mRNA_Ecto-sp13_S_contig11988.1691.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11988.1691.1 vs. uniprot
Match: Q8QNK3_ESV1K (EsV-1-70 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNK3_ESV1K) HSP 1 Score: 745 bits (1923), Expect = 1.940e-269 Identity = 361/402 (89.80%), Postives = 385/402 (95.77%), Query Frame = 1
Query: 1 AWELTPSPAFDNFARRPGVYKTLLKKIDNWATLNGSKKLSSVKKVIRIRVSDKMQKTCGKPNALGVFDNSADMATIYGDTDHKSIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKLLANEDKVLRFPSIQKILDVTKPIDCIGAIPAEFRAFVKSSKGNSVSTATIPVPSKTSANEVVYTYNFEAAVPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRGDGGCEKGNKAVVAALARSIEIKDLVQTLQGFQSVSVYTKDLLDRMLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFRHIASKTSN-FCNDIYSGLKIEFKTIEVFKEYCTTKTFMSFKRRDEGEWRQFIVDTRKICCILHAWSRKSDADKFVKEHGCGDRYLCRILEELV 1203
AWE TPSP FDNFARRPGVYKTLLKKIDNWATLNG KKLSSVKK+IR+RVSDKM+ KPNALGVFDN+ADMATIYGDTDH+SIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHK LANED+VLRFPS+QKILD+TKPIDCIGAIPAEFR FVKSS+GNSVST TIPVPSKT+AN+VVYT+NFE +VPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRG+GGCEKGNKAVVAALARSIE+KDLVQTLQG QS+SVYTKDLLD+MLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFR IASKTS+ FC +IYSGL+IEFKTIEVF+EYCTTKTFM+FKRRDEGEWRQFIVDTRKICCILHAWSRK DAD+FVKE+GCGDRYLCRIL ELV
Sbjct: 81 AWEPTPSPTFDNFARRPGVYKTLLKKIDNWATLNGGKKLSSVKKLIRVRVSDKMKTMREKPNALGVFDNAADMATIYGDTDHESIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKQLANEDRVLRFPSMQKILDITKPIDCIGAIPAEFRTFVKSSRGNSVSTVTIPVPSKTNANDVVYTHNFEVSVPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRGEGGCEKGNKAVVAALARSIEMKDLVQTLQGTQSISVYTKDLLDQMLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFRRIASKTSSEFCTEIYSGLRIEFKTIEVFREYCTTKTFMAFKRRDEGEWRQFIVDTRKICCILHAWSRKRDADEFVKEYGCGDRYLCRILGELV 482
BLAST of mRNA_Ecto-sp13_S_contig11988.1691.1 vs. uniprot
Match: D8LPA2_ECTSI (EsV-1-70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA2_ECTSI) HSP 1 Score: 673 bits (1737), Expect = 4.030e-241 Identity = 327/401 (81.55%), Postives = 361/401 (90.02%), Query Frame = 1
Query: 1 AWELTPSPAFDNFARRPGVYKTLLKKIDNWATLNGSKKLSSVKKVIRIRVSDKMQKTCGKPNALGVFDNSADMATIYGDTDHKSIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKLLANEDKVLRFPSIQKILDVTKPIDCIGAIPAEFRAFVKSSKGNSVSTATIPVPSKTSANEVVYTYNFEAAVPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRGDGGCEKGNKAVVAALARSIEIKDLVQTLQGFQSVSVYTKDLLDRMLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFRHIASKTSN-FCNDIYSGLKIEFKTIEVFKEYCTTKTFMSFKRRDEGEWRQFIVDTRKICCILHAWSRKSDADKFVKEHGCGDRYLCRILEEL 1200
AWE T SP +NF RRPGVYKTLL+K+DNWATL+GSKKL SVKK+IRIRVSDKM+K KPNALGVFD++ADMATI+G+T+ KS I+SLHLLGKYP++DPRFYIHMVYRYYMNE+H LA EDKVLRFPS QKILD TKPIDCIGAIPAEFR FV+ +GNSVST T PVPSKT+ANEVVYT+NFEA VPWVPVMRAMI+DLFVNLN RFREIYPKYLVRG+GGCEKGN A V ALARSIE+ DLVQTL G QSVSVYTKDLLDRML++DSR ADIFPRYNSHPF+GEGEQL ERLGFLHQDS+RGVF+ IASK+S+ FC DIYSGLKIEFKTIEVFKEYCTTKTFM FKRRDE EWRQFI+DTRKICCILHAWSRK D D+FV+E+GC DRY+CRIL EL
Sbjct: 81 AWEPTLSPTLENFERRPGVYKTLLRKVDNWATLSGSKKLLSVKKLIRIRVSDKMKKVREKPNALGVFDHAADMATIHGNTNPKSTINSLHLLGKYPDQDPRFYIHMVYRYYMNEYHNQLATEDKVLRFPSFQKILDTTKPIDCIGAIPAEFRTFVRGIRGNSVSTVTTPVPSKTNANEVVYTHNFEATVPWVPVMRAMIYDLFVNLNTRFREIYPKYLVRGEGGCEKGNVAAVEALARSIEMADLVQTLTGVQSVSVYTKDLLDRMLAVDSRAADIFPRYNSHPFVGEGEQLRERLGFLHQDSVRGVFQRIASKSSSDFCTDIYSGLKIEFKTIEVFKEYCTTKTFMVFKRRDECEWRQFILDTRKICCILHAWSRKKDVDEFVEEYGCEDRYMCRILAEL 481
BLAST of mRNA_Ecto-sp13_S_contig11988.1691.1 vs. uniprot
Match: B5LWD1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWD1_9PHYC) HSP 1 Score: 123 bits (309), Expect = 6.340e-28 Identity = 101/358 (28.21%), Postives = 158/358 (44.13%), Query Frame = 1
Query: 94 TLNGSKKLSSVKKVIRIRVSDKMQKTCGKPNALGVFDNSADMATIYGDTDHKSIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKLLANEDKVLRFPSIQKILDVTKPIDCIGAIPAEFRAFVKSSKGNSVSTATIPVPSKTSANEVVYTYNFEAAVPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRGDGGCEKGNKAVVAALARSIEIKDLVQTLQGFQSVSVYTKDLLDRMLSIDSRVADIFPRYNSHPFLGEGEQLHERLGFLHQDSIRGVFRHIASKTSNFCNDIYSGLKIEFKTIEVFKEYCTTKTFMSFKRRDEGEWRQFIVDTRKICCILHAWSRK----SDADKFVKE 1155
T +G KKLS + +R+R + T +L + D + +D + I LH G D R+Y+HMV+R+Y+ E+H VL PS Q ILD P P EFR F++ N + +P+P K SA EV Y NFE + RA I + + R +YP+YL G + + V A AR ++ + G + +S LD+++S A Y H F+ GEQL ER GF ++S +F A K ++S + + FK +CT K +S DE R+ ++ + +L ++R+ +DA ++E
Sbjct: 52 TASGLKKLSDARITLRLRQECAERST----PSLETEALARDELDLTNSSDIDTFIKVLHSWGNCVIHDSRYYLHMVFRFYLKEYHDTARKLGLVLEHPSYQFILDSIYPSTSASKFPPEFRRFLRD---NPPRSPRVPLPLKRSATEVTYAENFEDRSE-ISTARASIQRIMHKWSSERRCVYPEYLRPGSSKSDFIVERV--AYARKVD-----EVSSGMKKLSAVCTIKLDKVVSQCPISATAHEEYMKHVFVQSGEQLKERFGFFSRESYHEIF--FAVKDHGIHEKLFSATSFDVGGYDNFKAFCTRKGRLS---NDEASVRKLLMTVVDVVFLLGCYNRRRLARADAGSIIRE 389
BLAST of mRNA_Ecto-sp13_S_contig11988.1691.1 vs. uniprot
Match: Q6XM02_9PHYC (FirrV-1-B34 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM02_9PHYC) HSP 1 Score: 117 bits (292), Expect = 2.000e-25 Identity = 103/384 (26.82%), Postives = 169/384 (44.01%), Query Frame = 1
Query: 25 AFDNFARRPGVYKTLLKKIDNWATLNGSKKLSSVKKVIRIRVSDKMQKTCGKPNALGVFDNSADMATIYGDTDHKSIIHSLHLLGKYPEKDPRFYIHMVYRYYMNEFHKLLANEDKVLRFPSIQKILDVTKPIDCIGAIPAEFRAFVKSSKGNSVSTATIPVPSKTSANEVVYTYNFEAAVPWVPVMRAMIFDLFVNLNPRFREIYPKYLVRGDGGCEKGNKAVVAALARSIEIKDLVQTLQGFQSVSVYTKDLLDRMLSIDSRVADIFPRY--NSHPFLGEGEQLH--------------ERLGFLHQDSIRGVFRHIASKTSNFCNDIYSGLKIEFKTIEVFKEYCTTKTFMSFKRRDEGEWRQFIVDTRKICCILHAWSRK 1128
AF++ G + +++ T G KKL +K IR+RV+ M++ K + + + D D + + L PE DP++Y+HMV+R+YM ++H L N+ +V+ +PS Q ILD+ P D A P EFRAF+K + S+ T P+P K A +V YNFEA +P V R I +F YP YL G GC + +IK + + ++ + T LD ++ V +++ Y NS F E +Q + LG +H D + RH+ + N + S + ++ F++YCT K + + G F+ T+ + +L + K
Sbjct: 38 AFESDLVNGGGFLECTAALEDRLTPRGLKKLLDLKISIRLRVAQDMRE---KQRTEAIPAMTQPLEFPLDDADGFTTV--LQKWATMPEDDPKYYLHMVFRFYMKDYHDFLVNKGQVIFYPSYQTILDILYPSDAAIAFPPEFRAFMKDAHSRSLETPYTPLPVKGDAKKVSLQYNFEA-LPDVATQRRYIERVFDIWKQTSFCTYPTYLCTGKPGCGYVENQFIYFR----KIKRVKKEMEKLVNFPRETLAKLDTLVCKYPLVHEVYLDYAKNSSQFSSERKQFRRIMLQKFRKHFVMCKELG-IHSD----LARHVVER-----NSLLSAAPVLDHALQDFEKYCTKKIRVYYSESSVGT---FLALTQGVLSLLECYGLK 398 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11988.1691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11988.1691.1 >prot_Ecto-sp13_S_contig11988.1691.1 ID=prot_Ecto-sp13_S_contig11988.1691.1|Name=mRNA_Ecto-sp13_S_contig11988.1691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=402bp AWELTPSPAFDNFARRPGVYKTLLKKIDNWATLNGSKKLSSVKKVIRIRVback to top mRNA from alignment at Ecto-sp13_S_contig11988:8..1213+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11988.1691.1 ID=mRNA_Ecto-sp13_S_contig11988.1691.1|Name=mRNA_Ecto-sp13_S_contig11988.1691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11988:8..1213+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11988:8..1213+ >mRNA_Ecto-sp13_S_contig11988.1691.1 ID=mRNA_Ecto-sp13_S_contig11988.1691.1|Name=mRNA_Ecto-sp13_S_contig11988.1691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11988:8..1213+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |