGVEWRSPVSAVPEGKSGASSMSADKGGGRVARVSEVLDDSPLVASSGNGGQGWARDWSAAAAGTAAITAQQHXXXXXXXXRRSSSAPVDQQRASRTASAMGPVDFRLPDPVPSRAEQRAAVGAVNTAASCKKSRPEVWPEHKQVSPVVPQLGGGGRELPLPSMLASAAAAEEKMGGRWAGGQGPQQRGSLPEYKYESPDVAPRSTVGG 2151
+MPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSADYEAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASSGCTSKRAKLTSRSL+RLG EP VNGSGV K RGMSLDGGGGGRRGHFEQSMSHST+EW+AMSKA RVLGVDSLEERDVEDQRRASSVK A+ILGVG ENVAELQQNAN ARDRHW PPRSSASKAARMLGVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATRGQ ISSLIRALEINGGTATGSTSQTGSSDNGSSSVGDNGSEDLH+IKKGLGKQQETGSNRSTRATES PELSDDSQLAGLQTPGASSSSE GPGGLRGFSRHNRDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTP+LTPASSAG XXXXXXXXXXXXX XXXXXX VARHASDFALNEGVEWRSPVSAV E K+GA SMSA+KGGGRVARVSEVLDDSPLVASSGNGGQGW RDWSAAAAGTAAITA H XXXXXXX RSSSAP+DQQRASRTASAMGPVDFRLPDPVPS AEQRA+VGAVNTAA CK+SRPEVWPEHKQVSPVVPQL GGRELPLPSMLASAAAAEEKMGG +GG G G Y Y P +TVGG
Sbjct: 1 MMPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSADYEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSGCTSKRAKLTSRSLTRLGDEPAVNGSGVGVVXXXXXXXXXXXXXXXXXXXXXXXXXXKGRGMSLDGGGGGRRGHFEQSMSHSTEEWRAMSKAARVLGVDSLEERDVEDQRRASSVKAAQILGVGVENVAELQQNANAARDRHWAPPRSSASKAARMLGVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATRGQGTISSLIRALEINGGTATGSTSQTGSSDNGSSSVGDNGSEDLHQIKKGLGKQQETGSNRSTRATESCSSPELSDDSQLAGLQTPGASSSSEAGPGGLRGFSRHNRDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTPSLTPASSAGAAVTAXXXXXXXXXXXXXGSPSIPTPQRQQHXXXXXXXXVARHASDFALNEGVEWRSPVSAVAERKNGAGSMSAEKGGGRVARVSEVLDDSPLVASSGNGGQGWPRDWSAAAAGTAAITAPHHPXXXXXXXXRSSSAPMDQQRASRTASAMGPVDFRLPDPVPSWAEQRASVGAVNTAAGCKESRPEVWPEHKQVSPVVPQLVRGGRELPLPSMLASAAAAEEKMGG--SGGSGDVASG----YGY------PLTTVGG 710 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11994.1700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11994.1700.1 >prot_Ecto-sp13_S_contig11994.1700.1 ID=prot_Ecto-sp13_S_contig11994.1700.1|Name=mRNA_Ecto-sp13_S_contig11994.1700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=774bp MPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSAback to top mRNA from alignment at Ecto-sp13_S_contig11994:2..3163- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11994.1700.1 ID=mRNA_Ecto-sp13_S_contig11994.1700.1|Name=mRNA_Ecto-sp13_S_contig11994.1700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11994:2..3163- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11994:2..3163- >mRNA_Ecto-sp13_S_contig11994.1700.1 ID=mRNA_Ecto-sp13_S_contig11994.1700.1|Name=mRNA_Ecto-sp13_S_contig11994.1700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2322bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11994:2..3163- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |