mRNA_Ecto-sp13_S_contig11979.1686.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: D8LRH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH3_ECTSI) HSP 1 Score: 829 bits (2141), Expect = 1.450e-282 Identity = 620/774 (80.10%), Postives = 633/774 (81.78%), Query Frame = 1
Query: 793 MAATSAWGLGTHKMTADLSASTPVANSSSESPIKAKSFGMVEGATTAPSASNGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADRVPASAGEVGAAGQGEXXXXXXXXXXXXXXXXXXXXXXXXXXXX--STVSKPSTPAAVGREAXXXXXXXXX-EGPKEALSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELVKEAVAKEELAAKEG----------SAKWKEKATTAESNAXXXXXXALNRNGPVESXXGHSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAPXXXXXXXXXXXXXXXXXXXXXXXRQEVDDHAARASDAATXXXXXXXXXXXRSSPTPRPARASPPFKSPVPSQQQLLPKAEERGTGAXXXXXXXXXXXESVAGAGRSGGGSAGRHYTPVMVFRAPQGRSFPQKCSEADVERALSAARFVPDRSSPAWGGGAPPLPPPLPLPTGSMPCMVGLFKVDETTGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYRAYQKVAKAHHRRASSTAGAGATPGKRPGGGGXXXXXGLHGPNRGKHFSPAAVGGSGFANGGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYK 3075
MAATSAWGLGTHKMTADLSASTPVANSS+ESP+KAKSFGMVEGATTAPSASNGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXX GADRVPASAGEV AAGQGE XXXXXXXXXXXXXXXXX STVSKPSTP AV EA XXXXXXX EGPKEALST XXXXX V+ + AKEELA +EG AK KEKATTAES+A A+N NGPVES GHSP XXXXXXXXXXXXXXXXX XXXXXX XXXXXXXXXXXXXXXXXXXXRQEVD+HAARASDAA XXXXXXXXXXX PTPRPARASPP KSPVPSQQQLLPKAEERGT AXXXXXXXXXXX SGGGSAGRH TP+MVFRAPQGRS PQKCSEADVERALSAA FVPDRSSPAWGGG PPLPPPLPLPTGSMPCMVG FKVDE TGVHRCAGNWAMNKADLQAADKNRASPFEFRMVE GGAG G VRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEG WNVEGQGNNVYGAFTITGRLSANRELEVYRAY+KVAKA HRRASSTAGAGA XX GLHGPNRGKHFSPAAVGG+GF++GGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYK
Sbjct: 1 MAATSAWGLGTHKMTADLSASTPVANSSTESPLKAKSFGMVEGATTAPSASNGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASN----GADRVPASAGEVDAAGQGEEEASEVAAXXXXXXXXXXXXXXXXXQGRGGSTVSKPSTPVAVEGEAEGXXXXXXXXEGPKEALSTEEAGGEKPAAEATVKDKEPXXXXXGESKREEPEVE--------VEGSEAKEELAKEEGXXXXXXXXXGGAKSKEKATTAESSATKETTAAVNGNGPVESNGGHSPAAXXXXXXXXXXXXXXXXXVASPXXXXXXX------XXXXXXXXXXXXXXXXXXXXRQEVDEHAARASDAAXXXXXXXXXXXXXXXPTPRPARASPPSKSPVPSQQQLLPKAEERGTAAXXXXXXXXXXXXXXXXX-XSGGGSAGRHSTPLMVFRAPQGRSLPQKCSEADVERALSAAHFVPDRSSPAWGGGGPPLPPPLPLPTGSMPCMVGFFKVDEKTGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEGGGAGTGVVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFTITGRLSANRELEVYRAYRKVAKAQHRRASSTAGAGAXXXXXXXXXXXXSTPGLHGPNRGKHFSPAAVGGTGFSDGGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYK 755
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A836CDK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK9_9STRA) HSP 1 Score: 163 bits (412), Expect = 8.490e-38 Identity = 130/343 (37.90%), Postives = 161/343 (46.94%), Query Frame = 1
Query: 2185 PPPLPLPTGS--MPCMVGLFKVDETTGVHRCAGNWAMN-KADLQAADKNRASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYRAY---------QKVAKAH---HRRASS-----TAGAGATPGKRPGGGGXXXXXGLHGPNRGKHFSPAAVGGSGF----ANG--------------GGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSK---------LESGEY 3072
P P PT + +PCM G+ V+ TG H G W M+ KA L + SPFEFR GA G P +G+Y HF+VR P KP KV E + + F NS G WNVEG G N +G F + G L R+LE+++ Y QK K RRA++ A A AT K P L P G S F +NG GG AK AP RR+SR PS L +D G L GLR+CV +L + ++ S WF +PVD V LNLP Y TI+KRPMDLGTVK+K LE+GEY
Sbjct: 72 PSPFEEPTANVPLPCMRGVLAVEANTGDHVVTGWWGMSSKAHLPGGET---SPFEFRR----GARPGGEEVPASGEYAAHFMVRMPGKPADKVHENGMQLTFTVNSGGGWNVEGSGTNKFGPFNLLGTLDGQRQLELFKIYTIRAAAPSTQKTGKRPTPVKRRAATGISPPVATADATSTKAPM---------LPPPGVGXXXXXVRRASSFFDDSTSNGATQVPDEAQFEAPPGGDAKVAAGVGPDGAPLRRRISRLPSHLQDDRGQ---VRLPEGLRKCVNLLKQISTVKNLSHWFRDPVDPVALNLPTYLTIVKRPMDLGTVKAKRLSRIGSTHLEAGEY 395
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A6U4KPS7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KPS7_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.580e-26 Identity = 111/324 (34.26%), Postives = 152/324 (46.91%), Query Frame = 1
Query: 2185 PPPLPLPTGSMPCMVGLFKVDETTGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQP-PKPVSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYRAY----------QKVAKAHHRRASS----------TAG----AGATP-GKRPGGGGXXXXXGLHGPNRGKHFSPAAVGGSGFANGGGSAKAGDSGSETPAPPSR--RVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 3072
PPP P ++PCM G D +GVH CAG W M K S FE+R A P G Y G F+++QP PKP KV+EKD+ + FVKNS G NV G+G N +G FT++G L+A+ LE+YR Y K A +++ S T G GATP +R G P K + AA G+ GG+ KA +E +R R+ +TPS L+ + + +++ ++ L S WF VD + L +P+Y IIK+PMDLGTVK KL + EY
Sbjct: 151 PPPTAPPAFALPCMKGAMMSDPVSGVHVCAGMWGMTKE--AHGIPGHTSAFEYRHTPA----NQPQAVPSAGPYTGFFMLKQPAPKPPLKVDEKDVVLRFVKNSAGGHNVAGEGANRFGKFTVSGVLAADGNLEIYRMYVVNKGAGAAQAKTPAARKKKSLSVKAPETAPPATGGEGPAGGATPRSQRQNRGSWKDIAKASAPEPAKPKAKAARKGAVAKAKGGAKKALKQEAEPVLHANRTGRLRKTPSHLMELPEQEKRPRNSEEMKKAGVLMTALMK-DANSFWFAIAVDPIALKIPDYFDIIKKPMDLGTVKKKLTAHEY 467
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A7S2L0T7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L0T7_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.740e-14 Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 1
Query: 2185 PPPLPL-PTGSMPCMVGLFKVDETTGV-------HRCAGNWAMNKADLQAADKN---RASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQPPKPV-SKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYRAYQKV 2607
PPP L PTG + C+ G + + G+ H+ G WAM + A +N S FE+ +GG FP +GKY G FLV P +K+EEK++ + F +N+EG NVEG+G+NV+G ++ITG LS E+ ++R YQ V
Sbjct: 179 PPPTKLIPTGVV-CLRGKLVRNTSEGISLDKYCIHKITGMWAMGLDKILADPENSKGECSNFEYEHKASGGV----TAFPLSGKYNGSFLVNAPHGGAKTKIEEKNVMLKFRENTEGYHNVEGKGSNVWGKYSITGTLSKEGEITLFRHYQAV 326
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A7S2VH74_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VH74_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.340e-12 Identity = 91/310 (29.35%), Postives = 132/310 (42.58%), Query Frame = 1
Query: 2230 GLFKVDETTGVHRCAGNWAMNKADLQAADKNRASPFEFRM-----VEAGGAGKGAVRFP-HTGKYQGHF-LVRQPPKPVS--KVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANR----ELEVYRAYQKVA----------KAHHRRASSTAGAGATPGKRPGGGGXXXXXGLHGPNRGKHFSPAAVGGSGFANGGGSAKAGDSGSETPAPP--------SRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIR-GKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLES 3063
G +VD+ G H CAG WA+ + L + SPF R+ +A G+ +FP + Y+G F L +Q V K+ +K + + F NS+G +NV G+G N G FT+ G L AN ++E+YR Y +A A S+A AGA GK P P PP S R+ + PSKL +D D T L + +C +L +R + +F+EPVD V L +P Y IIK PMDL T+ S++++
Sbjct: 577 GTLRVDKD-GSHSCAGKWAVTRDHLTT--EGLTSPFAVRLDTLHAQDAAGSDSTGGQFPLDSAMYKGSFQLKKQGVGRVHSHKIVDKQVVMKFRMNSQGFYNVYGKGVNEIGTFTLIGTLIANSKTAGQVELYRTYPSDLLNKSSPPGGKQAPSSSAISSANAGAA-------------------EDGKFTKPLL----------------------PGPPPVGVTRRESSRLVKLPSKLEDD---DPTAQLARAMEKCSQLLRVMRESDITQGGFFSEPVDPVKLGIPTYFQIIKEPMDLKTIASRMDN 839
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A7S2ANP6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANP6_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.940e-11 Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 2830 RVSRTPSKLIN--DIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGE 3069
R+ R PS L + D+G DG L +R+C+ V+ +R+ + + WFN+PVD + L +PEY+ ++K PMDLGTVK+ +ESG+
Sbjct: 554 RMRRIPSYLQDNDDLGTDGKVRLNEHMRKCLQVIRYMRS-QPNAHWFNDPVDPIALGIPEYSNVVKNPMDLGTVKNNIESGK 634
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A7S4N176_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N176_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.790e-10 Identity = 82/315 (26.03%), Postives = 132/315 (41.90%), Query Frame = 1
Query: 2230 GLFKVDETTGVHRCAGNWAMNKAD------------LQAADKNRASPFEFRMV------EAGGAGKGAVRFP-HTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRL------SANRELEVYRAYQKVAKAHHRRASSTAGAGATPGKRPGGGGXXXXXGLHGPNRGKHFSPAAVGGSGFANGGGSAKAGDSGSETPAPP---------SRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLR-AIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGE 3069
G+ ++++ G H C+G WA+ + L+A A+ + + A A G FP + +Y+G F +R+ + + + + F KN +G++NV G+G N G F + G L + + +E+YR Y ATP PGG +G H P + G + + S P PP S R S+ P++L +D T + + +C ++L L + +F EPVD V +P Y TII+ PMDLGT++SK+E GE
Sbjct: 658 GVLRINDD-GAHTCSGKWAITREHYNNGETANFHFGLEAHHAQFAAENMLKSIGKEVTNPAPPATLGTTTFPVDSARYKGSFKMRRGSTKYQSIVDTQIVLRFQKNEQGTYNVHGKGVNAIGTFNLIGTLILSTPGAMSGHVELYRMYVV----------------ATPAPPPGGKMLKKAVPTNGAAT--HDGPTPM------EGVTPTSSSPAPSSLPPPPQPASLVRRESSRQSKLPARLEDDDPKAKTARI---MEKCSSILKFLGDKDKQAGSFFAEPVDPVAHGIPTYHTIIRDPMDLGTLRSKMERGE 944
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: K0S4J9_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S4J9_THAOC) HSP 1 Score: 75.1 bits (183), Expect = 7.770e-10 Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 2257 GVHRCAGNWAMNKADLQAADKNR---ASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYRAY 2598
G H+ AG WA+ + A N A FE+ + A +G + FP +G Y G F + K EKD+ + +VKNS+G +NV+GQG+NVYG FT+ G L+ + + + R +
Sbjct: 1355 GTHKIAGTWALGLDTILADPDNSKGVALDFEYEHSPSPAAAEG-LDFPSSGSYSGWFHILGENGCKVKSPEKDVELKYVKNSQGGYNVQGQGSNVYGKFTVKGLLTQDGTITMCRQF 1470
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: UPI000E6F4E36 (transcription factor GTE3, chloroplastic-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F4E36) HSP 1 Score: 68.6 bits (166), Expect = 9.020e-10 Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 2905 RRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYK 3075
R+C +LNNL + F PVD V LNLP+Y T+IK+PMDLGTV+SK+ES +YK
Sbjct: 88 RKCNVILNNLIGYPYSKDTFGSPVDPVKLNLPDYYTLIKQPMDLGTVRSKMESDKYK 144
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: UPI00125E3864 (transcription factor GTE8-like n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00125E3864) HSP 1 Score: 70.5 bits (171), Expect = 1.340e-8 Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 2902 LRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 3072
L++C +L L +G EWFN+PVD V LN+P+Y TIIK+PMD GTVK KL SG Y
Sbjct: 166 LKKCEGLLRKLMTQKG-CEWFNQPVDVVKLNIPDYFTIIKQPMDFGTVKKKLTSGHY 221 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11979.1686.1 >prot_Ecto-sp13_S_contig11979.1686.1 ID=prot_Ecto-sp13_S_contig11979.1686.1|Name=mRNA_Ecto-sp13_S_contig11979.1686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=761bp MAATSAWGLGTHKMTADLSASTPVANSSSESPIKAKSFGMVEGATTAPSAback to top mRNA from alignment at Ecto-sp13_S_contig11979:363..4297- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11979.1686.1 ID=mRNA_Ecto-sp13_S_contig11979.1686.1|Name=mRNA_Ecto-sp13_S_contig11979.1686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3935bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11979:363..4297- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11979:363..4297- >mRNA_Ecto-sp13_S_contig11979.1686.1 ID=mRNA_Ecto-sp13_S_contig11979.1686.1|Name=mRNA_Ecto-sp13_S_contig11979.1686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2283bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11979:363..4297- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |