mRNA_Ecto-sp13_S_contig11988.1691.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11988.1691.1
Unique NamemRNA_Ecto-sp13_S_contig11988.1691.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11988.1691.1 vs. uniprot
Match: Q8QNK3_ESV1K (EsV-1-70 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNK3_ESV1K)

HSP 1 Score: 745 bits (1923), Expect = 1.940e-269
Identity = 361/402 (89.80%), Postives = 385/402 (95.77%), Query Frame = 1
Query:    1 AWELTPSPAFDNFARRPGVYKTLLKKIDNWATLNGSKKLSSVKKVIRIRVSDKMQKTCGKPNALGVFDNSADMATIYGDTDHKSIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKLLANEDKVLRFPSIQKILDVTKPIDCIGAIPAEFRAFVKSSKGNSVSTATIPVPSKTSANEVVYTYNFEAAVPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRGDGGCEKGNKAVVAALARSIEIKDLVQTLQGFQSVSVYTKDLLDRMLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFRHIASKTSN-FCNDIYSGLKIEFKTIEVFKEYCTTKTFMSFKRRDEGEWRQFIVDTRKICCILHAWSRKSDADKFVKEHGCGDRYLCRILEELV 1203
            AWE TPSP FDNFARRPGVYKTLLKKIDNWATLNG KKLSSVKK+IR+RVSDKM+    KPNALGVFDN+ADMATIYGDTDH+SIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHK LANED+VLRFPS+QKILD+TKPIDCIGAIPAEFR FVKSS+GNSVST TIPVPSKT+AN+VVYT+NFE +VPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRG+GGCEKGNKAVVAALARSIE+KDLVQTLQG QS+SVYTKDLLD+MLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFR IASKTS+ FC +IYSGL+IEFKTIEVF+EYCTTKTFM+FKRRDEGEWRQFIVDTRKICCILHAWSRK DAD+FVKE+GCGDRYLCRIL ELV
Sbjct:   81 AWEPTPSPTFDNFARRPGVYKTLLKKIDNWATLNGGKKLSSVKKLIRVRVSDKMKTMREKPNALGVFDNAADMATIYGDTDHESIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKQLANEDRVLRFPSMQKILDITKPIDCIGAIPAEFRTFVKSSRGNSVSTVTIPVPSKTNANDVVYTHNFEVSVPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRGEGGCEKGNKAVVAALARSIEMKDLVQTLQGTQSISVYTKDLLDQMLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFRRIASKTSSEFCTEIYSGLRIEFKTIEVFREYCTTKTFMAFKRRDEGEWRQFIVDTRKICCILHAWSRKRDADEFVKEYGCGDRYLCRILGELV 482          
BLAST of mRNA_Ecto-sp13_S_contig11988.1691.1 vs. uniprot
Match: D8LPA2_ECTSI (EsV-1-70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA2_ECTSI)

HSP 1 Score: 673 bits (1737), Expect = 4.030e-241
Identity = 327/401 (81.55%), Postives = 361/401 (90.02%), Query Frame = 1
Query:    1 AWELTPSPAFDNFARRPGVYKTLLKKIDNWATLNGSKKLSSVKKVIRIRVSDKMQKTCGKPNALGVFDNSADMATIYGDTDHKSIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKLLANEDKVLRFPSIQKILDVTKPIDCIGAIPAEFRAFVKSSKGNSVSTATIPVPSKTSANEVVYTYNFEAAVPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRGDGGCEKGNKAVVAALARSIEIKDLVQTLQGFQSVSVYTKDLLDRMLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFRHIASKTSN-FCNDIYSGLKIEFKTIEVFKEYCTTKTFMSFKRRDEGEWRQFIVDTRKICCILHAWSRKSDADKFVKEHGCGDRYLCRILEEL 1200
            AWE T SP  +NF RRPGVYKTLL+K+DNWATL+GSKKL SVKK+IRIRVSDKM+K   KPNALGVFD++ADMATI+G+T+ KS I+SLHLLGKYP++DPRFYIHMVYRYYMNE+H  LA EDKVLRFPS QKILD TKPIDCIGAIPAEFR FV+  +GNSVST T PVPSKT+ANEVVYT+NFEA VPWVPVMRAMI+DLFVNLN RFREIYPKYLVRG+GGCEKGN A V ALARSIE+ DLVQTL G QSVSVYTKDLLDRML++DSR ADIFPRYNSHPF+GEGEQL ERLGFLHQDS+RGVF+ IASK+S+ FC DIYSGLKIEFKTIEVFKEYCTTKTFM FKRRDE EWRQFI+DTRKICCILHAWSRK D D+FV+E+GC DRY+CRIL EL
Sbjct:   81 AWEPTLSPTLENFERRPGVYKTLLRKVDNWATLSGSKKLLSVKKLIRIRVSDKMKKVREKPNALGVFDHAADMATIHGNTNPKSTINSLHLLGKYPDQDPRFYIHMVYRYYMNEYHNQLATEDKVLRFPSFQKILDTTKPIDCIGAIPAEFRTFVRGIRGNSVSTVTTPVPSKTNANEVVYTHNFEATVPWVPVMRAMIYDLFVNLNTRFREIYPKYLVRGEGGCEKGNVAAVEALARSIEMADLVQTLTGVQSVSVYTKDLLDRMLAVDSRAADIFPRYNSHPFVGEGEQLRERLGFLHQDSVRGVFQRIASKSSSDFCTDIYSGLKIEFKTIEVFKEYCTTKTFMVFKRRDECEWRQFILDTRKICCILHAWSRKKDVDEFVEEYGCEDRYMCRILAEL 481          
BLAST of mRNA_Ecto-sp13_S_contig11988.1691.1 vs. uniprot
Match: B5LWD1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWD1_9PHYC)

HSP 1 Score: 123 bits (309), Expect = 6.340e-28
Identity = 101/358 (28.21%), Postives = 158/358 (44.13%), Query Frame = 1
Query:   94 TLNGSKKLSSVKKVIRIRVSDKMQKTCGKPNALGVFDNSADMATIYGDTDHKSIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKLLANEDKVLRFPSIQKILDVTKPIDCIGAIPAEFRAFVKSSKGNSVSTATIPVPSKTSANEVVYTYNFEAAVPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRGDGGCEKGNKAVVAALARSIEIKDLVQTLQGFQSVSVYTKDLLDRMLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFRHIASKTSNFCNDIYSGLKIEFKTIEVFKEYCTTKTFMSFKRRDEGEWRQFIVDTRKICCILHAWSRK----SDADKFVKE 1155
            T +G KKLS  +  +R+R     + T     +L     + D   +   +D  + I  LH  G     D R+Y+HMV+R+Y+ E+H        VL  PS Q ILD   P       P EFR F++    N   +  +P+P K SA EV Y  NFE     +   RA I  +    +   R +YP+YL  G    +   + V  A AR ++     +   G + +S      LD+++S     A     Y  H F+  GEQL ER GF  ++S   +F   A K       ++S    +    + FK +CT K  +S    DE   R+ ++    +  +L  ++R+    +DA   ++E
Sbjct:   52 TASGLKKLSDARITLRLRQECAERST----PSLETEALARDELDLTNSSDIDTFIKVLHSWGNCVIHDSRYYLHMVFRFYLKEYHDTARKLGLVLEHPSYQFILDSIYPSTSASKFPPEFRRFLRD---NPPRSPRVPLPLKRSATEVTYAENFEDRSE-ISTARASIQRIMHKWSSERRCVYPEYLRPGSSKSDFIVERV--AYARKVD-----EVSSGMKKLSAVCTIKLDKVVSQCPISATAHEEYMKHVFVQSGEQLKERFGFFSRESYHEIF--FAVKDHGIHEKLFSATSFDVGGYDNFKAFCTRKGRLS---NDEASVRKLLMTVVDVVFLLGCYNRRRLARADAGSIIRE 389          
BLAST of mRNA_Ecto-sp13_S_contig11988.1691.1 vs. uniprot
Match: Q6XM02_9PHYC (FirrV-1-B34 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM02_9PHYC)

HSP 1 Score: 117 bits (292), Expect = 2.000e-25
Identity = 103/384 (26.82%), Postives = 169/384 (44.01%), Query Frame = 1
Query:   25 AFDNFARRPGVYKTLLKKIDNWATLNGSKKLSSVKKVIRIRVSDKMQKTCGKPNALGVFDNSADMATIYGDTDHKSIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKLLANEDKVLRFPSIQKILDVTKPIDCIGAIPAEFRAFVKSSKGNSVSTATIPVPSKTSANEVVYTYNFEAAVPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRGDGGCEKGNKAVVAALARSIEIKDLVQTLQGFQSVSVYTKDLLDRMLSIDSRVADIFPRY--NSHPFLGEGEQLH--------------ERLGFLHQDSIRGVFRHIASKTSNFCNDIYSGLKIEFKTIEVFKEYCTTKTFMSFKRRDEGEWRQFIVDTRKICCILHAWSRK 1128
            AF++     G +      +++  T  G KKL  +K  IR+RV+  M++   K     +   +  +     D D  + +  L      PE DP++Y+HMV+R+YM ++H  L N+ +V+ +PS Q ILD+  P D   A P EFRAF+K +   S+ T   P+P K  A +V   YNFEA +P V   R  I  +F          YP YL  G  GC       +       +IK + + ++   +    T   LD ++     V +++  Y  NS  F  E +Q                + LG +H D    + RH+  +     N + S   +    ++ F++YCT K  + +     G    F+  T+ +  +L  +  K
Sbjct:   38 AFESDLVNGGGFLECTAALEDRLTPRGLKKLLDLKISIRLRVAQDMRE---KQRTEAIPAMTQPLEFPLDDADGFTTV--LQKWATMPEDDPKYYLHMVFRFYMKDYHDFLVNKGQVIFYPSYQTILDILYPSDAAIAFPPEFRAFMKDAHSRSLETPYTPLPVKGDAKKVSLQYNFEA-LPDVATQRRYIERVFDIWKQTSFCTYPTYLCTGKPGCGYVENQFIYFR----KIKRVKKEMEKLVNFPRETLAKLDTLVCKYPLVHEVYLDYAKNSSQFSSERKQFRRIMLQKFRKHFVMCKELG-IHSD----LARHVVER-----NSLLSAAPVLDHALQDFEKYCTKKIRVYYSESSVGT---FLALTQGVLSLLECYGLK 398          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11988.1691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNK3_ESV1K1.940e-26989.80EsV-1-70 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPA2_ECTSI4.030e-24181.55EsV-1-70 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
B5LWD1_9PHYC6.340e-2828.21Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM02_9PHYC2.000e-2526.82FirrV-1-B34 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11988contigEcto-sp13_S_contig11988:8..1213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1206
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-70
Ec32 orthologEc-06_006100.1
Cds size1206
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462635.3825555-CDS-Ecto-sp13_S_contig11988:7..12131681462635.3825555-CDS-Ecto-sp13_S_contig11988:7..1213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11988 8..1213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11988.1691.1prot_Ecto-sp13_S_contig11988.1691.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11988 8..1213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11988.1691.1

>prot_Ecto-sp13_S_contig11988.1691.1 ID=prot_Ecto-sp13_S_contig11988.1691.1|Name=mRNA_Ecto-sp13_S_contig11988.1691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=402bp
AWELTPSPAFDNFARRPGVYKTLLKKIDNWATLNGSKKLSSVKKVIRIRV
SDKMQKTCGKPNALGVFDNSADMATIYGDTDHKSIIHSLHLLGKYPEKDP
RFYIHMVYRYYMNEFHKLLANEDKVLRFPSIQKILDVTKPIDCIGAIPAE
FRAFVKSSKGNSVSTATIPVPSKTSANEVVYTYNFEAAVPWVPVMRAMIF
DLFVNLNPRFREIYPKYLVRGDGGCEKGNKAVVAALARSIEIKDLVQTLQ
GFQSVSVYTKDLLDRMLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLH
QDSIRGVFRHIASKTSNFCNDIYSGLKIEFKTIEVFKEYCTTKTFMSFKR
RDEGEWRQFIVDTRKICCILHAWSRKSDADKFVKEHGCGDRYLCRILEEL
V*
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mRNA from alignment at Ecto-sp13_S_contig11988:8..1213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11988.1691.1 ID=mRNA_Ecto-sp13_S_contig11988.1691.1|Name=mRNA_Ecto-sp13_S_contig11988.1691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11988:8..1213+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATGGGAGCTGACACCATCCCCGGCCTTTGACAACTTTGCAAGGAGACC GGGCGTTTACAAAACGTTGTTGAAGAAAATAGACAACTGGGCCACGTTGA ATGGGAGCAAGAAGCTCTCGTCCGTCAAAAAAGTCATTCGCATCAGGGTC AGCGACAAGATGCAGAAAACATGTGGAAAACCGAACGCACTGGGAGTCTT TGACAACTCCGCTGACATGGCGACCATCTACGGAGACACCGACCACAAGA GCATTATCCACAGCCTCCATCTTCTCGGCAAGTACCCGGAGAAAGATCCT CGATTCTACATTCACATGGTGTACCGGTACTACATGAACGAGTTTCACAA GCTGCTCGCCAACGAAGACAAGGTGCTGCGATTTCCGAGCATCCAAAAAA TTCTGGACGTCACGAAACCGATCGATTGTATCGGAGCAATACCAGCGGAG TTCCGAGCGTTCGTCAAAAGCAGCAAAGGAAACTCCGTGTCCACTGCTAC CATACCCGTCCCTTCGAAGACAAGCGCGAACGAGGTGGTGTACACGTACA ACTTCGAGGCCGCCGTACCGTGGGTGCCGGTCATGAGGGCTATGATCTTC GATCTGTTCGTCAATCTCAACCCCCGGTTCAGAGAAATCTATCCCAAGTA CCTTGTCAGAGGCGACGGTGGCTGTGAAAAGGGAAACAAGGCCGTCGTCG CGGCGCTCGCGCGATCGATAGAGATAAAAGATCTCGTGCAGACGCTTCAA GGGTTTCAGTCCGTCTCTGTCTACACCAAGGACCTCCTGGACCGAATGCT GTCGATCGACTCTCGTGTGGCCGACATCTTCCCCAGGTACAACAGCCACC CATTTCTAGGCGAAGGCGAACAGCTGCACGAGCGTCTCGGGTTCTTGCAC CAGGACTCAATCCGAGGAGTGTTTCGGCACATCGCGTCCAAGACGTCTAA TTTCTGCAACGACATCTACTCTGGACTGAAAATCGAGTTTAAGACCATTG AAGTCTTCAAAGAATACTGCACCACCAAAACCTTCATGTCGTTCAAGAGG AGGGACGAGGGAGAGTGGAGACAATTCATTGTCGACACGAGAAAGATTTG TTGCATCTTGCATGCCTGGAGCCGGAAGAGCGACGCCGACAAGTTCGTGA AAGAACACGGGTGTGGAGATCGATACCTGTGCCGTATTTTGGAAGAGCTT GTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11988:8..1213+

>mRNA_Ecto-sp13_S_contig11988.1691.1 ID=mRNA_Ecto-sp13_S_contig11988.1691.1|Name=mRNA_Ecto-sp13_S_contig11988.1691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11988:8..1213+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATGGGAGCTGACACCATCCCCGGCCTTTGACAACTTTGCAAGGAGACC
GGGCGTTTACAAAACGTTGTTGAAGAAAATAGACAACTGGGCCACGTTGA
ATGGGAGCAAGAAGCTCTCGTCCGTCAAAAAAGTCATTCGCATCAGGGTC
AGCGACAAGATGCAGAAAACATGTGGAAAACCGAACGCACTGGGAGTCTT
TGACAACTCCGCTGACATGGCGACCATCTACGGAGACACCGACCACAAGA
GCATTATCCACAGCCTCCATCTTCTCGGCAAGTACCCGGAGAAAGATCCT
CGATTCTACATTCACATGGTGTACCGGTACTACATGAACGAGTTTCACAA
GCTGCTCGCCAACGAAGACAAGGTGCTGCGATTTCCGAGCATCCAAAAAA
TTCTGGACGTCACGAAACCGATCGATTGTATCGGAGCAATACCAGCGGAG
TTCCGAGCGTTCGTCAAAAGCAGCAAAGGAAACTCCGTGTCCACTGCTAC
CATACCCGTCCCTTCGAAGACAAGCGCGAACGAGGTGGTGTACACGTACA
ACTTCGAGGCCGCCGTACCGTGGGTGCCGGTCATGAGGGCTATGATCTTC
GATCTGTTCGTCAATCTCAACCCCCGGTTCAGAGAAATCTATCCCAAGTA
CCTTGTCAGAGGCGACGGTGGCTGTGAAAAGGGAAACAAGGCCGTCGTCG
CGGCGCTCGCGCGATCGATAGAGATAAAAGATCTCGTGCAGACGCTTCAA
GGGTTTCAGTCCGTCTCTGTCTACACCAAGGACCTCCTGGACCGAATGCT
GTCGATCGACTCTCGTGTGGCCGACATCTTCCCCAGGTACAACAGCCACC
CATTTCTAGGCGAAGGCGAACAGCTGCACGAGCGTCTCGGGTTCTTGCAC
CAGGACTCAATCCGAGGAGTGTTTCGGCACATCGCGTCCAAGACGTCTAA
TTTCTGCAACGACATCTACTCTGGACTGAAAATCGAGTTTAAGACCATTG
AAGTCTTCAAAGAATACTGCACCACCAAAACCTTCATGTCGTTCAAGAGG
AGGGACGAGGGAGAGTGGAGACAATTCATTGTCGACACGAGAAAGATTTG
TTGCATCTTGCATGCCTGGAGCCGGAAGAGCGACGCCGACAAGTTCGTGA
AAGAACACGGGTGTGGAGATCGATACCTGTGCCGTATTTTGGAAGAGCTT
GTGTAA
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