mRNA_Ecto-sp13_S_contig1199.1697.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1199.1697.1
Unique NamemRNA_Ecto-sp13_S_contig1199.1697.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: D8LE76_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE76_ECTSI)

HSP 1 Score: 603 bits (1554), Expect = 6.220e-200
Identity = 440/483 (91.10%), Postives = 447/483 (92.55%), Query Frame = 1
Query:    1 MEPSDREVTSAVHAQRVVRGFLGRLAAIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEHQEQXXXXXXXXAGGSSGDTNTAEEAGHEGWVWDDTSGWYYDEDLATQLLTGGVDVASKKGSDDGNVTASVEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDSVDGARPEILNLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISPDLAGMESLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEVPLQVGDLQLLKRTREWEIGLRLLRXXXXXXXXXXXXXXXXXXXEECRNLRDLRLD 1449
            MEPSDREVTSAVHAQRVVRGFLGRLAAIR+ANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRG+ MTRALLASVVSKV DESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKE QE XXXXXXX AGGS+GDTNTAEEAG+EGWVWDDTSGWYYDEDLATQLLTGGVDV SKKGSD GNV+A     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDS+DGARPEIL+LSKLDMDRVTSRVYRLDWLQRLD                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LKEVPLQVGDLQLLKRTREWEIGLRLLR XXXXXXXXXXXXXXXXX EECRNLRDLRLD
Sbjct:    1 MEPSDREVTSAVHAQRVVRGFLGRLAAIRQANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGIRMTRALLASVVSKVFDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEQQEXXXXXXXXHAGGSNGDTNTAEEAGYEGWVWDDTSGWYYDEDLATQLLTGGVDVVSKKGSDGGNVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDSIDGARPEILDLSKLDMDRVTSRVYRLDWLQRLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLKEVPLQVGDLQLLKRTREWEIGLRLLREXXXXXXXXXXXXXXXXXVEECRNLRDLRLD 483          
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A6H5KU30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU30_9PHAE)

HSP 1 Score: 447 bits (1149), Expect = 2.510e-150
Identity = 319/507 (62.92%), Postives = 327/507 (64.50%), Query Frame = 1
Query:    1 MEPSDREVTSAVHAQRVVRGFLGRLA---------------------------------------------------AIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEHQEQXXXXXXXXAGGSSGDTNTAEEAGHEGWVWDDTSGWYYDEDLATQLLTGGVDVASKKGSDDGNVTASVEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDSVDGARPEILNLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISPDLAGMESLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------LKEVPLQVGDLQLLKRTREWEIG 1341
            MEPSDREVTSAVHAQRVVRGFLGRLA                                                   AIR+ANLVYEKIFDPRTHAYYYYNT SFETTW                                 AAWRRRRGL MTRALLASVVS                      SKPALFGAEDVEDYPSAMLLAEGQN+AEPFGTG YDYDQSQGWVGQEAWTKE +E XXXXXX  AG S GD NTAEEAG+EGWVWDDTSGWYYDEDLATQLLTGGVDV SKKGSDDGNVTASVE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   S+APRNFPRSKAQRLVDEAEDSVDGARPEIL+LSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRIS DLAGME+LVD                                                XXXXX         LKEVPLQVGDLQLLKRTREWE+G
Sbjct:    1 MEPSDREVTSAVHAQRVVRGFLGRLAGKGVSPCVTLTVMLVSSPCKVGLGDADFFLALRCATTCVYPSAVFPDESWAAIRQANLVYEKIFDPRTHAYYYYNTCSFETTWH--------------------------------AAWRRRRGLRMTRALLASVVSXXXXXXXXXXXXXXXXXXXXXXSKPALFGAEDVEDYPSAMLLAEGQNTAEPFGTGIYDYDQSQGWVGQEAWTKEQKEXXXXXXXQHAGVSDGDANTAEEAGYEGWVWDDTSGWYYDEDLATQLLTGGVDVVSKKGSDDGNVTASVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--SIAPRNFPRSKAQRLVDEAEDSVDGARPEILDLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISSDLAGMENLVDVNFRHNRWVREVSQARIQAIPDELEALTKLKHLQLGHNRISGFRGNLYXXXXXXXXXXXXXXLKEVPLQVGDLQLLKRTREWEVG 473          
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A8J2SLX2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SLX2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.420e-27
Identity = 100/335 (29.85%), Postives = 152/335 (45.37%), Query Frame = 1
Query:  100 VYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEHQEQXXXXXXXXAGGSSGDTNTAEEAGHEGWVWDDTSGWYYDEDLATQLLTGGVDVASKKGSDDGNVTASVEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDSVDGARPEILNLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISPDLAGMES 1104
            V+EKIFDP    YYYYNT + E +W+ PA +      + DL  +APT+T+E+AA+ +Q AWRR + L   R L+ASVVSKV DE +  +YY+N  +G+TSW+KP L G++D+E     ++ ++G+  AE   T   + +                              S D +  E  G         SG       +T+  T          SDD                                              L PR +PRS+AQ+ +D+AED+ +    + L+LS L M R++ R   ++ L  LD+S+N + R+ PD+ G+ S
Sbjct:   37 VWEKIFDPVQQIYYYYNTVTDEASWKRPAPLL-----WRDLGDVAPTFTDEQAAIYMQCAWRRLKFLRTVRRLVASVVSKVYDEHSQNYYYYNAQTGQTSWTKPLLLGSQDIEPGTQRLVSSDGRILAE---TAVVELE------------------------------SDDDSERESIG---------SG-------STRRRT------RSMSSDD--------------------------------------------LGLMPREYPRSEAQKRIDKAEDTPE---TDTLDLSGLKMARISFRALAIETLTHLDVSDNSITRLVPDIGGLAS 264          
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A7S3ZML4_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZML4_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.240e-27
Identity = 100/335 (29.85%), Postives = 152/335 (45.37%), Query Frame = 1
Query:  100 VYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEHQEQXXXXXXXXAGGSSGDTNTAEEAGHEGWVWDDTSGWYYDEDLATQLLTGGVDVASKKGSDDGNVTASVEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDSVDGARPEILNLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISPDLAGMES 1104
            V+EKIFDP    YYYYNT + E +W+ PA +      + DL  +APT+T+E+AA+ +Q AWRR + L   R L+ASVVSKV DE +  +YY+N  +G+TSW+KP L G++D+E     ++ ++G+  AE   T   + +                              S D +  E  G         SG       +T+  T          SDD                                              L PR +PRS+AQ+ +D+AED+ +    + L+LS L M R++ R   ++ L  LD+S+N + R+ PD+ G+ S
Sbjct:   55 VWEKIFDPVQQIYYYYNTVTDEASWKRPAPLL-----WRDLGDVAPTFTDEQAAIYMQCAWRRLKFLRTVRRLVASVVSKVYDEHSQNYYYYNAQTGQTSWTKPLLLGSQDIEPGTQRLVSSDGRILAE---TAVVELE------------------------------SDDDSERESIG---------SG-------STRRRT------RSMSSDD--------------------------------------------LGLMPREYPRSEAQKRIDKAEDTPE---TDTLDLSGLKMARISFRALAIETLTHLDVSDNSITRLVPDIGGLAS 282          
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A835Z3H8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.990e-19
Identity = 60/151 (39.74%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   28 SAVHAQRVVRGFLGRLAAIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNS 480
            +A+  Q++VRG+LGR  A+RR N VYEKIFDP TH +YYYNT +  ++W                          EAAV++QAAWRRR    + R+L+A+ VS VLDE+                 KPAL G+E++E Y   +L A G +S
Sbjct:   17 AALGVQKLVRGWLGRKQALRRLNEVYEKIFDPHTHGHYYYNTVTDASSW--------------------------EAAVLVQAAWRRRLAKRLARSLVAASVSMVLDEAXXXXXXXXXXXXXXXXXKPALLGSEELEPYQRLLLTAGGADS 141          
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A6G0XG08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XG08_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.330e-10
Identity = 45/142 (31.69%), Postives = 71/142 (50.00%), Query Frame = 1
Query:   22 VTSAVHAQRVVRGFLGR----LAAIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDV 435
            VT    A R+++  L R      +I+     ++K++DP TH Y+YY+  + E+TW  P     +L +F   ++     T E AAV +Q  +R  +       L  +   KV DE+  A+YYFN  +GE+ W+KP  F   D 
Sbjct: 1076 VTDPDEAARIIQAALSRNKCQTQSIKSLVGRFQKVYDPNTHRYFYYDQVTKESTWTAPL----LLKKFQKANSPTKYKTPESAAVRIQGIFRLHKARQEALQLAQASYEKVFDETIQAYYYFNTRTGESQWTKPKCFRDADA 1213          
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A5D6XZP2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZP2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.640e-10
Identity = 50/156 (32.05%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   13 DREVTSAVHAQRVVRGFLGRLAAIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAP---------------------TYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPAL 417
            ++E  +AV  Q ++R    R    +  + VYEKI+D  +  +YY+NT +    W  P  V+       D D ++P                     T TE +AAVMLQ A+RR+RG      L   V  ++ D    A+YY N  + ET+W KPAL
Sbjct:  326 EQENDAAVRIQGMLRAHSARAHMRKLISSVYEKIWDSSSARFYYHNTRTKHVKWAKPRWVS-------DADLLSPRTRQQRAEADERSAKLAVLRATITEGDAAVMLQRAYRRKRGFEALLQLCRQVYERIFDPHQNAYYYHNTRTEETTWEKPAL 474          
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A6G0XKM6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKM6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.590e-10
Identity = 48/150 (32.00%), Postives = 71/150 (47.33%), Query Frame = 1
Query:   52 VRGFLGRLAAIRRANLV----YEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTE-----------------EEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVE 438
            ++G      A RR  L+    Y+K+ DP +  YYYYN  + E+ W  P    ++LG   D+D+   T                    E AA+ LQ  +R R      R L+A    KVLD  +  +YY+N  +GE+ W+KP L G +DV+
Sbjct:  650 IQGLFRSRNARRRLRLLIAQTYQKVLDPESREYYYYNIKTGESQWNKP----KLLG-VSDIDSSPGTAKTPRPQANRLATLETPRRFEAAAIRLQCLFRARNARRRLRHLIAQTFQKVLDADSQQYYYYNTKTGESQWTKPVLLGDDDVD 794          
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A8K1FGZ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGZ9_PYTOL)

HSP 1 Score: 71.6 bits (174), Expect = 1.470e-9
Identity = 51/171 (29.82%), Postives = 75/171 (43.86%), Query Frame = 1
Query:    1 MEPSDREVTSAVHAQRVVRGFLGRLAAIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPT------------------------YTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALF--GAEDV 435
            +   +R   +A   Q ++R  + R    R  + VYEKI+D  +  +YY+NT + +  W+ P  V        D D + P                          T++EAA M+Q A+RRRRG  M   L  SV  ++ D    A+YY N  + E +W KP L    A DV
Sbjct:  316 LSDDERRELAARCIQGMLRTHMARKHLCRLISSVYEKIWDENSKRFYYHNTRTKQVNWEKPRWVN-------DADLLTPRTRTKLVEAEEEAHHKQKLLELKSLLTDDEAARMVQRAYRRRRGFAMLLNLCRSVYERIYDPDQQAYYYHNTRTKEVTWEKPRLLRNAAADV 479          
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: W4GMM6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMM6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.950e-9
Identity = 41/131 (31.30%), Postives = 62/131 (47.33%), Query Frame = 1
Query:  103 YEKIFDPRTHAYYYYNTYSFETTWQPPAVV-----------------TRILGEFGDLDAIAPTYTEEE-AAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVED 441
            Y+K+ DP T+ +YYYN  +  + W  PA++                  R+  +    D + PT   ++ AAV +Q  +R R      R L+A    KV D      YY+N  +GE+ W+KP L GA DV +
Sbjct:  505 YQKVLDPDTNQWYYYNAKTNASQWAKPALLGTGDMIHHASSSTLKEPRRLATKTSPYDGLLPTARRKDVAAVKIQGLFRTRNARRHLRHLIAQTYRKVFDADANMCYYYNAKTGESHWTKPTLLGAADVPE 635          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE76_ECTSI6.220e-20091.10Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KU30_9PHAE2.510e-15062.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2SLX2_9STRA2.420e-2729.85Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZML4_9STRA3.240e-2729.85Hypothetical protein (Fragment) n=3 Tax=Pelagomona... [more]
A0A835Z3H8_9STRA2.990e-1939.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0XG08_9STRA2.330e-1031.69Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6XZP2_9STRA2.640e-1032.05Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0XKM6_9STRA3.590e-1032.00Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A8K1FGZ9_PYTOL1.470e-929.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4GMM6_9STRA1.950e-931.30Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1199contigEcto-sp13_S_contig1199:10237..15089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score611.3
Seed ortholog evalue4e-172
Seed eggNOG ortholog2880.D8LE76
Model size1503
KEGG koko:K19613
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size1503
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1199.1697.1prot_Ecto-sp13_S_contig1199.1697.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1199 10237..15089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462635.9313715-CDS-Ecto-sp13_S_contig1199:10236..103151681462635.9313715-CDS-Ecto-sp13_S_contig1199:10236..10315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 10237..10315 +
1681462635.9433408-CDS-Ecto-sp13_S_contig1199:10480..105781681462635.9433408-CDS-Ecto-sp13_S_contig1199:10480..10578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 10481..10578 +
1681462635.9532783-CDS-Ecto-sp13_S_contig1199:11036..111321681462635.9532783-CDS-Ecto-sp13_S_contig1199:11036..11132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 11037..11132 +
1681462635.963201-CDS-Ecto-sp13_S_contig1199:11843..119991681462635.963201-CDS-Ecto-sp13_S_contig1199:11843..11999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 11844..11999 +
1681462635.9725747-CDS-Ecto-sp13_S_contig1199:12284..123801681462635.9725747-CDS-Ecto-sp13_S_contig1199:12284..12380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 12285..12380 +
1681462635.9819353-CDS-Ecto-sp13_S_contig1199:13108..137161681462635.9819353-CDS-Ecto-sp13_S_contig1199:13108..13716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 13109..13716 +
1681462635.9910753-CDS-Ecto-sp13_S_contig1199:14171..143091681462635.9910753-CDS-Ecto-sp13_S_contig1199:14171..14309Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 14172..14309 +
1681462635.9992125-CDS-Ecto-sp13_S_contig1199:14600..146641681462635.9992125-CDS-Ecto-sp13_S_contig1199:14600..14664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 14601..14664 +
1681462636.008925-CDS-Ecto-sp13_S_contig1199:14921..150891681462636.008925-CDS-Ecto-sp13_S_contig1199:14921..15089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 14922..15089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1199.1697.1

>prot_Ecto-sp13_S_contig1199.1697.1 ID=prot_Ecto-sp13_S_contig1199.1697.1|Name=mRNA_Ecto-sp13_S_contig1199.1697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=501bp
MEPSDREVTSAVHAQRVVRGFLGRLAAIRRANLVYEKIFDPRTHAYYYYN
TYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGL
CMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPS
AMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEHQEQEQQQHQQRAG
GSSGDTNTAEEAGHEGWVWDDTSGWYYDEDLATQLLTGGVDVASKKGSDD
GNVTASVEVKSESESERDTDSDSEEDDSDEQAGEKRKQRRKRRRRSLAPR
NFPRSKAQRLVDEAEDSVDGARPEILNLSKLDMDRVTSRVYRLDWLQRLD
LSNNRLYRISPDLAGMESLVDVNFRHNRIQAIPDELEALTKLKHLQLGHN
RISGFRGNIYLISSLETLDLGHNRLKEVPLQVGDLQLLKRTREWEIGLRL
LRELVTLDVSYNRLKTWPPQVEECRNLRDLRLDHNKLQEASKGGTWSDTW
*
back to top

mRNA from alignment at Ecto-sp13_S_contig1199:10237..15089+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1199.1697.1 ID=mRNA_Ecto-sp13_S_contig1199.1697.1|Name=mRNA_Ecto-sp13_S_contig1199.1697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4853bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1199:10237..15089+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACCTTCAGACCGCGAAGTTACGTCTGCTGTTCACGCTCAGCGGGT TGTGCGCGGTTTCCTCGGACGACTCGCAGGTAAAAGGCGTGTGGAACCGT GCGTAACTCCGACGGGGATGCTTGTTTTCTCGCCTTGTAGTTTCGGTGAG GTCGGTTTGGGTGACGCTGACCTCTCCCTCGCCTTCCGTTGCGCCACTAC GTGTGTGTACCCCTCGGCCGTATTTCCTGACGAATCGTGGGCAGCAATTC GCCGAGCGAATTTGGTGTATGAGAAGATCTTCGATCCGAGGACTCACGCT TACTACTACTACAATACCTACAGCTTCGAAACAACATGGCAGGTGAGATG GACCTGAACTACAATGCCCAAGTCAAGCATACCTCCGATTCATCTGGGTT CCTACTTTCGTCTGGTCTACGGATTTGGAAATTGGAAAGTTGGAAGCGAA ATACGTGGATGTCATACATGTACATGTGTAAGAAGGCACATGTATGTGTG CTGTTCATGCGAGGAGATATGCAACACACAACAGCGAAGTCGTTATTGGC AGGATCCAACCACCGGGTCACAGGTTGAATTCGCCTGTTTATTCCATGTA CTTCATTGCCCGCGTGCTTCACAGCAGTGGTGGGCAAGATGAGCTCCTAT TGCCGTTGCTCTCGTCTCAGGACCTTTCACGCTTCGACTCCTGTGCAAGT CTGTGCACACTACACCTTCACACCCACAGCTATTTTTTTACCTCAGTGCA ACTTCACGGGCATGTCTTGTCACCGATGTCCTTTGCTCGGGCTACGCTAG CCACCTGCGGTGGTAACTCGTATCCTAGGCGAGTTCGGAGACCTGGATGC CATAGCTCCGACGTACACGGAAGAAGAGGCGGCTGTCATGTTGCAGGTAA AGCAGTCAACTGTAGACTACCATTCGTGGACCAGCGTATTGCGCAAGATA TCAAGCAGTATCACCTTCGTCCTCGCATCTGTTCTGAGCGTCAGTTAACA ACGTTCGACATACCATAGACGCACCAGCCGAGGATACACAGGGAAAACGT AAACACGAAAGTTTTTTTTTCTTGGAAAAGGGTTCCGCAATCTCTTCCCC TCTTATGCTGTGTGCACTCACGACGATGCGCTCGTCAAATGTTGTCTACT CTGCATGCCTTTGACTTTGTTCGTGTCGTAAGCTTCGTCATCACGTCATA AGCTTCGTCGTGTCTCTGTGACTAAGTCTGGTAGTGCAGCTGCTGACTTC TGAGGTGCGCGCTGTACCTGACTATGGGTTAGCAAAGCTTGCATCACAAA ACAGTATGTAGTCTAGCGTTTCCCTGCCCACCGTCTCTCTGTGTGTCACT CTGTTTCGCATCTTCGCCATCTCTGCAGCCTTCCGTTCCCCTTCCTGGGT GTAGGAGTCATTAGTCAATCAATTCTCGGAGATCTCGCACTATCACGGAC GTTTCCGGACGCATTTAGTTCTCCTGAAAAATAATAACGGAAAAGAGTAT TTGGATAACTCTATCAAAACTCTCGTCGATTCTTCAGCACAGGATGATCA CACACTAGCATGCGCTCATGTGTGTCCTATCTGCGACCAAAAACATTGAC AACCCAGGCAGCTTGGCGGCGGCGGCGAGGTCTCTGTATGACTCGCGCTC TGTTGGCCTCCGTGGTAAGCAAGGTGCTCGATGAATCTACTGGTGCACAC TACTACTTCAACGGTCTCAGTGGCGAGACATCTTGGTCCAAGCCCGCCCT CTTCGGTGCCGAGGTAAGTGACGTCAACATGCAAAAAGAAGGTTAGAACA AGCGCAACATAGCACCAGTGGATACATGGACGAACTGGGCCTACCAAAAA TACTAGTACTCGCTCTTCGCCAACAATCCACTTTTGTTTACTTGTTTCCA AGCCTCACCTACCTCCCACGTCAGTGGTTTGAGGACACAGCCGGAACTGC TCTACCTTAAGACGTCTCGCGATCATACCCCTTTGATGATGGCTTCCAAC ACCCTTACGACATCGATCATCTTCGGGCCAATTGCGCGCTGCCTACAGGA TGTCGAGGACTACCCGTCAGCGATGTTGCTTGCGGAAGGGCAAAACAGCG CGGAACCTTTCGGCACAGGGAGCTATGACTACGATCAATCTCAGGTACAT CAACAGATGCATGTCCCCTTGCACCAGTATTCTGTGTTCCCAATTGCAGA AACGTTGAGACGACGAAGGCTATGTTGTGGTCTCTCTTCGTTACCCTCAC CGTCACCAGAGTTGGGTGCAAGAACGGATTCACGTGTGGATAAGATGTTT GTAGCCATTGCCGCAAACAGCGGTACGAAAACCTGACCCGGTGGAGTTGT GGCATGCACTACAATTGTTTCAGCCAACCATTGAGTGAAAAAATGGTCTA TCATACGTAGTTAAATATTTTGGGTAAAACCCCTTGGCCACGGAAGGCAA CTGCCTCAGTTCGACCCGGATACACTTTCCAGGTACAAAGTAGAGGTCGA AATAGTTTCTTTCGTGCAGGCAACAAGAACGATTTACAGGAGGCCTCTCG TGAGGAGTCCCCTATGAGACGGTCAAGACGGTCATGAGAGCCTTCTGGGC GCTCATGAACCATCGAAACGATGAGGTGTAGCATTGTCGTTCTATCTGCC ATACCAGTGATCATGCTAAATCTAATGGCTGGATCCGCCCCTCGGTCACA CACCATATTCTCCAATAACACGATTGGTTCTGCTCAAACGCGAAAGATGT TACGTCGTCTAAAGTTGCCGCGTGTAACTCACAACACATTCATCTTCGTG ACAATGACACCAAGTCGAGATCTCGCCTCCCGACGATTTTTCTACCGTCA TTCCTGCGGGTTGACAAACTAGGGGTGGGTGGGACAAGAAGCTTGGACCA AAGAGCATCAGGAGCAGGAACAGCAACAGCATCAACAACGCGCTGGCGGT AGCAGCGGTGATACCAACACCGCCGAAGAGGCAGGCCACGAGGGGTGGGT GTGGGACGACACCTCCGGCTGGTATTACGACGAAGACCTGGCCACACAAC TCCTCACCGGTGGCGTAGACGTCGCTTCCAAGAAAGGGTCAGATGACGGC AACGTTACCGCTTCAGTGGAAGTCAAAAGCGAAAGCGAAAGCGAAAGGGA CACTGACAGCGATAGTGAGGAGGATGATAGCGACGAGCAAGCTGGTGAGA AAAGGAAACAAAGGCGGAAACGGAGGCGTCGCAGCTTAGCCCCCAGAAAC TTCCCCAGGTCCAAGGCCCAACGCTTGGTCGACGAAGCGGAGGATAGCGT AGACGGAGCGCGGCCCGAAATCTTGAACCTAAGCAAGTTGGACATGGATA GAGTTACCTCAAGGGTCTACAGGCTGGACTGGTTGCAAAGGTTGGATCTG TCCAACAACCGACTCTACAGGATTTCTCCCGACCTAGCTGGCATGGAGAG CCTTGTCGACGTTAACTTTCGGCATAACAGGTGGGTGAGACGTACTTCGC AGGCCATATTTATTCGCACGAGCCCTTCAAACACACGCCCATCGGACCAG CAGATACGAGCACGAAGGGGCGTTTGGTACCTCCTGGTGACCAAACATTC CGAGGGTTGTCGGTAGCAAGGCGGCGAAGATGCTGCCCTATGCGTTTCAA ACACGCGTTTCAAACACTTGTCAAACAAACATGAGCTTGCTTGTTCGTCA TCAGGAAGTATTTCGCGAGCAGTTTGGAACATACGCATTGCTTTTCGCCA AATCATCAGCTGCAATCTATGTTCGTGGTGCGGTACCGAAAATTTAGCTC GTGAACGCTTTCCTTCGTCTCCCTGTACCTGCGAACAAACAACAGTACTC TCTTACTCGGAGCGATTGATTTTGATCCTTCGAAAAAATTGAAATGTGAA CAATTTCCTTGCTCTGTTGTTTGGGGACGGTTTAGAATCCAGGCCATTCC AGATGAATTGGAAGCGCTGACGAAGCTCAAGCACCTGCAACTGGGGCACA ACCGAATTTCCGGCTTCAGAGGCAACATCTACCTCATCAGTTCGCTTGAG ACCCTTGATCTGGGGCACAATAGGTAATAATGTACCAGTACCGGCCCGCG TGTGGTAGCTGTTTCTCTCGCACGGGCACATGAGCCATATGCTTCACATG AAGACGCCGTAGCAAACGTCGCGCGAAATGTAAGCTTGGACCAATCAGTT GACCTGGAAGAAGCAATTAATTATGGTCAAACCCACCGTTGCCGCCCCAA CAACGCTACAGGTACGGTGCAGTTTCTTACAGCCGGCTACACCATTGCCT TGTGGGATGGCATAAACGTTGTATGGCTCACTCCAACTCTTCAACTTTCA TGTCGTATCTGCAGGCTGAAGGAGGTACCGCTCCAAGTGGGAGACTTGCA GCTGCTCAAGAGAACGCGCGAGTGGGAGGTAGGAAAGACAAAGCCCACCA TGATCCTCTTGTCGGGGGGATGCGGTTAAACATGGCCTGCAAAAGACGAA ACCGAAAATCTGGCGTGATGTTGTGCAGCTACCATACAGGTACATGACTC GCCCTACAACCCAACCATACGTTTTTCCAGTCGGAAGGGAATCGTACGTT TCCAGCACAAGCGTATCTGACACGGGATGGTCTCTTCTGCTCCGTTTGTA CATCGCCCCACCCGGTGCAACTTCTATTTTGCAAGATCGGCCTCCGTCTC CTCCGGGAACTGGTGACGCTCGACGTGAGCTACAACCGCCTCAAGACGTG GCCGCCGCAAGTGGAAGAGTGCAGGAACTTGCGGGACTTGCGTCTAGACC ACAACAAGCTTCAAGAGGCGAGCAAAGGCGGTACTTGGAGCGATACATGG TAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1199:10237..15089+

>mRNA_Ecto-sp13_S_contig1199.1697.1 ID=mRNA_Ecto-sp13_S_contig1199.1697.1|Name=mRNA_Ecto-sp13_S_contig1199.1697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1503bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1199:10237..15089+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACCTTCAGACCGCGAAGTTACGTCTGCTGTTCACGCTCAGCGGGT
TGTGCGCGGTTTCCTCGGACGACTCGCAGCAATTCGCCGAGCGAATTTGG
TGTATGAGAAGATCTTCGATCCGAGGACTCACGCTTACTACTACTACAAT
ACCTACAGCTTCGAAACAACATGGCAGCCACCTGCGGTGGTAACTCGTAT
CCTAGGCGAGTTCGGAGACCTGGATGCCATAGCTCCGACGTACACGGAAG
AAGAGGCGGCTGTCATGTTGCAGGCAGCTTGGCGGCGGCGGCGAGGTCTC
TGTATGACTCGCGCTCTGTTGGCCTCCGTGGTAAGCAAGGTGCTCGATGA
ATCTACTGGTGCACACTACTACTTCAACGGTCTCAGTGGCGAGACATCTT
GGTCCAAGCCCGCCCTCTTCGGTGCCGAGGATGTCGAGGACTACCCGTCA
GCGATGTTGCTTGCGGAAGGGCAAAACAGCGCGGAACCTTTCGGCACAGG
GAGCTATGACTACGATCAATCTCAGGGGTGGGTGGGACAAGAAGCTTGGA
CCAAAGAGCATCAGGAGCAGGAACAGCAACAGCATCAACAACGCGCTGGC
GGTAGCAGCGGTGATACCAACACCGCCGAAGAGGCAGGCCACGAGGGGTG
GGTGTGGGACGACACCTCCGGCTGGTATTACGACGAAGACCTGGCCACAC
AACTCCTCACCGGTGGCGTAGACGTCGCTTCCAAGAAAGGGTCAGATGAC
GGCAACGTTACCGCTTCAGTGGAAGTCAAAAGCGAAAGCGAAAGCGAAAG
GGACACTGACAGCGATAGTGAGGAGGATGATAGCGACGAGCAAGCTGGTG
AGAAAAGGAAACAAAGGCGGAAACGGAGGCGTCGCAGCTTAGCCCCCAGA
AACTTCCCCAGGTCCAAGGCCCAACGCTTGGTCGACGAAGCGGAGGATAG
CGTAGACGGAGCGCGGCCCGAAATCTTGAACCTAAGCAAGTTGGACATGG
ATAGAGTTACCTCAAGGGTCTACAGGCTGGACTGGTTGCAAAGGTTGGAT
CTGTCCAACAACCGACTCTACAGGATTTCTCCCGACCTAGCTGGCATGGA
GAGCCTTGTCGACGTTAACTTTCGGCATAACAGAATCCAGGCCATTCCAG
ATGAATTGGAAGCGCTGACGAAGCTCAAGCACCTGCAACTGGGGCACAAC
CGAATTTCCGGCTTCAGAGGCAACATCTACCTCATCAGTTCGCTTGAGAC
CCTTGATCTGGGGCACAATAGGCTGAAGGAGGTACCGCTCCAAGTGGGAG
ACTTGCAGCTGCTCAAGAGAACGCGCGAGTGGGAGATCGGCCTCCGTCTC
CTCCGGGAACTGGTGACGCTCGACGTGAGCTACAACCGCCTCAAGACGTG
GCCGCCGCAAGTGGAAGAGTGCAGGAACTTGCGGGACTTGCGTCTAGACC
ACAACAAGCTTCAAGAGGCGAGCAAAGGCGGTACTTGGAGCGATACATGG
TAG
back to top