mRNA_Ecto-sp13_S_contig1199.1697.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: D8LE76_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE76_ECTSI) HSP 1 Score: 603 bits (1554), Expect = 6.220e-200 Identity = 440/483 (91.10%), Postives = 447/483 (92.55%), Query Frame = 1
Query: 1 MEPSDREVTSAVHAQRVVRGFLGRLAAIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEHQEQXXXXXXXXAGGSSGDTNTAEEAGHEGWVWDDTSGWYYDEDLATQLLTGGVDVASKKGSDDGNVTASVEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDSVDGARPEILNLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISPDLAGMESLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEVPLQVGDLQLLKRTREWEIGLRLLRXXXXXXXXXXXXXXXXXXXEECRNLRDLRLD 1449
MEPSDREVTSAVHAQRVVRGFLGRLAAIR+ANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRG+ MTRALLASVVSKV DESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKE QE XXXXXXX AGGS+GDTNTAEEAG+EGWVWDDTSGWYYDEDLATQLLTGGVDV SKKGSD GNV+A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDS+DGARPEIL+LSKLDMDRVTSRVYRLDWLQRLD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LKEVPLQVGDLQLLKRTREWEIGLRLLR XXXXXXXXXXXXXXXXX EECRNLRDLRLD
Sbjct: 1 MEPSDREVTSAVHAQRVVRGFLGRLAAIRQANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGIRMTRALLASVVSKVFDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEQQEXXXXXXXXHAGGSNGDTNTAEEAGYEGWVWDDTSGWYYDEDLATQLLTGGVDVVSKKGSDGGNVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDSIDGARPEILDLSKLDMDRVTSRVYRLDWLQRLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLKEVPLQVGDLQLLKRTREWEIGLRLLREXXXXXXXXXXXXXXXXXVEECRNLRDLRLD 483
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A6H5KU30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU30_9PHAE) HSP 1 Score: 447 bits (1149), Expect = 2.510e-150 Identity = 319/507 (62.92%), Postives = 327/507 (64.50%), Query Frame = 1
Query: 1 MEPSDREVTSAVHAQRVVRGFLGRLA---------------------------------------------------AIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEHQEQXXXXXXXXAGGSSGDTNTAEEAGHEGWVWDDTSGWYYDEDLATQLLTGGVDVASKKGSDDGNVTASVEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDSVDGARPEILNLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISPDLAGMESLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------LKEVPLQVGDLQLLKRTREWEIG 1341
MEPSDREVTSAVHAQRVVRGFLGRLA AIR+ANLVYEKIFDPRTHAYYYYNT SFETTW AAWRRRRGL MTRALLASVVS SKPALFGAEDVEDYPSAMLLAEGQN+AEPFGTG YDYDQSQGWVGQEAWTKE +E XXXXXX AG S GD NTAEEAG+EGWVWDDTSGWYYDEDLATQLLTGGVDV SKKGSDDGNVTASVE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S+APRNFPRSKAQRLVDEAEDSVDGARPEIL+LSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRIS DLAGME+LVD XXXXX LKEVPLQVGDLQLLKRTREWE+G
Sbjct: 1 MEPSDREVTSAVHAQRVVRGFLGRLAGKGVSPCVTLTVMLVSSPCKVGLGDADFFLALRCATTCVYPSAVFPDESWAAIRQANLVYEKIFDPRTHAYYYYNTCSFETTWH--------------------------------AAWRRRRGLRMTRALLASVVSXXXXXXXXXXXXXXXXXXXXXXSKPALFGAEDVEDYPSAMLLAEGQNTAEPFGTGIYDYDQSQGWVGQEAWTKEQKEXXXXXXXQHAGVSDGDANTAEEAGYEGWVWDDTSGWYYDEDLATQLLTGGVDVVSKKGSDDGNVTASVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--SIAPRNFPRSKAQRLVDEAEDSVDGARPEILDLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISSDLAGMENLVDVNFRHNRWVREVSQARIQAIPDELEALTKLKHLQLGHNRISGFRGNLYXXXXXXXXXXXXXXLKEVPLQVGDLQLLKRTREWEVG 473
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A8J2SLX2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SLX2_9STRA) HSP 1 Score: 127 bits (318), Expect = 2.420e-27 Identity = 100/335 (29.85%), Postives = 152/335 (45.37%), Query Frame = 1
Query: 100 VYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEHQEQXXXXXXXXAGGSSGDTNTAEEAGHEGWVWDDTSGWYYDEDLATQLLTGGVDVASKKGSDDGNVTASVEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDSVDGARPEILNLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISPDLAGMES 1104
V+EKIFDP YYYYNT + E +W+ PA + + DL +APT+T+E+AA+ +Q AWRR + L R L+ASVVSKV DE + +YY+N +G+TSW+KP L G++D+E ++ ++G+ AE T + + S D + E G SG +T+ T SDD L PR +PRS+AQ+ +D+AED+ + + L+LS L M R++ R ++ L LD+S+N + R+ PD+ G+ S
Sbjct: 37 VWEKIFDPVQQIYYYYNTVTDEASWKRPAPLL-----WRDLGDVAPTFTDEQAAIYMQCAWRRLKFLRTVRRLVASVVSKVYDEHSQNYYYYNAQTGQTSWTKPLLLGSQDIEPGTQRLVSSDGRILAE---TAVVELE------------------------------SDDDSERESIG---------SG-------STRRRT------RSMSSDD--------------------------------------------LGLMPREYPRSEAQKRIDKAEDTPE---TDTLDLSGLKMARISFRALAIETLTHLDVSDNSITRLVPDIGGLAS 264
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A7S3ZML4_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZML4_9STRA) HSP 1 Score: 127 bits (318), Expect = 3.240e-27 Identity = 100/335 (29.85%), Postives = 152/335 (45.37%), Query Frame = 1
Query: 100 VYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNSAEPFGTGSYDYDQSQGWVGQEAWTKEHQEQXXXXXXXXAGGSSGDTNTAEEAGHEGWVWDDTSGWYYDEDLATQLLTGGVDVASKKGSDDGNVTASVEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPRNFPRSKAQRLVDEAEDSVDGARPEILNLSKLDMDRVTSRVYRLDWLQRLDLSNNRLYRISPDLAGMES 1104
V+EKIFDP YYYYNT + E +W+ PA + + DL +APT+T+E+AA+ +Q AWRR + L R L+ASVVSKV DE + +YY+N +G+TSW+KP L G++D+E ++ ++G+ AE T + + S D + E G SG +T+ T SDD L PR +PRS+AQ+ +D+AED+ + + L+LS L M R++ R ++ L LD+S+N + R+ PD+ G+ S
Sbjct: 55 VWEKIFDPVQQIYYYYNTVTDEASWKRPAPLL-----WRDLGDVAPTFTDEQAAIYMQCAWRRLKFLRTVRRLVASVVSKVYDEHSQNYYYYNAQTGQTSWTKPLLLGSQDIEPGTQRLVSSDGRILAE---TAVVELE------------------------------SDDDSERESIG---------SG-------STRRRT------RSMSSDD--------------------------------------------LGLMPREYPRSEAQKRIDKAEDTPE---TDTLDLSGLKMARISFRALAIETLTHLDVSDNSITRLVPDIGGLAS 282
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A835Z3H8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H8_9STRA) HSP 1 Score: 102 bits (255), Expect = 2.990e-19 Identity = 60/151 (39.74%), Postives = 82/151 (54.30%), Query Frame = 1
Query: 28 SAVHAQRVVRGFLGRLAAIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVEDYPSAMLLAEGQNS 480
+A+ Q++VRG+LGR A+RR N VYEKIFDP TH +YYYNT + ++W EAAV++QAAWRRR + R+L+A+ VS VLDE+ KPAL G+E++E Y +L A G +S
Sbjct: 17 AALGVQKLVRGWLGRKQALRRLNEVYEKIFDPHTHGHYYYNTVTDASSW--------------------------EAAVLVQAAWRRRLAKRLARSLVAASVSMVLDEAXXXXXXXXXXXXXXXXXKPALLGSEELEPYQRLLLTAGGADS 141
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A6G0XG08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XG08_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.330e-10 Identity = 45/142 (31.69%), Postives = 71/142 (50.00%), Query Frame = 1
Query: 22 VTSAVHAQRVVRGFLGR----LAAIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDV 435
VT A R+++ L R +I+ ++K++DP TH Y+YY+ + E+TW P +L +F ++ T E AAV +Q +R + L + KV DE+ A+YYFN +GE+ W+KP F D
Sbjct: 1076 VTDPDEAARIIQAALSRNKCQTQSIKSLVGRFQKVYDPNTHRYFYYDQVTKESTWTAPL----LLKKFQKANSPTKYKTPESAAVRIQGIFRLHKARQEALQLAQASYEKVFDETIQAYYYFNTRTGESQWTKPKCFRDADA 1213
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A5D6XZP2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZP2_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.640e-10 Identity = 50/156 (32.05%), Postives = 73/156 (46.79%), Query Frame = 1
Query: 13 DREVTSAVHAQRVVRGFLGRLAAIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAP---------------------TYTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPAL 417
++E +AV Q ++R R + + VYEKI+D + +YY+NT + W P V+ D D ++P T TE +AAVMLQ A+RR+RG L V ++ D A+YY N + ET+W KPAL
Sbjct: 326 EQENDAAVRIQGMLRAHSARAHMRKLISSVYEKIWDSSSARFYYHNTRTKHVKWAKPRWVS-------DADLLSPRTRQQRAEADERSAKLAVLRATITEGDAAVMLQRAYRRKRGFEALLQLCRQVYERIFDPHQNAYYYHNTRTEETTWEKPAL 474
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A6G0XKM6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKM6_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 3.590e-10 Identity = 48/150 (32.00%), Postives = 71/150 (47.33%), Query Frame = 1
Query: 52 VRGFLGRLAAIRRANLV----YEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTE-----------------EEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVE 438
++G A RR L+ Y+K+ DP + YYYYN + E+ W P ++LG D+D+ T E AA+ LQ +R R R L+A KVLD + +YY+N +GE+ W+KP L G +DV+
Sbjct: 650 IQGLFRSRNARRRLRLLIAQTYQKVLDPESREYYYYNIKTGESQWNKP----KLLG-VSDIDSSPGTAKTPRPQANRLATLETPRRFEAAAIRLQCLFRARNARRRLRHLIAQTFQKVLDADSQQYYYYNTKTGESQWTKPVLLGDDDVD 794
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: A0A8K1FGZ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGZ9_PYTOL) HSP 1 Score: 71.6 bits (174), Expect = 1.470e-9 Identity = 51/171 (29.82%), Postives = 75/171 (43.86%), Query Frame = 1
Query: 1 MEPSDREVTSAVHAQRVVRGFLGRLAAIRRANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPT------------------------YTEEEAAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALF--GAEDV 435
+ +R +A Q ++R + R R + VYEKI+D + +YY+NT + + W+ P V D D + P T++EAA M+Q A+RRRRG M L SV ++ D A+YY N + E +W KP L A DV
Sbjct: 316 LSDDERRELAARCIQGMLRTHMARKHLCRLISSVYEKIWDENSKRFYYHNTRTKQVNWEKPRWVN-------DADLLTPRTRTKLVEAEEEAHHKQKLLELKSLLTDDEAARMVQRAYRRRRGFAMLLNLCRSVYERIYDPDQQAYYYHNTRTKEVTWEKPRLLRNAAADV 479
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Match: W4GMM6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMM6_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.950e-9 Identity = 41/131 (31.30%), Postives = 62/131 (47.33%), Query Frame = 1
Query: 103 YEKIFDPRTHAYYYYNTYSFETTWQPPAVV-----------------TRILGEFGDLDAIAPTYTEEE-AAVMLQAAWRRRRGLCMTRALLASVVSKVLDESTGAHYYFNGLSGETSWSKPALFGAEDVED 441
Y+K+ DP T+ +YYYN + + W PA++ R+ + D + PT ++ AAV +Q +R R R L+A KV D YY+N +GE+ W+KP L GA DV +
Sbjct: 505 YQKVLDPDTNQWYYYNAKTNASQWAKPALLGTGDMIHHASSSTLKEPRRLATKTSPYDGLLPTARRKDVAAVKIQGLFRTRNARRHLRHLIAQTYRKVFDADANMCYYYNAKTGESHWTKPTLLGAADVPE 635 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1199.1697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1199.1697.1 >prot_Ecto-sp13_S_contig1199.1697.1 ID=prot_Ecto-sp13_S_contig1199.1697.1|Name=mRNA_Ecto-sp13_S_contig1199.1697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=501bp MEPSDREVTSAVHAQRVVRGFLGRLAAIRRANLVYEKIFDPRTHAYYYYNback to top mRNA from alignment at Ecto-sp13_S_contig1199:10237..15089+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1199.1697.1 ID=mRNA_Ecto-sp13_S_contig1199.1697.1|Name=mRNA_Ecto-sp13_S_contig1199.1697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4853bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1199:10237..15089+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1199:10237..15089+ >mRNA_Ecto-sp13_S_contig1199.1697.1 ID=mRNA_Ecto-sp13_S_contig1199.1697.1|Name=mRNA_Ecto-sp13_S_contig1199.1697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1503bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1199:10237..15089+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |