mRNA_Ecto-sp13_S_contig11973.1684.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11973.1684.1
Unique NamemRNA_Ecto-sp13_S_contig11973.1684.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11973.1684.1 vs. uniprot
Match: D7FTY5_ECTSI (RNase NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY5_ECTSI)

HSP 1 Score: 533 bits (1374), Expect = 2.220e-181
Identity = 295/381 (77.43%), Postives = 311/381 (81.63%), Query Frame = 1
Query:    1 MDWAPADVVPLSSSAVGYGEPAGKGTSSPDATMVSAPTNNVNPHAYPGHRPPAXXXXXXXXXXXVAGPPGQAHGGWEGEAGNPEAEPNAAATARSTDPRPVGGRGRDRTPPPRSTTGPASSDSANIAVTALRTLHQQQQRARAQCNDLVQRLLPTEVSPSPSQWSAPPHGQQQRPSPDNGGDNKNTQKXXXXSGRKAK--KKDTDERQPAGTGATLYAPGSVPSGAWPAVPVTTSPSTNPRAGRGRGREATLPAWMTATQETPPGGLQQQVGPGTNSRMPGPSGWPSSGPRQSTQTTAYGDNKTKNKSEPNDKITQGRGATTLSSAAWPTDYHQETSTVVAGNGRKAPLGTTVPSGARANAAPGGLQRQPQLASPRMPRPL 1137
            MDWAPADV P SSSAVG+GEPAGKGT+SPDATMVSAPTNN+NPHA PGH PPA           +AGP GQAHGGWEG AGN E EP+AAATARSTDPRP GGRGRDRTPPPRSTTGPA+S+SA IAV  LR LHQQQQRARA+C+DLVQR LPTE SPSPSQ +AP HGQ                 XXXX        KKDTDE QPAGTGAT YAPGSVPSGAWPAVP TT PSTNPRA RGRGREATLPAWMTATQ TPPGGLQ Q GPGTNSRMPGP+G PSSGP+Q  QTTA+GDNKTKNKSEPNDK TQGRGATTL+SAAWPTDYHQETST VA +GR APLGTTVPSGAR NAAPGGLQ+QPQLASPR PRPL
Sbjct:    1 MDWAPADVAPSSSSAVGFGEPAGKGTASPDATMVSAPTNNLNPHADPGHHPPAPPAAAVATVSAIAGPSGQAHGGWEGVAGNQEGEPDAAATARSTDPRPAGGRGRDRTPPPRSTTGPAASNSAIIAVVDLRALHQQQQRARAECDDLVQRGLPTEASPSPSQQNAPSHGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKDTDEHQPAGTGATFYAPGSVPSGAWPAVPATTRPSTNPRAARGRGREATLPAWMTATQATPPGGLQPQAGPGTNSRMPGPTGLPSSGPQQGAQTTAHGDNKTKNKSEPNDKKTQGRGATTLASAAWPTDYHQETSTTVAVHGRGAPLGTTVPSGARTNAAPGGLQQQPQLASPRAPRPL 381          
BLAST of mRNA_Ecto-sp13_S_contig11973.1684.1 vs. uniprot
Match: A0A6H5KJR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR8_9PHAE)

HSP 1 Score: 435 bits (1119), Expect = 3.060e-143
Identity = 244/347 (70.32%), Postives = 261/347 (75.22%), Query Frame = 1
Query:   97 MVSAPTNNVNPHAYPGHRPPAXXXXXXXXXXXVAGPPGQAHGGWEGEAGNPEAEPNAAATARSTDPRPVGGRGRDRTPPPRSTTGPASSDSANIAVTALRTLHQQQQRARAQCNDLVQRLLPTEVSPSPSQWSAPPHGQQQRPSPDNGGDNKNTQKXXXXSGRKAKKKDTDERQPAGTGATLYAPGSVPSGAWPAVPVTTSPSTNPRAGRGRGREATLPAWMTATQETPPGGLQQQVGPGTNSRMPGPSGWPSSGPRQSTQTTAYGDNKTKNKSEPNDKITQGRGATTLSSAAWPTDYHQETSTVVAGNGRKAPLGTTVPSGARANAAPGGLQRQPQLASPRMPRPL 1137
            MVSA TNN+NPHA  GH PPA             GP GQA+GG                                 TPPPRSTTGPA S+ ANIAV       QQQQRA+A+CND +QRLLPTEV PSPSQ +APPHGQQQRPSPDNGGD+K+TQK    SGRKAKKKDTDERQPAGTGAT Y PGSVPSGAW AVP TTSPSTNPRA RGRGREATLPAWMTATQETPPGGLQQQ GPGT+SRMPGPSG  SSGP+QS +T A+GDNKTKN+S PNDK TQGRGATTL+SAAWPTDYHQETST VAGN R A LGTTVPS A ANAAPGG Q+QPQLASPR+PRPL
Sbjct:    1 MVSASTNNLNPHADTGHHPPAPPVAAVATASTSTGPSGQAYGG---------------------------------TPPPRSTTGPAGSNFANIAVXXXXXXXQQQQRAQAECNDFMQRLLPTEVPPSPSQRNAPPHGQQQRPSPDNGGDSKSTQKRKRKSGRKAKKKDTDERQPAGTGATFYPPGSVPSGAWTAVPATTSPSTNPRAARGRGREATLPAWMTATQETPPGGLQQQAGPGTDSRMPGPSGSHSSGPQQSARTKAHGDNKTKNESGPNDKKTQGRGATTLASAAWPTDYHQETSTTVAGNARGALLGTTVPSRACANAAPGGFQQQPQLASPRVPRPL 314          
BLAST of mRNA_Ecto-sp13_S_contig11973.1684.1 vs. uniprot
Match: A0A6H5KK30_9PHAE (RNase NYN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK30_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.560e-24
Identity = 147/434 (33.87%), Postives = 186/434 (42.86%), Query Frame = 1
Query:    1 MDWAPADVVPLSSSAVGYGEPAGKGTSSPDATMVSAPTN-NVNPHAYPGHRPPAXXXXXXXXXXXVAGPPGQAHGGWEGEAGNPEAEPNAAATARSTDPRPVGGRGRDRTPPPRSTTGPASSDSANIAVTALRTLHQQQQRARAQCNDLVQRLLPTEVSPSPSQWSAPPHGQQQRPSPDNGGDNKNTQKXXXXSGRKAKKKDTDERQPAGTGATL-----YAPGSVPSGAWPA--VPVTTSP--STNPRA-GRGRGREATLPAWMTATQETPPGGLQQQVGPGTNS--RMPGPSGWPSSGPRQSTQTTAYGDNKTKNKSEPNDKITQ-------------------------GRGAT-----TL--------------SSAAWPTDYHQETSTVVAGNGRKAPLGTTVPSGARANAAPGGLQRQPQLASPRMPR 1131
            MDW PA V   SSSA  YGE  G   +SPD   V A T  NV P   P   P             + G  GQ   G EG          AA T  S + RP GGR  ++T P     GPA+               ++QQ+A    N   Q   PT +  S  Q  AP   Q    +  N GD  +  K    S R     D +  +  G GAT      YA         PA   P+T +P  S NP++ GRGRGRE TLPAWMTA + TPPGGLQQQ  PGT S  ++P P+G  SS P+ +TQTTA+G    KN S  +++  +                         G+G++     TL              SS A PT +HQ   T V G+ R   +   V    R + APGGL+   + AS  +PR
Sbjct:    1 MDWTPATVGSSSSSAANYGESTGMVRASPDEMTVFASTGRNVAPPRDPADFP--REHAATTAGTPLGGQSGQR--GREGVVARQAVGSGAAVTVLSRNHRPEGGRDGEKTLPAWMAAGPAALP------------ERRQQQATPVANAPTQTPRPTGLYSSRPQQGAPSKKQ----AGPNDGDRNSRSKI---SDRNRNNYDEEPHRSLGAGATPDVSTPYAMARESRNDTPAPRTPITAAPRPSANPQSVGRGRGRERTLPAWMTAAEATPPGGLQQQSAPGTTSAGQVPRPTGSFSSRPQPTTQTTAHGRYSIKNTSSEDNQTARAAATGTFHVGVGRHGNLQRQGRAPGGQGSSHGMFETLREQYPGSAGVSMAGSSGARPTTHHQSLFTTVVGHRRGLKVRRWVRGETRDDGAPGGLRPYEEGASDSLPR 411          
BLAST of mRNA_Ecto-sp13_S_contig11973.1684.1 vs. uniprot
Match: D7FTX8_ECTSI (RNase NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.230e-22
Identity = 139/438 (31.74%), Postives = 174/438 (39.73%), Query Frame = 1
Query:    1 MDWAPADVVPLSSSAVGYGEPAGKGTSSPDATMVSAPTN-NVNPHAYPGHRPPAXXXXXXXXXXXVAGPPGQAHGGWEGEAGNPEAEPNAAATARSTDPRPVGGRGRDRTPPPRSTTGPASSDSANIAVTALRTLHQQQQRARAQCNDLVQRLLPTEVSPSPSQWSAPPHGQQQRPSPDNGGDNKNTQKXXXXSGRKAKKKDTDERQPAGTGAT-----LYAPGSVPSGAWPAVPVTTSPSTNPRAGRGRGR-----EATLPAWMTATQETPPGGLQQQVGPGTNS--RMPGPSGWPSSGPRQSTQTTAYGDNKTKNKSEPNDKITQGRGATTL--------------------------------------------SSAAWPTDYHQETSTVVAGNGRKAPLGTTVPSGARANAAPGGL---QRQPQLASPRMPRP 1134
            MDW PA V   SSSA  YGE  G   +SPD  MVSA T  NV P   P   P             + G  GQ   G EG   +      AA    S + RP GGR R++T P     GPA+                 QQ+     N   Q   PT +  S  Q  AP    +Q+  P +G  N         + R     D +  +  G GAT     LYA         PA    T+ +  P A           E TLPAWMTA + TPPGGLQQQ  PGT S  R+P P+G  SS P+Q+TQTTA+G    KN S  +++  +     T                                             +S A PT +HQ  S+ VAG+GR   +   V  G R +  PGGL   +  P  + PR  RP
Sbjct:    1 MDWTPAAVGSSSSSAANYGESTGMVRASPDEMMVSASTGRNVAPPRDPADFP--HEHSATAAGTPLGGQSGQR--GREGVVAHQGVGSGAAVAVPSRNHRPEGGRDREKTLPAWMAAGPAALPDGR------------QQQVTPVANAPTQTPRPTGLYSSRPQQGAP---SKQKAGPSDGDRNSRAN----INNRNRNNYDEEPHRSVGAGATPDMSTLYAMARESRNHTPAPRTPTTAAPRPSAXXXXXXXXXXXERTLPAWMTAAEATPPGGLQQQSAPGTTSGGRVPEPTGSFSSCPQQTTQTTAHGRYSVKNTSSEDNQTAKAAATGTFHVGVGHHGNPQRQRRAPGGQGISHGIFETLREQYPGSAGVSMAGASGARPTTHHQSLSSTVAGHGRGLKVRRWVRGGTRDDGTPGGLRPYEEGPFDSVPRASRP 415          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11973.1684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTY5_ECTSI2.220e-18177.43RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJR8_9PHAE3.060e-14370.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK30_9PHAE2.560e-2433.87RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
D7FTX8_ECTSI5.230e-2231.74RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11973contigEcto-sp13_S_contig11973:4091..5227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score547.4
Seed ortholog evalue5.4e-153
Seed eggNOG ortholog2880.D7FTY5
Model size1137
KEGG koko:K18668
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Zc3h12a-like Ribonuclease NYN domain
EggNOG OGs2E7Q9@1,2SE9D@2759
Ec32 ortholog descriptionRibonuclease Zc3h12a-like
Ec32 orthologEc-07_002850.1
Cds size1137
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462634.9301744-CDS-Ecto-sp13_S_contig11973:4090..52271681462634.9301744-CDS-Ecto-sp13_S_contig11973:4090..5227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11973 4091..5227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11973.1684.1prot_Ecto-sp13_S_contig11973.1684.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11973 4091..5227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11973.1684.1

>prot_Ecto-sp13_S_contig11973.1684.1 ID=prot_Ecto-sp13_S_contig11973.1684.1|Name=mRNA_Ecto-sp13_S_contig11973.1684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=379bp
MDWAPADVVPLSSSAVGYGEPAGKGTSSPDATMVSAPTNNVNPHAYPGHR
PPAPPAAAVATVSTVAGPPGQAHGGWEGEAGNPEAEPNAAATARSTDPRP
VGGRGRDRTPPPRSTTGPASSDSANIAVTALRTLHQQQQRARAQCNDLVQ
RLLPTEVSPSPSQWSAPPHGQQQRPSPDNGGDNKNTQKRKRKSGRKAKKK
DTDERQPAGTGATLYAPGSVPSGAWPAVPVTTSPSTNPRAGRGRGREATL
PAWMTATQETPPGGLQQQVGPGTNSRMPGPSGWPSSGPRQSTQTTAYGDN
KTKNKSEPNDKITQGRGATTLSSAAWPTDYHQETSTVVAGNGRKAPLGTT
VPSGARANAAPGGLQRQPQLASPRMPRPL
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mRNA from alignment at Ecto-sp13_S_contig11973:4091..5227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11973.1684.1 ID=mRNA_Ecto-sp13_S_contig11973.1684.1|Name=mRNA_Ecto-sp13_S_contig11973.1684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11973:4091..5227+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTGGGCTCCCGCAGACGTCGTCCCGTTGAGCTCTTCAGCTGTCGG CTACGGGGAGCCTGCGGGAAAGGGAACATCTTCCCCAGATGCCACGATGG TGTCCGCTCCCACCAACAACGTGAACCCACACGCATACCCGGGCCACCGC CCGCCCGCACCACCGGCTGCTGCGGTTGCGACCGTTTCGACAGTTGCTGG TCCGCCCGGACAGGCACATGGGGGGTGGGAAGGTGAAGCGGGGAACCCGG AAGCAGAGCCCAATGCCGCCGCCACGGCCCGATCGACGGATCCACGACCA GTAGGAGGGCGTGGTCGAGACAGGACGCCCCCGCCGCGGTCGACCACGGG CCCGGCGTCTTCCGACTCCGCGAACATTGCCGTTACCGCCCTGCGTACCC TGCACCAGCAGCAACAGCGGGCTCGGGCTCAATGCAATGACTTGGTGCAG AGGCTTCTGCCCACAGAAGTGTCGCCGTCTCCTTCGCAATGGAGTGCTCC GCCACACGGGCAGCAGCAGCGCCCCAGCCCTGACAACGGCGGAGACAACA AGAACACCCAGAAGAGAAAGAGAAAGTCCGGCAGAAAGGCCAAAAAGAAA GACACGGACGAGCGCCAACCGGCCGGGACGGGCGCTACTTTATATGCGCC TGGAAGTGTGCCGTCGGGGGCATGGCCCGCTGTGCCGGTGACAACAAGCC CATCGACGAATCCACGGGCAGGGAGAGGGCGAGGTCGAGAGGCGACGCTA CCGGCGTGGATGACTGCGACCCAGGAAACTCCGCCCGGTGGACTTCAACA GCAAGTGGGGCCTGGAACTAATTCCCGGATGCCCGGGCCTTCGGGGTGGC CCTCATCTGGGCCGCGACAGAGTACCCAAACCACTGCCTACGGTGACAAC AAGACCAAGAATAAATCGGAACCAAATGACAAGATAACCCAAGGAAGAGG AGCCACCACACTGTCGTCCGCGGCATGGCCCACCGACTACCACCAGGAAA CGTCAACAGTGGTTGCAGGAAACGGTCGAAAAGCCCCGCTCGGGACGACG GTGCCTTCCGGGGCACGCGCAAATGCTGCGCCAGGCGGACTCCAACGGCA ACCGCAGCTTGCGAGCCCTCGGATGCCTCGACCTCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11973:4091..5227+

>mRNA_Ecto-sp13_S_contig11973.1684.1 ID=mRNA_Ecto-sp13_S_contig11973.1684.1|Name=mRNA_Ecto-sp13_S_contig11973.1684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11973:4091..5227+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTGGGCTCCCGCAGACGTCGTCCCGTTGAGCTCTTCAGCTGTCGG
CTACGGGGAGCCTGCGGGAAAGGGAACATCTTCCCCAGATGCCACGATGG
TGTCCGCTCCCACCAACAACGTGAACCCACACGCATACCCGGGCCACCGC
CCGCCCGCACCACCGGCTGCTGCGGTTGCGACCGTTTCGACAGTTGCTGG
TCCGCCCGGACAGGCACATGGGGGGTGGGAAGGTGAAGCGGGGAACCCGG
AAGCAGAGCCCAATGCCGCCGCCACGGCCCGATCGACGGATCCACGACCA
GTAGGAGGGCGTGGTCGAGACAGGACGCCCCCGCCGCGGTCGACCACGGG
CCCGGCGTCTTCCGACTCCGCGAACATTGCCGTTACCGCCCTGCGTACCC
TGCACCAGCAGCAACAGCGGGCTCGGGCTCAATGCAATGACTTGGTGCAG
AGGCTTCTGCCCACAGAAGTGTCGCCGTCTCCTTCGCAATGGAGTGCTCC
GCCACACGGGCAGCAGCAGCGCCCCAGCCCTGACAACGGCGGAGACAACA
AGAACACCCAGAAGAGAAAGAGAAAGTCCGGCAGAAAGGCCAAAAAGAAA
GACACGGACGAGCGCCAACCGGCCGGGACGGGCGCTACTTTATATGCGCC
TGGAAGTGTGCCGTCGGGGGCATGGCCCGCTGTGCCGGTGACAACAAGCC
CATCGACGAATCCACGGGCAGGGAGAGGGCGAGGTCGAGAGGCGACGCTA
CCGGCGTGGATGACTGCGACCCAGGAAACTCCGCCCGGTGGACTTCAACA
GCAAGTGGGGCCTGGAACTAATTCCCGGATGCCCGGGCCTTCGGGGTGGC
CCTCATCTGGGCCGCGACAGAGTACCCAAACCACTGCCTACGGTGACAAC
AAGACCAAGAATAAATCGGAACCAAATGACAAGATAACCCAAGGAAGAGG
AGCCACCACACTGTCGTCCGCGGCATGGCCCACCGACTACCACCAGGAAA
CGTCAACAGTGGTTGCAGGAAACGGTCGAAAAGCCCCGCTCGGGACGACG
GTGCCTTCCGGGGCACGCGCAAATGCTGCGCCAGGCGGACTCCAACGGCA
ACCGCAGCTTGCGAGCCCTCGGATGCCTCGACCTCTA
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