mRNA_Ecto-sp13_S_contig11979.1686.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11979.1686.1
Unique NamemRNA_Ecto-sp13_S_contig11979.1686.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: D8LRH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH3_ECTSI)

HSP 1 Score: 829 bits (2141), Expect = 1.450e-282
Identity = 620/774 (80.10%), Postives = 633/774 (81.78%), Query Frame = 1
Query:  793 MAATSAWGLGTHKMTADLSASTPVANSSSESPIKAKSFGMVEGATTAPSASNGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADRVPASAGEVGAAGQGEXXXXXXXXXXXXXXXXXXXXXXXXXXXX--STVSKPSTPAAVGREAXXXXXXXXX-EGPKEALSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELVKEAVAKEELAAKEG----------SAKWKEKATTAESNAXXXXXXALNRNGPVESXXGHSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAPXXXXXXXXXXXXXXXXXXXXXXXRQEVDDHAARASDAATXXXXXXXXXXXRSSPTPRPARASPPFKSPVPSQQQLLPKAEERGTGAXXXXXXXXXXXESVAGAGRSGGGSAGRHYTPVMVFRAPQGRSFPQKCSEADVERALSAARFVPDRSSPAWGGGAPPLPPPLPLPTGSMPCMVGLFKVDETTGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYRAYQKVAKAHHRRASSTAGAGATPGKRPGGGGXXXXXGLHGPNRGKHFSPAAVGGSGFANGGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYK 3075
            MAATSAWGLGTHKMTADLSASTPVANSS+ESP+KAKSFGMVEGATTAPSASNGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXX        GADRVPASAGEV AAGQGE        XXXXXXXXXXXXXXXXX     STVSKPSTP AV  EA  XXXXXXX EGPKEALST                   XXXXX                   V+ + AKEELA +EG           AK KEKATTAES+A      A+N NGPVES  GHSP  XXXXXXXXXXXXXXXXX    XXXXXX       XXXXXXXXXXXXXXXXXXXXRQEVD+HAARASDAA XXXXXXXXXXX   PTPRPARASPP KSPVPSQQQLLPKAEERGT AXXXXXXXXXXX        SGGGSAGRH TP+MVFRAPQGRS PQKCSEADVERALSAA FVPDRSSPAWGGG PPLPPPLPLPTGSMPCMVG FKVDE TGVHRCAGNWAMNKADLQAADKNRASPFEFRMVE GGAG G VRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEG WNVEGQGNNVYGAFTITGRLSANRELEVYRAY+KVAKA HRRASSTAGAGA          XX   GLHGPNRGKHFSPAAVGG+GF++GGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYK
Sbjct:    1 MAATSAWGLGTHKMTADLSASTPVANSSTESPLKAKSFGMVEGATTAPSASNGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASN----GADRVPASAGEVDAAGQGEEEASEVAAXXXXXXXXXXXXXXXXXQGRGGSTVSKPSTPVAVEGEAEGXXXXXXXXEGPKEALSTEEAGGEKPAAEATVKDKEPXXXXXGESKREEPEVE--------VEGSEAKEELAKEEGXXXXXXXXXGGAKSKEKATTAESSATKETTAAVNGNGPVESNGGHSPAAXXXXXXXXXXXXXXXXXVASPXXXXXXX------XXXXXXXXXXXXXXXXXXXXRQEVDEHAARASDAAXXXXXXXXXXXXXXXPTPRPARASPPSKSPVPSQQQLLPKAEERGTAAXXXXXXXXXXXXXXXXX-XSGGGSAGRHSTPLMVFRAPQGRSLPQKCSEADVERALSAAHFVPDRSSPAWGGGGPPLPPPLPLPTGSMPCMVGFFKVDEKTGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEGGGAGTGVVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFTITGRLSANRELEVYRAYRKVAKAQHRRASSTAGAGAXXXXXXXXXXXXSTPGLHGPNRGKHFSPAAVGGTGFSDGGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYK 755          
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A836CDK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK9_9STRA)

HSP 1 Score: 163 bits (412), Expect = 8.490e-38
Identity = 130/343 (37.90%), Postives = 161/343 (46.94%), Query Frame = 1
Query: 2185 PPPLPLPTGS--MPCMVGLFKVDETTGVHRCAGNWAMN-KADLQAADKNRASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYRAY---------QKVAKAH---HRRASS-----TAGAGATPGKRPGGGGXXXXXGLHGPNRGKHFSPAAVGGSGF----ANG--------------GGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSK---------LESGEY 3072
            P P   PT +  +PCM G+  V+  TG H   G W M+ KA L   +    SPFEFR     GA  G    P +G+Y  HF+VR P KP  KV E  + + F  NS G WNVEG G N +G F + G L   R+LE+++ Y         QK  K      RRA++      A A AT  K P          L  P  G          S F    +NG              GG AK         AP  RR+SR PS L +D G      L  GLR+CV +L  +  ++  S WF +PVD V LNLP Y TI+KRPMDLGTVK+K         LE+GEY
Sbjct:   72 PSPFEEPTANVPLPCMRGVLAVEANTGDHVVTGWWGMSSKAHLPGGET---SPFEFRR----GARPGGEEVPASGEYAAHFMVRMPGKPADKVHENGMQLTFTVNSGGGWNVEGSGTNKFGPFNLLGTLDGQRQLELFKIYTIRAAAPSTQKTGKRPTPVKRRAATGISPPVATADATSTKAPM---------LPPPGVGXXXXXVRRASSFFDDSTSNGATQVPDEAQFEAPPGGDAKVAAGVGPDGAPLRRRISRLPSHLQDDRGQ---VRLPEGLRKCVNLLKQISTVKNLSHWFRDPVDPVALNLPTYLTIVKRPMDLGTVKAKRLSRIGSTHLEAGEY 395          
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A6U4KPS7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KPS7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.580e-26
Identity = 111/324 (34.26%), Postives = 152/324 (46.91%), Query Frame = 1
Query: 2185 PPPLPLPTGSMPCMVGLFKVDETTGVHRCAGNWAMNKADLQAADKNRASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQP-PKPVSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYRAY----------QKVAKAHHRRASS----------TAG----AGATP-GKRPGGGGXXXXXGLHGPNRGKHFSPAAVGGSGFANGGGSAKAGDSGSETPAPPSR--RVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 3072
            PPP   P  ++PCM G    D  +GVH CAG W M K           S FE+R   A          P  G Y G F+++QP PKP  KV+EKD+ + FVKNS G  NV G+G N +G FT++G L+A+  LE+YR Y           K   A  +++ S          T G     GATP  +R   G          P   K  + AA  G+     GG+ KA    +E     +R  R+ +TPS L+     +     +  +++   ++  L      S WF   VD + L +P+Y  IIK+PMDLGTVK KL + EY
Sbjct:  151 PPPTAPPAFALPCMKGAMMSDPVSGVHVCAGMWGMTKE--AHGIPGHTSAFEYRHTPA----NQPQAVPSAGPYTGFFMLKQPAPKPPLKVDEKDVVLRFVKNSAGGHNVAGEGANRFGKFTVSGVLAADGNLEIYRMYVVNKGAGAAQAKTPAARKKKSLSVKAPETAPPATGGEGPAGGATPRSQRQNRGSWKDIAKASAPEPAKPKAKAARKGAVAKAKGGAKKALKQEAEPVLHANRTGRLRKTPSHLMELPEQEKRPRNSEEMKKAGVLMTALMK-DANSFWFAIAVDPIALKIPDYFDIIKKPMDLGTVKKKLTAHEY 467          
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A7S2L0T7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L0T7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.740e-14
Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 1
Query: 2185 PPPLPL-PTGSMPCMVGLFKVDETTGV-------HRCAGNWAMNKADLQAADKN---RASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQPPKPV-SKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYRAYQKV 2607
            PPP  L PTG + C+ G    + + G+       H+  G WAM    + A  +N     S FE+    +GG       FP +GKY G FLV  P     +K+EEK++ + F +N+EG  NVEG+G+NV+G ++ITG LS   E+ ++R YQ V
Sbjct:  179 PPPTKLIPTGVV-CLRGKLVRNTSEGISLDKYCIHKITGMWAMGLDKILADPENSKGECSNFEYEHKASGGV----TAFPLSGKYNGSFLVNAPHGGAKTKIEEKNVMLKFRENTEGYHNVEGKGSNVWGKYSITGTLSKEGEITLFRHYQAV 326          
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A7S2VH74_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VH74_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.340e-12
Identity = 91/310 (29.35%), Postives = 132/310 (42.58%), Query Frame = 1
Query: 2230 GLFKVDETTGVHRCAGNWAMNKADLQAADKNRASPFEFRM-----VEAGGAGKGAVRFP-HTGKYQGHF-LVRQPPKPVS--KVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANR----ELEVYRAYQKVA----------KAHHRRASSTAGAGATPGKRPGGGGXXXXXGLHGPNRGKHFSPAAVGGSGFANGGGSAKAGDSGSETPAPP--------SRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIR-GKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLES 3063
            G  +VD+  G H CAG WA+ +  L    +   SPF  R+      +A G+     +FP  +  Y+G F L +Q    V   K+ +K + + F  NS+G +NV G+G N  G FT+ G L AN     ++E+YR Y              +A    A S+A AGA                      GK   P                        P PP        S R+ + PSKL +D   D T  L   + +C  +L  +R     +  +F+EPVD V L +P Y  IIK PMDL T+ S++++
Sbjct:  577 GTLRVDKD-GSHSCAGKWAVTRDHLTT--EGLTSPFAVRLDTLHAQDAAGSDSTGGQFPLDSAMYKGSFQLKKQGVGRVHSHKIVDKQVVMKFRMNSQGFYNVYGKGVNEIGTFTLIGTLIANSKTAGQVELYRTYPSDLLNKSSPPGGKQAPSSSAISSANAGAA-------------------EDGKFTKPLL----------------------PGPPPVGVTRRESSRLVKLPSKLEDD---DPTAQLARAMEKCSQLLRVMRESDITQGGFFSEPVDPVKLGIPTYFQIIKEPMDLKTIASRMDN 839          
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A7S2ANP6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANP6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.940e-11
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 2830 RVSRTPSKLIN--DIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGE 3069
            R+ R PS L +  D+G DG   L   +R+C+ V+  +R+ +  + WFN+PVD + L +PEY+ ++K PMDLGTVK+ +ESG+
Sbjct:  554 RMRRIPSYLQDNDDLGTDGKVRLNEHMRKCLQVIRYMRS-QPNAHWFNDPVDPIALGIPEYSNVVKNPMDLGTVKNNIESGK 634          
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: A0A7S4N176_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N176_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.790e-10
Identity = 82/315 (26.03%), Postives = 132/315 (41.90%), Query Frame = 1
Query: 2230 GLFKVDETTGVHRCAGNWAMNKAD------------LQAADKNRASPFEFRMV------EAGGAGKGAVRFP-HTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRL------SANRELEVYRAYQKVAKAHHRRASSTAGAGATPGKRPGGGGXXXXXGLHGPNRGKHFSPAAVGGSGFANGGGSAKAGDSGSETPAPP---------SRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLR-AIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGE 3069
            G+ ++++  G H C+G WA+ +              L+A     A+    + +       A  A  G   FP  + +Y+G F +R+       + +  + + F KN +G++NV G+G N  G F + G L      + +  +E+YR Y                  ATP   PGG         +G     H  P  +       G     +  + S  P PP         S R S+ P++L +D     T  +   + +C ++L  L    +    +F EPVD V   +P Y TII+ PMDLGT++SK+E GE
Sbjct:  658 GVLRINDD-GAHTCSGKWAITREHYNNGETANFHFGLEAHHAQFAAENMLKSIGKEVTNPAPPATLGTTTFPVDSARYKGSFKMRRGSTKYQSIVDTQIVLRFQKNEQGTYNVHGKGVNAIGTFNLIGTLILSTPGAMSGHVELYRMYVV----------------ATPAPPPGGKMLKKAVPTNGAAT--HDGPTPM------EGVTPTSSSPAPSSLPPPPQPASLVRRESSRQSKLPARLEDDDPKAKTARI---MEKCSSILKFLGDKDKQAGSFFAEPVDPVAHGIPTYHTIIRDPMDLGTLRSKMERGE 944          
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: K0S4J9_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S4J9_THAOC)

HSP 1 Score: 75.1 bits (183), Expect = 7.770e-10
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 2257 GVHRCAGNWAMNKADLQAADKNR---ASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYRAY 2598
            G H+ AG WA+    + A   N    A  FE+    +  A +G + FP +G Y G F +        K  EKD+ + +VKNS+G +NV+GQG+NVYG FT+ G L+ +  + + R +
Sbjct: 1355 GTHKIAGTWALGLDTILADPDNSKGVALDFEYEHSPSPAAAEG-LDFPSSGSYSGWFHILGENGCKVKSPEKDVELKYVKNSQGGYNVQGQGSNVYGKFTVKGLLTQDGTITMCRQF 1470          
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: UPI000E6F4E36 (transcription factor GTE3, chloroplastic-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F4E36)

HSP 1 Score: 68.6 bits (166), Expect = 9.020e-10
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 2905 RRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYK 3075
            R+C  +LNNL       + F  PVD V LNLP+Y T+IK+PMDLGTV+SK+ES +YK
Sbjct:   88 RKCNVILNNLIGYPYSKDTFGSPVDPVKLNLPDYYTLIKQPMDLGTVRSKMESDKYK 144          
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Match: UPI00125E3864 (transcription factor GTE8-like n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00125E3864)

HSP 1 Score: 70.5 bits (171), Expect = 1.340e-8
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 2902 LRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 3072
            L++C  +L  L   +G  EWFN+PVD V LN+P+Y TIIK+PMD GTVK KL SG Y
Sbjct:  166 LKKCEGLLRKLMTQKG-CEWFNQPVDVVKLNIPDYFTIIKQPMDFGTVKKKLTSGHY 221          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11979.1686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH3_ECTSI1.450e-28280.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDK9_9STRA8.490e-3837.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U4KPS7_9STRA1.580e-2634.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2L0T7_9STRA2.740e-1437.91Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2VH74_9STRA1.340e-1229.35Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2ANP6_9STRA2.940e-1143.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4N176_9STRA1.790e-1026.03Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
K0S4J9_THAOC7.770e-1035.90Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
UPI000E6F4E369.020e-1056.14transcription factor GTE3, chloroplastic-like n=1 ... [more]
UPI00125E38641.340e-857.89transcription factor GTE8-like n=3 Tax=Ipomoea Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11979contigEcto-sp13_S_contig11979:363..4297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score844.3
Seed ortholog evalue4.3e-242
Seed eggNOG ortholog2880.D8LRH3
Model size3075
KEGG koko:K11684
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
Ec32 ortholog descriptionBromodomain and extraterminal protein
Ec32 orthologEc-18_004520.1
Cds size2283
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462635.0052211-CDS-Ecto-sp13_S_contig11979:362..25351681462635.0052211-CDS-Ecto-sp13_S_contig11979:362..2535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11979 363..2535 -
1681462635.0160134-CDS-Ecto-sp13_S_contig11979:3395..35051681462635.0160134-CDS-Ecto-sp13_S_contig11979:3395..3505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11979 3396..3505 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462635.024842-UTR-Ecto-sp13_S_contig11979:3505..42971681462635.024842-UTR-Ecto-sp13_S_contig11979:3505..4297Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11979 3506..4297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11979.1686.1prot_Ecto-sp13_S_contig11979.1686.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11979 363..3505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11979.1686.1

>prot_Ecto-sp13_S_contig11979.1686.1 ID=prot_Ecto-sp13_S_contig11979.1686.1|Name=mRNA_Ecto-sp13_S_contig11979.1686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=761bp
MAATSAWGLGTHKMTADLSASTPVANSSSESPIKAKSFGMVEGATTAPSA
SNGTTAVSSPSAATAAAAAPAVTAANDGTTNNASAAAAAASNGADRVPAS
AGEVGAAGQGEEEASEVAAGTSSDSGDDEEEEEDQGRGGSTVSKPSTPAA
VGREAEGGGSREEEEGPKEALSTEEAGGEKPAAEATVKGKEQPKADGGES
KGEELEVEGSESKDELVKEAVAKEELAAKEGSAKWKEKATTAESNATKDT
TAALNRNGPVESNGGHSPAAAAAAAMAAAAAAAALAAVAAPAAVAAPSPA
PAAAAAAVVAARNASTSPAASSSPRQEVDDHAARASDAATAALAAALASA
TRSSPTPRPARASPPFKSPVPSQQQLLPKAEERGTGAAAAAAAAVGVAES
VAGAGRSGGGSAGRHYTPVMVFRAPQGRSFPQKCSEADVERALSAARFVP
DRSSPAWGGGAPPLPPPLPLPTGSMPCMVGLFKVDETTGVHRCAGNWAMN
KADLQAADKNRASPFEFRMVEAGGAGKGAVRFPHTGKYQGHFLVRQPPKP
VSKVEEKDLHIAFVKNSEGSWNVEGQGNNVYGAFTITGRLSANRELEVYR
AYQKVAKAHHRRASSTAGAGATPGKRPGGGGPGSTPGLHGPNRGKHFSPA
AVGGSGFANGGGSAKAGDSGSETPAPPSRRVSRTPSKLINDIGNDGTTHL
THGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGT
VKSKLESGEYK
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mRNA from alignment at Ecto-sp13_S_contig11979:363..4297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11979.1686.1 ID=mRNA_Ecto-sp13_S_contig11979.1686.1|Name=mRNA_Ecto-sp13_S_contig11979.1686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3935bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11979:363..4297- (Ectocarpus species13 EcNAP12_S_4_19m)
AAATGAAGGAAACACGGCCGTGCAATACCCAACCAACGGACATGCGGTAA AGCTCTCTATCTCACTCCTGTAGTCTCCTACGTACATGAGCGCCCGGCAC GGCAAAGGAGGTGAACTTCTACCGCTCGCGTGACACATACGGCCCAAGTT AGAAGTTCGCGCCAATCAAATCTGACGCAGCACTAGATTTAAAGAACCGA AATTTAAGAAAAGACACAACGACTTACAACGACGAGCCACACACGCTGCC ATTCATCCATTCATCCCCTCCGTTTGGAAAAAATATCTTCATTTGAGATT GGGCGGGAATAATTCCCGGGGAGGAGGAAAAAAAAAAAAAAAAGCGTGGC GTGACGCCCGGGAAGCGTGTGGGCCTGCTGCGGCGGCGGCTACCGAGAGC GTTCGACGCCCGTGATCCGGAGGACTGCTCCTGTGTCCCCGCTGTTGCGG ATCGGCTCGTTTCTATTATTTTTGCGGCGAGGCGCCTTCATATCGGAGTC AAGACTCGTCGGGGGCTTTCTGGGGCGTTTCTGAGAAAGTGGGGCCGAAA TCCCCCGTTCATTTTGTCAGTCACTTTGATTTTGGGGTTGTTTTCCGACC AGAGCGTCACAAAAACTTGGGTCTCTCGGCTCGAGGCGCGTTGATCCCTC CAGGAGCAGAGGGAACGCGGAAGACATCCTGGTTCGGAACGAAGGACCGG CCGCGCCATTGGACTGATCGAATCTCGCGTGACACGTCTAGAGCGGCGAG CACTTTTGTCTTTTCCTGGTCGGTGTGGGCCGTGCGGTGGTAATGGCGGC GACCTCAGCGTGGGGACTCGGGACGCATAAGATGACCGCCGACTTGTCGG CGTCGACTCCCGTAGCCAATTCCTCAAGTGAATCGCCAATTAAGGCGAAG AGGTGAGCCCCAGCGCCTGGTACTCTACCATCCATCCAGCTCACGCGCGG AAGCACCCACGCTGACCTCTGTTTTTCTTTTGTCTGCGTGCTTTTTTGCA CTGTGTCTTTGTTTTTGTGTCGTCTGTTTTTTTGGGCGACGCGTAGCGTT CCTTGTTAAGAGTTCGCCTCTTGTCGGCACAGAGAGACACACAGCAGTGA CCGCGAGAATCGTAGGCTGGCGACAACACGTGACACTCCGATGGCAACGG TTTATCTACCACCTCCGTTGTTGGCTCATCATTACCCTTCAAGTTGAAAA GCGCTCGACTCGTTGGCGTGGGCGTTGGTTTACTGCTGTCCTAAACACGA CGGGCTAGCAGTCGTGGTGTCTCGCACAAGTTGTCGGCTTCGCTGATTTT TGTCAACCGAGCGCCATGAGTCTCCTCCTTTTAGGAAAGAGAGCCAAGTA CTCGCCGCAATTGCTACTGCCGTCGCCTCCCACGATCTCCCGACATATCT TGTCTTGTCTGATTTCACGCCCTTCACTGCAGAAGACTGCCTCGTTGTTC TGATCAATCACACAATACCAGCGAGCACGTTATACCTTTCACACGTTTCG CGCTCCTTCCCCCTACACACCATCGGTTGCTTCGCCTTTTTTTTTTGAAA TCAGGAGCCGGTTGCCTTTTTTTGAAAACAGCAGCCATGCGACGCAATTA TAGCCGTTACCACCAGCGCCTTTTGATCGGCTATGTACCTAACGTGGTGT CGCTGGTTACCTTACCCCTTCATCCAACACACACACACATACACACACGT GGGTTGATTATCTCCACGCCTGAAAGAAATCAACCCGTTCCTCTATTCCT CGCTACCGGCAGCTTCGGCATGGTAGAAGGCGCCACCACTGCCCCCAGCG CGTCAAACGGCACTACAGCGGTTAGCTCGCCATCCGCAGCAACAGCAGCA GCTGCAGCTCCCGCGGTCACGGCGGCAAACGACGGCACCACGAACAACGC CTCCGCAGCCGCGGCCGCCGCCTCAAACGGAGCGGATCGGGTACCGGCGT CCGCGGGGGAAGTTGGCGCGGCGGGGCAGGGGGAGGAGGAAGCTTCGGAG GTGGCGGCGGGGACAAGCTCGGACTCGGGAGATGACGAGGAGGAGGAGGA GGACCAGGGGAGGGGAGGTTCTACTGTTTCCAAACCGAGCACACCAGCAG CTGTGGGGCGAGAGGCTGAGGGGGGTGGGAGCAGGGAGGAGGAGGAGGGG CCAAAGGAGGCGTTGAGTACGGAAGAAGCTGGTGGAGAAAAGCCGGCGGC GGAGGCAACCGTCAAGGGCAAAGAACAGCCGAAGGCTGACGGGGGAGAAT CGAAGGGAGAGGAGCTGGAGGTAGAAGGGTCAGAGTCAAAGGACGAGCTT GTGAAGGAGGCGGTGGCGAAAGAAGAGCTTGCAGCAAAGGAGGGGAGCGC AAAATGGAAGGAGAAGGCGACAACAGCAGAATCTAACGCGACCAAGGATA CGACGGCGGCACTGAATAGAAATGGACCGGTGGAGAGCAACGGTGGCCAC AGTCCCGCTGCCGCCGCTGCTGCCGCTATGGCCGCCGCCGCCGCCGCCGC CGCTCTCGCTGCCGTTGCTGCTCCCGCCGCGGTCGCGGCCCCGTCCCCGG CCCCGGCGGCGGCCGCGGCGGCGGTGGTGGCGGCGCGTAACGCCTCCACG TCCCCAGCGGCGTCTTCTTCCCCACGGCAAGAGGTGGACGATCACGCGGC TCGAGCTTCGGATGCCGCCACGGCGGCGCTAGCGGCGGCGCTCGCGTCGG CTACGAGGAGTTCTCCGACGCCCCGCCCCGCGCGCGCCTCGCCACCGTTC AAGTCGCCCGTCCCTTCCCAGCAGCAGTTGTTGCCGAAGGCAGAGGAACG GGGTACGGGGGCGGCGGCGGCGGCGGCGGCGGCTGTCGGGGTGGCTGAAT CGGTGGCCGGGGCGGGGAGAAGCGGAGGAGGGTCAGCGGGGAGGCACTAC ACTCCGGTGATGGTGTTCCGCGCGCCGCAGGGGAGAAGCTTTCCGCAAAA GTGCAGCGAGGCGGACGTGGAACGCGCGTTATCTGCCGCGCGCTTCGTTC CGGATCGATCCTCACCGGCCTGGGGCGGCGGCGCGCCTCCTCTGCCGCCA CCGTTGCCGCTGCCGACGGGATCGATGCCCTGCATGGTGGGGCTCTTCAA GGTCGACGAGACGACGGGAGTGCACCGGTGCGCGGGTAACTGGGCGATGA ACAAGGCGGACCTGCAGGCTGCCGATAAGAACCGAGCGAGCCCGTTCGAG TTCAGGATGGTGGAAGCGGGCGGCGCGGGGAAGGGGGCGGTACGGTTTCC GCACACTGGGAAGTATCAAGGGCACTTCTTGGTGCGACAACCGCCTAAGC CGGTGTCCAAGGTGGAGGAAAAGGACCTCCACATCGCGTTCGTCAAGAAC TCGGAGGGCAGCTGGAACGTGGAGGGGCAGGGGAACAATGTGTACGGAGC GTTCACCATCACCGGCCGCCTCAGCGCCAACCGAGAGCTAGAGGTCTACC GAGCCTACCAGAAGGTCGCGAAGGCGCACCACCGGCGCGCGAGCAGCACG GCGGGGGCGGGGGCTACGCCGGGGAAAAGACCAGGGGGGGGTGGGCCGGG TAGCACACCCGGCCTGCACGGGCCGAACCGAGGGAAGCACTTTTCGCCGG CCGCGGTAGGGGGTTCTGGTTTTGCAAACGGCGGGGGGTCGGCCAAGGCG GGTGACTCGGGATCGGAGACGCCGGCACCCCCAAGCCGGAGAGTGAGCCG CACGCCGTCGAAGCTGATCAACGACATCGGCAACGACGGTACGACGCACC TCACTCACGGGCTGCGGCGTTGTGTTACAGTGTTGAACAACTTGCGGGCT ATTCGAGGGAAGAGCGAGTGGTTCAACGAGCCGGTGGACTACGTCGGACT CAACCTGCCAGAGTACACCACGATTATCAAGCGGCCGATGGATCTTGGCA CCGTGAAATCAAAGCTGGAGAGCGGAGAGTACAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11979:363..4297-

>mRNA_Ecto-sp13_S_contig11979.1686.1 ID=mRNA_Ecto-sp13_S_contig11979.1686.1|Name=mRNA_Ecto-sp13_S_contig11979.1686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2283bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11979:363..4297- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCGACCTCAGCGTGGGGACTCGGGACGCATAAGATGACCGCCGA
CTTGTCGGCGTCGACTCCCGTAGCCAATTCCTCAAGTGAATCGCCAATTA
AGGCGAAGAGCTTCGGCATGGTAGAAGGCGCCACCACTGCCCCCAGCGCG
TCAAACGGCACTACAGCGGTTAGCTCGCCATCCGCAGCAACAGCAGCAGC
TGCAGCTCCCGCGGTCACGGCGGCAAACGACGGCACCACGAACAACGCCT
CCGCAGCCGCGGCCGCCGCCTCAAACGGAGCGGATCGGGTACCGGCGTCC
GCGGGGGAAGTTGGCGCGGCGGGGCAGGGGGAGGAGGAAGCTTCGGAGGT
GGCGGCGGGGACAAGCTCGGACTCGGGAGATGACGAGGAGGAGGAGGAGG
ACCAGGGGAGGGGAGGTTCTACTGTTTCCAAACCGAGCACACCAGCAGCT
GTGGGGCGAGAGGCTGAGGGGGGTGGGAGCAGGGAGGAGGAGGAGGGGCC
AAAGGAGGCGTTGAGTACGGAAGAAGCTGGTGGAGAAAAGCCGGCGGCGG
AGGCAACCGTCAAGGGCAAAGAACAGCCGAAGGCTGACGGGGGAGAATCG
AAGGGAGAGGAGCTGGAGGTAGAAGGGTCAGAGTCAAAGGACGAGCTTGT
GAAGGAGGCGGTGGCGAAAGAAGAGCTTGCAGCAAAGGAGGGGAGCGCAA
AATGGAAGGAGAAGGCGACAACAGCAGAATCTAACGCGACCAAGGATACG
ACGGCGGCACTGAATAGAAATGGACCGGTGGAGAGCAACGGTGGCCACAG
TCCCGCTGCCGCCGCTGCTGCCGCTATGGCCGCCGCCGCCGCCGCCGCCG
CTCTCGCTGCCGTTGCTGCTCCCGCCGCGGTCGCGGCCCCGTCCCCGGCC
CCGGCGGCGGCCGCGGCGGCGGTGGTGGCGGCGCGTAACGCCTCCACGTC
CCCAGCGGCGTCTTCTTCCCCACGGCAAGAGGTGGACGATCACGCGGCTC
GAGCTTCGGATGCCGCCACGGCGGCGCTAGCGGCGGCGCTCGCGTCGGCT
ACGAGGAGTTCTCCGACGCCCCGCCCCGCGCGCGCCTCGCCACCGTTCAA
GTCGCCCGTCCCTTCCCAGCAGCAGTTGTTGCCGAAGGCAGAGGAACGGG
GTACGGGGGCGGCGGCGGCGGCGGCGGCGGCTGTCGGGGTGGCTGAATCG
GTGGCCGGGGCGGGGAGAAGCGGAGGAGGGTCAGCGGGGAGGCACTACAC
TCCGGTGATGGTGTTCCGCGCGCCGCAGGGGAGAAGCTTTCCGCAAAAGT
GCAGCGAGGCGGACGTGGAACGCGCGTTATCTGCCGCGCGCTTCGTTCCG
GATCGATCCTCACCGGCCTGGGGCGGCGGCGCGCCTCCTCTGCCGCCACC
GTTGCCGCTGCCGACGGGATCGATGCCCTGCATGGTGGGGCTCTTCAAGG
TCGACGAGACGACGGGAGTGCACCGGTGCGCGGGTAACTGGGCGATGAAC
AAGGCGGACCTGCAGGCTGCCGATAAGAACCGAGCGAGCCCGTTCGAGTT
CAGGATGGTGGAAGCGGGCGGCGCGGGGAAGGGGGCGGTACGGTTTCCGC
ACACTGGGAAGTATCAAGGGCACTTCTTGGTGCGACAACCGCCTAAGCCG
GTGTCCAAGGTGGAGGAAAAGGACCTCCACATCGCGTTCGTCAAGAACTC
GGAGGGCAGCTGGAACGTGGAGGGGCAGGGGAACAATGTGTACGGAGCGT
TCACCATCACCGGCCGCCTCAGCGCCAACCGAGAGCTAGAGGTCTACCGA
GCCTACCAGAAGGTCGCGAAGGCGCACCACCGGCGCGCGAGCAGCACGGC
GGGGGCGGGGGCTACGCCGGGGAAAAGACCAGGGGGGGGTGGGCCGGGTA
GCACACCCGGCCTGCACGGGCCGAACCGAGGGAAGCACTTTTCGCCGGCC
GCGGTAGGGGGTTCTGGTTTTGCAAACGGCGGGGGGTCGGCCAAGGCGGG
TGACTCGGGATCGGAGACGCCGGCACCCCCAAGCCGGAGAGTGAGCCGCA
CGCCGTCGAAGCTGATCAACGACATCGGCAACGACGGTACGACGCACCTC
ACTCACGGGCTGCGGCGTTGTGTTACAGTGTTGAACAACTTGCGGGCTAT
TCGAGGGAAGAGCGAGTGGTTCAACGAGCCGGTGGACTACGTCGGACTCA
ACCTGCCAGAGTACACCACGATTATCAAGCGGCCGATGGATCTTGGCACC
GTGAAATCAAAGCTGGAGAGCGGAGAGTACAAG
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