mRNA_Ecto-sp13_S_contig11988.1694.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11988.1694.1
Unique NamemRNA_Ecto-sp13_S_contig11988.1694.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11988.1694.1 vs. uniprot
Match: Q8QNJ9_ESV1K (EsV-1-74 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ9_ESV1K)

HSP 1 Score: 538 bits (1385), Expect = 7.490e-186
Identity = 322/369 (87.26%), Postives = 329/369 (89.16%), Query Frame = 1 
Query:  343 DMFSTPSEISTDFDSASDANSTTTDKHSVKFDLQPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGNNVGAADITREMEKLAMTNISLPHIPSPALSPGEYMYNVISDVLGTNNKNNLQRILARTPLPIAIKYLHHIAQKAFATGNRDIHKVVFDINKKYNIVSDLYLDVFAKGDSKSINNAMNYLEKTAQAFKTGAEFNTDELLKFFTPEFIAMNLIQSGNIGTYDKVMTEFKNEEIRISRGFHVAKPLLAAYFGVPSFFSNQKRYSFNRDIIVLAICGGSTETLDYVVKKTKIGKISHDIVLEARSCQPIPAHMMKHLVEKYRVPEMSV 1449
            DMFSTPSEISTDFDS SDA+STTTDKHSV+FDLQPK XXXXXXXXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXX            AGNN GA DIT EM+KLAMT+IS  HIPSPALSPGEYMYNVISDVLGTNNK NLQRILARTPLPIAIKYLHHIAQKAFATGNRDIHKVV DINKKYNIVSDLYLD FAKGDSKSINNAMNYLEKTAQAFKTGAEFNTDELLKFFTPEFIAMNLIQSGNIG YDKVMTEFKNEEIRISRGFHVAKPLLAAYFGVPSFFSNQKRYSFNRDIIVLAICGGSTETLDYVVKKTKIGKISHD+VLEARSCQPIPAHMMKHLVEK+ VPEMS+
Sbjct:  146 DMFSTPSEISTDFDSTSDASSTTTDKHSVRFDLQPKSXXXXXXXXXXXXXXXXXXXXXXXXXKGECSADTKAAKATKAXXXXXXXXXXXXNKKADVD-----AGNNAGADDITSEMKKLAMTSISPAHIPSPALSPGEYMYNVISDVLGTNNKKNLQRILARTPLPIAIKYLHHIAQKAFATGNRDIHKVVVDINKKYNIVSDLYLDAFAKGDSKSINNAMNYLEKTAQAFKTGAEFNTDELLKFFTPEFIAMNLIQSGNIGAYDKVMTEFKNEEIRISRGFHVAKPLLAAYFGVPSFFSNQKRYSFNRDIIVLAICGGSTETLDYVVKKTKIGKISHDVVLEARSCQPIPAHMMKHLVEKFNVPEMSI 509
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BLAST of mRNA_Ecto-sp13_S_contig11988.1694.1 vs. uniprot
Match: D8LPA6_ECTSI (EsV-1-74 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA6_ECTSI)

HSP 1 Score: 533 bits (1374), Expect = 3.030e-184
Identity = 316/373 (84.72%), Postives = 324/373 (86.86%), Query Frame = 1 
Query:  334 GEHDMFSTPSEISTDFDSASDANSTTTDKHSVKFDLQPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGNNVGAADITREMEKLAMTNISLPHIPSPALSPGEYMYNVISDVLGTNNKNNLQRILARTPLPIAIKYLHHIAQKAFATGNRDIHKVVFDINKKYNIVSDLYLDVFAKGDSKSINNAMNYLEKTAQAFKTGAEFNTDELLKFFTPEFIAMNLIQSGNIGTYDKVMTEFKNEEIRISRGFHVAKPLLAAYFGVPSFFSNQKRYSFNRDIIVLAICGGSTETLDYVVKKTKIGKISHDIVLEARSCQPIPAHMMKHLVEKYRVPEMSV 1449
            G+ +MFSTPSEISTDFDSASDA+STTTDKHSV+FD+Q K                          XXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXX   A NN GA DITREMEKLAMTNIS  HIPSPALSPGEYMYNVISDVLGTNNK NLQRILARTPLPIAIKYLHHIAQKAFATGNRDIHKVV DINKKYNIVSDLYLD FAKGDSKSI+NAMNYLEKTAQAF+TGAEFNTDELLKFFTPEFIAMNLIQSGNI  YDKVMTEFKNEEIRISRGFHVAKPLLAAYFGVPSFFSNQKRYSFNRDIIVLAICGGSTETLDYVVKKTKIGKISHDIVLEARSCQPIPAHMMKHLVEK+ VPEMSV
Sbjct:  133 GQDEMFSTPSEISTDFDSASDASSTTTDKHSVRFDMQSKSKSIPNDSPATCSTVKDQFRADTKATXXXXXXXXXXXXXXXXDTAKAEAXXXXXXXXXXXXXXXDVDARNNAGADDITREMEKLAMTNISPAHIPSPALSPGEYMYNVISDVLGTNNKKNLQRILARTPLPIAIKYLHHIAQKAFATGNRDIHKVVVDINKKYNIVSDLYLDAFAKGDSKSISNAMNYLEKTAQAFRTGAEFNTDELLKFFTPEFIAMNLIQSGNIAAYDKVMTEFKNEEIRISRGFHVAKPLLAAYFGVPSFFSNQKRYSFNRDIIVLAICGGSTETLDYVVKKTKIGKISHDIVLEARSCQPIPAHMMKHLVEKFSVPEMSV 505
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11988.1694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNJ9_ESV1K7.490e-18687.26EsV-1-74 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPA6_ECTSI3.030e-18484.72EsV-1-74 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11988contigEcto-sp13_S_contig11988:3538..5069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1452
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEsV-1-74
Ec32 orthologEc-06_006060.1
Cds size1452
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462635.511926-CDS-Ecto-sp13_S_contig11988:3537..40911681462635.511926-CDS-Ecto-sp13_S_contig11988:3537..4091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11988 3538..4091 +
1681462635.5224159-CDS-Ecto-sp13_S_contig11988:4171..50691681462635.5224159-CDS-Ecto-sp13_S_contig11988:4171..5069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11988 4172..5069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11988.1694.1prot_Ecto-sp13_S_contig11988.1694.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11988 3538..5069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11988.1694.1

>prot_Ecto-sp13_S_contig11988.1694.1 ID=prot_Ecto-sp13_S_contig11988.1694.1|Name=mRNA_Ecto-sp13_S_contig11988.1694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=484bp
MYQPQQQMQMRQMQQRQMQMQMHMRQQQQQQQQQQQMQQMQQEQHQRQQQ
QQQQQLFQARKKQVREKQQQNHTQAGNDDEEENNESDSDGDSDSDNDSVS
DSDDDGEDAGDGEHDMFSTPSEISTDFDSASDANSTTTDKHSVKFDLQPK
SKSKPKSNSTHKSKSKSKDSSSFKTKTEKTKTKHEAAAKTAKARAKKNRK
VDADADADADADADADAGNNVGAADITREMEKLAMTNISLPHIPSPALSP
GEYMYNVISDVLGTNNKNNLQRILARTPLPIAIKYLHHIAQKAFATGNRD
IHKVVFDINKKYNIVSDLYLDVFAKGDSKSINNAMNYLEKTAQAFKTGAE
FNTDELLKFFTPEFIAMNLIQSGNIGTYDKVMTEFKNEEIRISRGFHVAK
PLLAAYFGVPSFFSNQKRYSFNRDIIVLAICGGSTETLDYVVKKTKIGKI
SHDIVLEARSCQPIPAHMMKHLVEKYRVPEMSV*
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mRNA from alignment at Ecto-sp13_S_contig11988:3538..5069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11988.1694.1 ID=mRNA_Ecto-sp13_S_contig11988.1694.1|Name=mRNA_Ecto-sp13_S_contig11988.1694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1532bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11988:3538..5069+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACCAACCCCAGCAACAGATGCAGATGCGTCAGATGCAACAGCGACA
GATGCAGATGCAGATGCACATGCGACAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCAAATGCAGCAAATGCAGCAGGAGCAGCATCAAAGGCAGCAACAG
CAGCAACAGCAACAACTTTTTCAGGCGAGAAAGAAACAGGTGCGCGAGAA
GCAACAACAGAACCACACGCAGGCGGGAAACGACGACGAAGAGGAAAATA
ACGAGAGCGACAGTGACGGCGACAGCGACAGCGACAACGACAGCGTCAGC
GACAGCGACGACGACGGTGAAGACGCTGGCGACGGCGAACATGATATGTT
TTCAACGCCGAGCGAAATTTCCACAGACTTTGATTCGGCGTCGGACGCTA
ATTCGACAACTACCGATAAACACTCCGTAAAGTTCGACTTGCAACCCAAG
TCCAAGTCCAAGCCGAAGTCCAATTCCACGCACAAGTCCAAGTCCAAGTC
CAAGGATTCGTCCTCATTCAAGACAAAGACAGAGAAAACGAAAACCAAGC
ACGAGTTCAGGGCCGACGCCAAGGATAGCAAGGATGCCAAGGATGCCAAG
GAGCCAAGGACGCCAAGGACGCCAAGGACGCCAGGGCTGCGGCCAAGACG
GCCAAAGCACGTGCTAAGAAGAACAGGAAAGTCGACGCCGACGCCGACGC
CGACGCCGACGCCGACGCTGACGCCGACGCCGGGAACAACGTGGGTGCCG
CCGACATCACCAGAGAGATGGAAAAACTCGCGATGACAAACATCTCCCTC
CCACATATCCCGTCGCCAGCTCTGTCTCCCGGCGAGTACATGTACAACGT
CATTTCCGACGTCCTCGGCACCAACAACAAGAATAACTTGCAGAGGATTC
TGGCTAGAACCCCGTTGCCGATCGCTATCAAGTACCTGCACCATATCGCG
CAGAAAGCTTTCGCTACCGGCAACAGAGACATCCACAAGGTCGTCTTCGA
CATCAACAAGAAGTACAACATCGTGTCCGACCTGTACCTCGATGTGTTCG
CCAAGGGGGACAGCAAGTCCATCAACAACGCGATGAACTACCTCGAAAAG
ACGGCACAGGCGTTCAAGACGGGCGCAGAGTTCAACACCGACGAGCTACT
CAAGTTCTTCACACCGGAGTTCATCGCCATGAACCTCATCCAGTCCGGAA
ACATTGGAACGTACGATAAGGTCATGACCGAGTTCAAGAACGAAGAGATT
CGCATCTCTAGAGGATTCCACGTCGCCAAGCCTCTTCTGGCGGCCTACTT
CGGTGTCCCATCCTTCTTCTCGAACCAGAAGAGATACAGCTTCAATCGAG
ACATCATTGTCCTCGCCATCTGCGGCGGCAGCACGGAGACGCTTGACTAC
GTAGTCAAGAAGACCAAGATCGGCAAGATATCGCACGACATCGTCCTCGA
GGCCCGGTCGTGCCAACCGATCCCGGCGCACATGATGAAGCATCTTGTTG
AAAAATACCGCGTCCCGGAAATGTCCGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11988:3538..5069+

>mRNA_Ecto-sp13_S_contig11988.1694.1 ID=mRNA_Ecto-sp13_S_contig11988.1694.1|Name=mRNA_Ecto-sp13_S_contig11988.1694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1452bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11988:3538..5069+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACCAACCCCAGCAACAGATGCAGATGCGTCAGATGCAACAGCGACA
GATGCAGATGCAGATGCACATGCGACAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCAAATGCAGCAAATGCAGCAGGAGCAGCATCAAAGGCAGCAACAG
CAGCAACAGCAACAACTTTTTCAGGCGAGAAAGAAACAGGTGCGCGAGAA
GCAACAACAGAACCACACGCAGGCGGGAAACGACGACGAAGAGGAAAATA
ACGAGAGCGACAGTGACGGCGACAGCGACAGCGACAACGACAGCGTCAGC
GACAGCGACGACGACGGTGAAGACGCTGGCGACGGCGAACATGATATGTT
TTCAACGCCGAGCGAAATTTCCACAGACTTTGATTCGGCGTCGGACGCTA
ATTCGACAACTACCGATAAACACTCCGTAAAGTTCGACTTGCAACCCAAG
TCCAAGTCCAAGCCGAAGTCCAATTCCACGCACAAGTCCAAGTCCAAGTC
CAAGGATTCGTCCTCATTCAAGACAAAGACAGAGAAAACGAAAACCAAGC
ACGAGGCTGCGGCCAAGACGGCCAAAGCACGTGCTAAGAAGAACAGGAAA
GTCGACGCCGACGCCGACGCCGACGCCGACGCCGACGCTGACGCCGACGC
CGGGAACAACGTGGGTGCCGCCGACATCACCAGAGAGATGGAAAAACTCG
CGATGACAAACATCTCCCTCCCACATATCCCGTCGCCAGCTCTGTCTCCC
GGCGAGTACATGTACAACGTCATTTCCGACGTCCTCGGCACCAACAACAA
GAATAACTTGCAGAGGATTCTGGCTAGAACCCCGTTGCCGATCGCTATCA
AGTACCTGCACCATATCGCGCAGAAAGCTTTCGCTACCGGCAACAGAGAC
ATCCACAAGGTCGTCTTCGACATCAACAAGAAGTACAACATCGTGTCCGA
CCTGTACCTCGATGTGTTCGCCAAGGGGGACAGCAAGTCCATCAACAACG
CGATGAACTACCTCGAAAAGACGGCACAGGCGTTCAAGACGGGCGCAGAG
TTCAACACCGACGAGCTACTCAAGTTCTTCACACCGGAGTTCATCGCCAT
GAACCTCATCCAGTCCGGAAACATTGGAACGTACGATAAGGTCATGACCG
AGTTCAAGAACGAAGAGATTCGCATCTCTAGAGGATTCCACGTCGCCAAG
CCTCTTCTGGCGGCCTACTTCGGTGTCCCATCCTTCTTCTCGAACCAGAA
GAGATACAGCTTCAATCGAGACATCATTGTCCTCGCCATCTGCGGCGGCA
GCACGGAGACGCTTGACTACGTAGTCAAGAAGACCAAGATCGGCAAGATA
TCGCACGACATCGTCCTCGAGGCCCGGTCGTGCCAACCGATCCCGGCGCA
CATGATGAAGCATCTTGTTGAAAAATACCGCGTCCCGGAAATGTCCGTGT
AG
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