mRNA_Ecto-sp13_S_contig11973.1684.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11973.1684.1 vs. uniprot
Match: D7FTY5_ECTSI (RNase NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY5_ECTSI) HSP 1 Score: 533 bits (1374), Expect = 2.220e-181 Identity = 295/381 (77.43%), Postives = 311/381 (81.63%), Query Frame = 1
Query: 1 MDWAPADVVPLSSSAVGYGEPAGKGTSSPDATMVSAPTNNVNPHAYPGHRPPAXXXXXXXXXXXVAGPPGQAHGGWEGEAGNPEAEPNAAATARSTDPRPVGGRGRDRTPPPRSTTGPASSDSANIAVTALRTLHQQQQRARAQCNDLVQRLLPTEVSPSPSQWSAPPHGQQQRPSPDNGGDNKNTQKXXXXSGRKAK--KKDTDERQPAGTGATLYAPGSVPSGAWPAVPVTTSPSTNPRAGRGRGREATLPAWMTATQETPPGGLQQQVGPGTNSRMPGPSGWPSSGPRQSTQTTAYGDNKTKNKSEPNDKITQGRGATTLSSAAWPTDYHQETSTVVAGNGRKAPLGTTVPSGARANAAPGGLQRQPQLASPRMPRPL 1137
MDWAPADV P SSSAVG+GEPAGKGT+SPDATMVSAPTNN+NPHA PGH PPA +AGP GQAHGGWEG AGN E EP+AAATARSTDPRP GGRGRDRTPPPRSTTGPA+S+SA IAV LR LHQQQQRARA+C+DLVQR LPTE SPSPSQ +AP HGQ XXXX KKDTDE QPAGTGAT YAPGSVPSGAWPAVP TT PSTNPRA RGRGREATLPAWMTATQ TPPGGLQ Q GPGTNSRMPGP+G PSSGP+Q QTTA+GDNKTKNKSEPNDK TQGRGATTL+SAAWPTDYHQETST VA +GR APLGTTVPSGAR NAAPGGLQ+QPQLASPR PRPL
Sbjct: 1 MDWAPADVAPSSSSAVGFGEPAGKGTASPDATMVSAPTNNLNPHADPGHHPPAPPAAAVATVSAIAGPSGQAHGGWEGVAGNQEGEPDAAATARSTDPRPAGGRGRDRTPPPRSTTGPAASNSAIIAVVDLRALHQQQQRARAECDDLVQRGLPTEASPSPSQQNAPSHGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKDTDEHQPAGTGATFYAPGSVPSGAWPAVPATTRPSTNPRAARGRGREATLPAWMTATQATPPGGLQPQAGPGTNSRMPGPTGLPSSGPQQGAQTTAHGDNKTKNKSEPNDKKTQGRGATTLASAAWPTDYHQETSTTVAVHGRGAPLGTTVPSGARTNAAPGGLQQQPQLASPRAPRPL 381
BLAST of mRNA_Ecto-sp13_S_contig11973.1684.1 vs. uniprot
Match: A0A6H5KJR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR8_9PHAE) HSP 1 Score: 435 bits (1119), Expect = 3.060e-143 Identity = 244/347 (70.32%), Postives = 261/347 (75.22%), Query Frame = 1
Query: 97 MVSAPTNNVNPHAYPGHRPPAXXXXXXXXXXXVAGPPGQAHGGWEGEAGNPEAEPNAAATARSTDPRPVGGRGRDRTPPPRSTTGPASSDSANIAVTALRTLHQQQQRARAQCNDLVQRLLPTEVSPSPSQWSAPPHGQQQRPSPDNGGDNKNTQKXXXXSGRKAKKKDTDERQPAGTGATLYAPGSVPSGAWPAVPVTTSPSTNPRAGRGRGREATLPAWMTATQETPPGGLQQQVGPGTNSRMPGPSGWPSSGPRQSTQTTAYGDNKTKNKSEPNDKITQGRGATTLSSAAWPTDYHQETSTVVAGNGRKAPLGTTVPSGARANAAPGGLQRQPQLASPRMPRPL 1137
MVSA TNN+NPHA GH PPA GP GQA+GG TPPPRSTTGPA S+ ANIAV QQQQRA+A+CND +QRLLPTEV PSPSQ +APPHGQQQRPSPDNGGD+K+TQK SGRKAKKKDTDERQPAGTGAT Y PGSVPSGAW AVP TTSPSTNPRA RGRGREATLPAWMTATQETPPGGLQQQ GPGT+SRMPGPSG SSGP+QS +T A+GDNKTKN+S PNDK TQGRGATTL+SAAWPTDYHQETST VAGN R A LGTTVPS A ANAAPGG Q+QPQLASPR+PRPL
Sbjct: 1 MVSASTNNLNPHADTGHHPPAPPVAAVATASTSTGPSGQAYGG---------------------------------TPPPRSTTGPAGSNFANIAVXXXXXXXQQQQRAQAECNDFMQRLLPTEVPPSPSQRNAPPHGQQQRPSPDNGGDSKSTQKRKRKSGRKAKKKDTDERQPAGTGATFYPPGSVPSGAWTAVPATTSPSTNPRAARGRGREATLPAWMTATQETPPGGLQQQAGPGTDSRMPGPSGSHSSGPQQSARTKAHGDNKTKNESGPNDKKTQGRGATTLASAAWPTDYHQETSTTVAGNARGALLGTTVPSRACANAAPGGFQQQPQLASPRVPRPL 314
BLAST of mRNA_Ecto-sp13_S_contig11973.1684.1 vs. uniprot
Match: A0A6H5KK30_9PHAE (RNase NYN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK30_9PHAE) HSP 1 Score: 115 bits (288), Expect = 2.560e-24 Identity = 147/434 (33.87%), Postives = 186/434 (42.86%), Query Frame = 1
Query: 1 MDWAPADVVPLSSSAVGYGEPAGKGTSSPDATMVSAPTN-NVNPHAYPGHRPPAXXXXXXXXXXXVAGPPGQAHGGWEGEAGNPEAEPNAAATARSTDPRPVGGRGRDRTPPPRSTTGPASSDSANIAVTALRTLHQQQQRARAQCNDLVQRLLPTEVSPSPSQWSAPPHGQQQRPSPDNGGDNKNTQKXXXXSGRKAKKKDTDERQPAGTGATL-----YAPGSVPSGAWPA--VPVTTSP--STNPRA-GRGRGREATLPAWMTATQETPPGGLQQQVGPGTNS--RMPGPSGWPSSGPRQSTQTTAYGDNKTKNKSEPNDKITQ-------------------------GRGAT-----TL--------------SSAAWPTDYHQETSTVVAGNGRKAPLGTTVPSGARANAAPGGLQRQPQLASPRMPR 1131
MDW PA V SSSA YGE G +SPD V A T NV P P P + G GQ G EG AA T S + RP GGR ++T P GPA+ ++QQ+A N Q PT + S Q AP Q + N GD + K S R D + + G GAT YA PA P+T +P S NP++ GRGRGRE TLPAWMTA + TPPGGLQQQ PGT S ++P P+G SS P+ +TQTTA+G KN S +++ + G+G++ TL SS A PT +HQ T V G+ R + V R + APGGL+ + AS +PR
Sbjct: 1 MDWTPATVGSSSSSAANYGESTGMVRASPDEMTVFASTGRNVAPPRDPADFP--REHAATTAGTPLGGQSGQR--GREGVVARQAVGSGAAVTVLSRNHRPEGGRDGEKTLPAWMAAGPAALP------------ERRQQQATPVANAPTQTPRPTGLYSSRPQQGAPSKKQ----AGPNDGDRNSRSKI---SDRNRNNYDEEPHRSLGAGATPDVSTPYAMARESRNDTPAPRTPITAAPRPSANPQSVGRGRGRERTLPAWMTAAEATPPGGLQQQSAPGTTSAGQVPRPTGSFSSRPQPTTQTTAHGRYSIKNTSSEDNQTARAAATGTFHVGVGRHGNLQRQGRAPGGQGSSHGMFETLREQYPGSAGVSMAGSSGARPTTHHQSLFTTVVGHRRGLKVRRWVRGETRDDGAPGGLRPYEEGASDSLPR 411
BLAST of mRNA_Ecto-sp13_S_contig11973.1684.1 vs. uniprot
Match: D7FTX8_ECTSI (RNase NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX8_ECTSI) HSP 1 Score: 108 bits (270), Expect = 5.230e-22 Identity = 139/438 (31.74%), Postives = 174/438 (39.73%), Query Frame = 1
Query: 1 MDWAPADVVPLSSSAVGYGEPAGKGTSSPDATMVSAPTN-NVNPHAYPGHRPPAXXXXXXXXXXXVAGPPGQAHGGWEGEAGNPEAEPNAAATARSTDPRPVGGRGRDRTPPPRSTTGPASSDSANIAVTALRTLHQQQQRARAQCNDLVQRLLPTEVSPSPSQWSAPPHGQQQRPSPDNGGDNKNTQKXXXXSGRKAKKKDTDERQPAGTGAT-----LYAPGSVPSGAWPAVPVTTSPSTNPRAGRGRGR-----EATLPAWMTATQETPPGGLQQQVGPGTNS--RMPGPSGWPSSGPRQSTQTTAYGDNKTKNKSEPNDKITQGRGATTL--------------------------------------------SSAAWPTDYHQETSTVVAGNGRKAPLGTTVPSGARANAAPGGL---QRQPQLASPRMPRP 1134
MDW PA V SSSA YGE G +SPD MVSA T NV P P P + G GQ G EG + AA S + RP GGR R++T P GPA+ QQ+ N Q PT + S Q AP +Q+ P +G N + R D + + G GAT LYA PA T+ + P A E TLPAWMTA + TPPGGLQQQ PGT S R+P P+G SS P+Q+TQTTA+G KN S +++ + T +S A PT +HQ S+ VAG+GR + V G R + PGGL + P + PR RP
Sbjct: 1 MDWTPAAVGSSSSSAANYGESTGMVRASPDEMMVSASTGRNVAPPRDPADFP--HEHSATAAGTPLGGQSGQR--GREGVVAHQGVGSGAAVAVPSRNHRPEGGRDREKTLPAWMAAGPAALPDGR------------QQQVTPVANAPTQTPRPTGLYSSRPQQGAP---SKQKAGPSDGDRNSRAN----INNRNRNNYDEEPHRSVGAGATPDMSTLYAMARESRNHTPAPRTPTTAAPRPSAXXXXXXXXXXXERTLPAWMTAAEATPPGGLQQQSAPGTTSGGRVPEPTGSFSSCPQQTTQTTAHGRYSVKNTSSEDNQTAKAAATGTFHVGVGHHGNPQRQRRAPGGQGISHGIFETLREQYPGSAGVSMAGASGARPTTHHQSLSSTVAGHGRGLKVRRWVRGGTRDDGTPGGLRPYEEGPFDSVPRASRP 415 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11973.1684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11973.1684.1 >prot_Ecto-sp13_S_contig11973.1684.1 ID=prot_Ecto-sp13_S_contig11973.1684.1|Name=mRNA_Ecto-sp13_S_contig11973.1684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=379bp MDWAPADVVPLSSSAVGYGEPAGKGTSSPDATMVSAPTNNVNPHAYPGHRback to top mRNA from alignment at Ecto-sp13_S_contig11973:4091..5227+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11973.1684.1 ID=mRNA_Ecto-sp13_S_contig11973.1684.1|Name=mRNA_Ecto-sp13_S_contig11973.1684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11973:4091..5227+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11973:4091..5227+ >mRNA_Ecto-sp13_S_contig11973.1684.1 ID=mRNA_Ecto-sp13_S_contig11973.1684.1|Name=mRNA_Ecto-sp13_S_contig11973.1684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11973:4091..5227+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |