mRNA_Ecto-sp13_S_contig11988.1692.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11988.1692.1
Unique NamemRNA_Ecto-sp13_S_contig11988.1692.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11988.1692.1 vs. uniprot
Match: Q8QNK2_ESV1K (EsV-1-71 n=2 Tax=root TaxID=1 RepID=Q8QNK2_ESV1K)

HSP 1 Score: 575 bits (1483), Expect = 1.990e-206
Identity = 297/320 (92.81%), Postives = 311/320 (97.19%), Query Frame = 1 
Query:    1 MTSAFATDLTQYPISISGDQIVQNIIQVAQSDGINAVSLDHDFYGISQDGRVFSMASFRVVESGPNTNTGTLELHVYNSDGVSVPILTIGEDGTTIEGSLNVKGGHTSFETTSVVVEDKDMVLASGATSVEHLDKGGIILGTGESGTKDMLYDLDGDMWKSNIGINFDTGAAFTIGDAQTILNGTGFTIGEVSLTDGSLQLAPDISLGTAGLEIGNISVTPLGGLVIGSPDGSDVDSTVVLDKSGLTICEKINLGVDSGLSIGSNVLLDEQGLYLKNTEASLYLGQTGWKIAYDSSSQHLLFEFYDADSSSYVTKAEFKA 960
            M+SA+ATDL+QYPISISGDQIVQNIIQVAQSDGI+AVSLDHDFYGISQDGRVFSMASFRVVESGPNTNTGTLELHVYNSDGVSVPILTIGEDGTTIEGSLNVKGGHTS ETTSVVVEDKDM+LASGATSV+HLD+GGIILGT ESGTK+MLYDLDGDMWKSNIGIN DTGAAFT+GDAQTIL+GTG TIG VSLT+GSLQLAPDISLGT GL IG+ISVTPLGGLVIGSPDGSDVDSTVVLDKSGLTI E+INLGVDSGLSIGSNVLLDEQGLYLKNTEA+LYLGQTGWKIAYDSSSQHLLFEFYDA SSSYVTKAEFKA
Sbjct:    1 MSSAYATDLSQYPISISGDQIVQNIIQVAQSDGIDAVSLDHDFYGISQDGRVFSMASFRVVESGPNTNTGTLELHVYNSDGVSVPILTIGEDGTTIEGSLNVKGGHTSLETTSVVVEDKDMILASGATSVDHLDQGGIILGTDESGTKNMLYDLDGDMWKSNIGINVDTGAAFTVGDAQTILDGTGLTIGGVSLTEGSLQLAPDISLGTEGLAIGDISVTPLGGLVIGSPDGSDVDSTVVLDKSGLTIGEEINLGVDSGLSIGSNVLLDEQGLYLKNTEAALYLGQTGWKIAYDSSSQHLLFEFYDAGSSSYVTKAEFKA 320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11988.1692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNK2_ESV1K1.990e-20692.81EsV-1-71 n=2 Tax=root TaxID=1 RepID=Q8QNK2_ESV1K[more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11988contigEcto-sp13_S_contig11988:1311..2273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size963
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-71
Ec32 orthologEc-06_006090.1
Cds size963
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462635.4427922-CDS-Ecto-sp13_S_contig11988:1310..22731681462635.4427922-CDS-Ecto-sp13_S_contig11988:1310..2273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11988 1311..2273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11988.1692.1prot_Ecto-sp13_S_contig11988.1692.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11988 1311..2273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11988.1692.1

>prot_Ecto-sp13_S_contig11988.1692.1 ID=prot_Ecto-sp13_S_contig11988.1692.1|Name=mRNA_Ecto-sp13_S_contig11988.1692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=321bp
MTSAFATDLTQYPISISGDQIVQNIIQVAQSDGINAVSLDHDFYGISQDG
RVFSMASFRVVESGPNTNTGTLELHVYNSDGVSVPILTIGEDGTTIEGSL
NVKGGHTSFETTSVVVEDKDMVLASGATSVEHLDKGGIILGTGESGTKDM
LYDLDGDMWKSNIGINFDTGAAFTIGDAQTILNGTGFTIGEVSLTDGSLQ
LAPDISLGTAGLEIGNISVTPLGGLVIGSPDGSDVDSTVVLDKSGLTICE
KINLGVDSGLSIGSNVLLDEQGLYLKNTEASLYLGQTGWKIAYDSSSQHL
LFEFYDADSSSYVTKAEFKA*
back to top

mRNA from alignment at Ecto-sp13_S_contig11988:1311..2273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11988.1692.1 ID=mRNA_Ecto-sp13_S_contig11988.1692.1|Name=mRNA_Ecto-sp13_S_contig11988.1692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11988:1311..2273+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCCGCCTTTGCCACAGACCTAACGCAGTACCCAATTTCTATTTC
AGGTGATCAAATCGTTCAAAACATCATACAAGTTGCCCAGTCCGACGGGA
TAAACGCCGTTTCTCTCGACCATGACTTTTACGGAATCAGTCAAGATGGA
AGAGTCTTTTCCATGGCCTCCTTCCGAGTGGTGGAGAGCGGCCCGAACAC
GAACACGGGAACGTTGGAGTTGCACGTTTACAACTCGGACGGCGTCTCGG
TGCCAATCCTCACGATTGGAGAGGATGGGACGACAATCGAGGGATCGCTC
AATGTCAAGGGTGGCCACACATCGTTCGAAACCACCTCGGTCGTCGTGGA
AGACAAGGACATGGTGTTGGCCAGTGGCGCCACGTCCGTCGAGCACCTGG
ACAAAGGAGGTATCATCTTGGGGACGGGTGAATCGGGAACAAAGGATATG
CTCTACGACCTCGACGGCGACATGTGGAAATCCAACATCGGCATCAACTT
CGACACCGGTGCCGCCTTCACCATCGGCGACGCGCAAACGATATTGAACG
GCACGGGTTTTACGATCGGAGAGGTCTCTCTCACAGACGGCAGCCTACAA
CTCGCGCCAGATATCTCTCTGGGAACGGCGGGGCTGGAAATCGGCAACAT
TTCGGTCACACCACTCGGCGGTCTTGTTATCGGCAGCCCCGATGGGTCGG
ATGTCGATTCAACAGTCGTTCTCGACAAGTCGGGATTGACGATATGTGAA
AAAATAAATCTCGGTGTAGATTCGGGATTGTCTATTGGTTCCAACGTTCT
GCTCGACGAACAAGGTCTGTACCTAAAAAACACAGAAGCATCACTGTACC
TAGGTCAAACAGGGTGGAAGATCGCGTACGACTCGTCGTCACAGCACCTA
CTTTTCGAGTTCTACGACGCCGACTCCAGCTCGTACGTAACAAAGGCAGA
ATTCAAAGCTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11988:1311..2273+

>mRNA_Ecto-sp13_S_contig11988.1692.1 ID=mRNA_Ecto-sp13_S_contig11988.1692.1|Name=mRNA_Ecto-sp13_S_contig11988.1692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11988:1311..2273+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCCGCCTTTGCCACAGACCTAACGCAGTACCCAATTTCTATTTC
AGGTGATCAAATCGTTCAAAACATCATACAAGTTGCCCAGTCCGACGGGA
TAAACGCCGTTTCTCTCGACCATGACTTTTACGGAATCAGTCAAGATGGA
AGAGTCTTTTCCATGGCCTCCTTCCGAGTGGTGGAGAGCGGCCCGAACAC
GAACACGGGAACGTTGGAGTTGCACGTTTACAACTCGGACGGCGTCTCGG
TGCCAATCCTCACGATTGGAGAGGATGGGACGACAATCGAGGGATCGCTC
AATGTCAAGGGTGGCCACACATCGTTCGAAACCACCTCGGTCGTCGTGGA
AGACAAGGACATGGTGTTGGCCAGTGGCGCCACGTCCGTCGAGCACCTGG
ACAAAGGAGGTATCATCTTGGGGACGGGTGAATCGGGAACAAAGGATATG
CTCTACGACCTCGACGGCGACATGTGGAAATCCAACATCGGCATCAACTT
CGACACCGGTGCCGCCTTCACCATCGGCGACGCGCAAACGATATTGAACG
GCACGGGTTTTACGATCGGAGAGGTCTCTCTCACAGACGGCAGCCTACAA
CTCGCGCCAGATATCTCTCTGGGAACGGCGGGGCTGGAAATCGGCAACAT
TTCGGTCACACCACTCGGCGGTCTTGTTATCGGCAGCCCCGATGGGTCGG
ATGTCGATTCAACAGTCGTTCTCGACAAGTCGGGATTGACGATATGTGAA
AAAATAAATCTCGGTGTAGATTCGGGATTGTCTATTGGTTCCAACGTTCT
GCTCGACGAACAAGGTCTGTACCTAAAAAACACAGAAGCATCACTGTACC
TAGGTCAAACAGGGTGGAAGATCGCGTACGACTCGTCGTCACAGCACCTA
CTTTTCGAGTTCTACGACGCCGACTCCAGCTCGTACGTAACAAAGGCAGA
ATTCAAAGCTTAG
back to top