mRNA_Ecto-sp13_S_contig1196.1674.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1196.1674.1
Unique NamemRNA_Ecto-sp13_S_contig1196.1674.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Match: D8LFF7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF7_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 4.170e-106
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 1
Query:    1 MMSVLKVLLLALALVASVLAGTTPEGKAFLAANKDKEGVVETASGLQYKILKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEVQGPAAPVSAEL 480
            MMS LKVLLLALALVASVLAGTTPEGKAFLAANKDKEGVVETASGLQYK+LKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEVQGPAAPVSAEL
Sbjct:    1 MMSFLKVLLLALALVASVLAGTTPEGKAFLAANKDKEGVVETASGLQYKVLKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEVQGPAAPVSAEL 160          
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Match: R1ENV3_EMIHU (Peptidylprolyl isomerase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ENV3_EMIHU)

HSP 1 Score: 205 bits (521), Expect = 2.910e-65
Identity = 100/146 (68.49%), Postives = 116/146 (79.45%), Query Frame = 1
Query:   37 ALVASVLAGTTPEGKAFLAANKDKEGVVETASGLQYKILKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEVQGPAAPVSA 474
            AL+A   A TTPEG A+L  NK+K GVV   SGLQYK+LK   AG K+PLVGT C CHYRGT I G EFDSS+KRG+PT FAPNQVIKGWTEAMQ+M EGD WELY+PSELAYGD +R   ITPGAVLVFE+E++EV+G + P +A
Sbjct:    4 ALLALAAAATTPEGLAWLDENKNKAGVVVLPSGLQYKVLKEAPAGAKSPLVGTPCSCHYRGTLIDGTEFDSSYKRGQPTTFAPNQVIKGWTEAMQLMGEGDKWELYVPSELAYGDRQRGQHITPGAVLVFEIEILEVKGDSKPKAA 149          
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Match: A0A835YXV4_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.210e-62
Identity = 95/134 (70.90%), Postives = 111/134 (82.84%), Query Frame = 1
Query:   46 ASVLAGTTPEGKAFLAANKDKEGVVETASGLQYKILKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEV 447
            A+ LAGTT EG  FLAANK KEGVVE  SGLQYK++ SG+  G  P   T C CHY+GTTI G+EFDSSFKRG+P  FAPNQVIKGWTEAMQ+M EGDHWEL+IPSELAYGD++ + LITPGAVLVFEL++++V
Sbjct:   18 ATALAGTTQEGLDFLAANKAKEGVVELPSGLQYKVVASGDPKGPKPGPSTPCECHYKGTTIKGDEFDSSFKRGRPAVFAPNQVIKGWTEAMQLMHEGDHWELFIPSELAYGDARLNDLITPGAVLVFELQMLKV 151          
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Match: A0A7S3WX35_9SPIT (Peptidylprolyl isomerase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WX35_9SPIT)

HSP 1 Score: 197 bits (502), Expect = 3.240e-62
Identity = 93/141 (65.96%), Postives = 111/141 (78.72%), Query Frame = 1
Query:   31 ALALVASVLAGTTPEGKAFLAANKDKEGVVETASGLQYKILKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEVQG 453
            ALA++ +   GTTP+G A+LA N  KEGVV   SGLQYK++    AG K+PL  T C CHYRGT I G EFDSS+KRG+PT FAPNQV+KGWTEAMQ+M EGD WELY+PSELAYGD +R   ITPGAVL+FELE++EV+G
Sbjct:   13 ALAMLLATATGTTPDGLAWLAENAKKEGVVTLPSGLQYKVITEAPAGAKSPLANTPCSCHYRGTLIDGTEFDSSYKRGQPTTFAPNQVVKGWTEAMQLMGEGDKWELYLPSELAYGDRQRGKFITPGAVLIFELEMLEVKG 153          
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Match: A0A7S0SJ29_9CHLO (Peptidylprolyl isomerase n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJ29_9CHLO)

HSP 1 Score: 191 bits (485), Expect = 1.610e-59
Identity = 90/133 (67.67%), Postives = 109/133 (81.95%), Query Frame = 1
Query:   49 SVLAGTTPEGKAFLAANKDKEGVVETASGLQYKILKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEV 447
            S +AG+TP GKA+L ANK KEGVVET SGLQY+++ +G+ GG +P  GT+C CHYRGTTI G+EFDSS+ RG+PT FAPNQVI GWTEAMQ+M EG  WEL IPSE+AYGD +  A ITPGAVLVF LE+++V
Sbjct:   35 SAVAGSTPAGKAYLEANKLKEGVVETKSGLQYRVMVAGKEGGPSPKAGTRCSCHYRGTTIDGKEFDSSYSRGQPTTFAPNQVIAGWTEAMQIMTEGSKWELTIPSEIAYGDRQMGADITPGAVLVFTLEILKV 167          
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Match: C1DZP4_MICCC (Peptidylprolyl isomerase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZP4_MICCC)

HSP 1 Score: 189 bits (481), Expect = 3.910e-59
Identity = 92/138 (66.67%), Postives = 109/138 (78.99%), Query Frame = 1
Query:   34 LALVASVLAGTTPEGKAFLAANKDKEGVVETASGLQYKILKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEV 447
            LAL  +  A TTPEG A+L ANK K+GV+E  SGLQY++L  G AGG +P   T+C CHYRGTTI G+EFDSS+KRG+PT FAPNQVI GWTEAMQ+MKEGD WEL IPSE+AYGD +    ITPGAVLVF LE+++V
Sbjct:   14 LALAGAANAATTPEGVAYLQANKLKDGVIELPSGLQYRVLVEGPAGGPSPGPSTRCACHYRGTTIDGKEFDSSYKRGQPTEFAPNQVIAGWTEAMQLMKEGDKWELVIPSEIAYGDRQMGPDITPGAVLVFTLEIVKV 151          
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Match: A0A0L0GA71_9EUKA (Peptidylprolyl isomerase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GA71_9EUKA)

HSP 1 Score: 182 bits (462), Expect = 3.120e-56
Identity = 90/144 (62.50%), Postives = 107/144 (74.31%), Query Frame = 1
Query:   34 LALVASVLAGTTPEGKAFLAANKDKEGVVETASGLQYKILKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEVQGPAAP 465
            +AL A V AGTTPEG  FL  NKDKEGV+  ASGLQYK+L SG   G +PLV T C CHY G  I G+ FDSS+ RG+PT FAPNQVIKGWTEAMQ+M++GD WE+YIPSELAYGD  R  +I  GAVL+F +E+++V     P
Sbjct:    9 IALSAVVYAGTTPEGLKFLYENKDKEGVITLASGLQYKVLSSGPGDGPSPLVNTPCDCHYEGKFIDGKVFDSSYARGQPTKFAPNQVIKGWTEAMQLMRQGDKWEMYIPSELAYGD--RGGMIPAGAVLIFTMEIVKVHETPKP 150          
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Match: A0A6V1N267_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N267_HETAK)

HSP 1 Score: 182 bits (461), Expect = 5.550e-56
Identity = 92/144 (63.89%), Postives = 106/144 (73.61%), Query Frame = 1
Query:   55 LAGTTPEGKAFLAANKDKEGVVETASGLQYKILKSG-EAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEVQG-PAAPVSAEL 480
            +AGTTPEG A+L  NK KEGVVE  SGLQYK++KSG E  G     GT C CHYRGT I G EFDSS+KRG+P+ FAPNQVIKGWTEAMQ+M  GD WEL IPSELAYGD +R   I PG VL+F+LE+++  G P     AEL
Sbjct:   18 IAGTTPEGLAYLKENKQKEGVVELPSGLQYKVIKSGAEVEGYKIQAGTSCECHYRGTLIDGTEFDSSYKRGQPSRFAPNQVIKGWTEAMQLMNVGDKWELTIPSELAYGDRQRGKFIRPGMVLLFDLEILDCNGYPGVAGEAEL 161          
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Match: K8F319_9CHLO (Peptidylprolyl isomerase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F319_9CHLO)

HSP 1 Score: 182 bits (462), Expect = 7.150e-56
Identity = 92/144 (63.89%), Postives = 102/144 (70.83%), Query Frame = 1
Query:   61 GTTPEGKAFLAANKDKEGVVETASGLQYKILKSGEAGGKTPLVGTKCLCHYRGTTIT---------------GEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEV 447
            GTT  GKAFL  N  KEGVV   SGLQY++LKSG  GGK P V T CLCHYRGTTI                GEEFDSS+ RG+PT FAPNQVIKGWTEAMQ+M EGD WEL IPSELAYGD      ITPG+VLVFE+E+++V
Sbjct:   35 GTTEAGKAFLTENALKEGVVSLPSGLQYRVLKSGPKGGKKPKVNTPCLCHYRGTTIEVRIYDFFAGTARVNRGEEFDSSYNRGEPTKFAPNQVIKGWTEAMQLMSEGDKWELVIPSELAYGDRAMGPQITPGSVLVFEMEIVKV 178          
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Match: A0A090N2Y7_OSTTA (Peptidylprolyl isomerase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N2Y7_OSTTA)

HSP 1 Score: 179 bits (455), Expect = 4.530e-55
Identity = 89/139 (64.03%), Postives = 104/139 (74.82%), Query Frame = 1
Query:   31 ALALVASVLAGTTPEGKAFLAANKDKEGVVETASGLQYKILKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIKGWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEV 447
            A A  A   AG   +G A+L ANK KEGV   ASGLQY++LKSG A G +P   T+C CHY G TI GEEFDSS+KRG+PT FAPNQVI GWTEAMQ+MKEGD WEL IPSELAYG S  + LI P +VLVF++EL++V
Sbjct:   21 AFAAFAGAFAGAKEDGLAYLEANKLKEGVTTLASGLQYRVLKSGPADGPSPSKSTRCKCHYSGRTIEGEEFDSSYKRGEPTTFAPNQVISGWTEAMQLMKEGDKWELVIPSELAYGRSSPTPLIKPDSVLVFDMELVKV 159          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1196.1674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFF7_ECTSI4.170e-10698.75Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
R1ENV3_EMIHU2.910e-6568.49Peptidylprolyl isomerase n=1 Tax=Emiliania huxleyi... [more]
A0A835YXV4_9STRA2.210e-6270.90Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A7S3WX35_9SPIT3.240e-6265.96Peptidylprolyl isomerase (Fragment) n=1 Tax=Stromb... [more]
A0A7S0SJ29_9CHLO1.610e-5967.67Peptidylprolyl isomerase n=1 Tax=Mantoniella antar... [more]
C1DZP4_MICCC3.910e-5966.67Peptidylprolyl isomerase n=1 Tax=Micromonas commod... [more]
A0A0L0GA71_9EUKA3.120e-5662.50Peptidylprolyl isomerase n=1 Tax=Sphaeroforma arct... [more]
A0A6V1N267_HETAK5.550e-5663.89Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
K8F319_9CHLO7.150e-5663.89Peptidylprolyl isomerase n=1 Tax=Bathycoccus prasi... [more]
A0A090N2Y7_OSTTA4.530e-5564.03Peptidylprolyl isomerase n=2 Tax=Ostreococcus taur... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1196contigEcto-sp13_S_contig1196:13256..16973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score309.3
Seed ortholog evalue1.1e-81
Seed eggNOG ortholog2880.D8LFF7
Model size483
KEGG koko:K03773
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
Ec32 ortholog descriptionSecreted FKBP domain protein
Ec32 orthologEc-07_006150.1
EC5.2.1.8
Cds size483
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1196.1674.1prot_Ecto-sp13_S_contig1196.1674.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1196 13256..16973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.9706588-CDS-Ecto-sp13_S_contig1196:13255..133741681462633.9706588-CDS-Ecto-sp13_S_contig1196:13255..13374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1196 13256..13374 -
1681462633.9828048-CDS-Ecto-sp13_S_contig1196:13726..137601681462633.9828048-CDS-Ecto-sp13_S_contig1196:13726..13760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1196 13727..13760 -
1681462633.9961534-CDS-Ecto-sp13_S_contig1196:14177..142161681462633.9961534-CDS-Ecto-sp13_S_contig1196:14177..14216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1196 14178..14216 -
1681462634.0089507-CDS-Ecto-sp13_S_contig1196:14524..145981681462634.0089507-CDS-Ecto-sp13_S_contig1196:14524..14598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1196 14525..14598 -
1681462634.0244572-CDS-Ecto-sp13_S_contig1196:15750..158951681462634.0244572-CDS-Ecto-sp13_S_contig1196:15750..15895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1196 15751..15895 -
1681462634.1293008-CDS-Ecto-sp13_S_contig1196:16901..169731681462634.1293008-CDS-Ecto-sp13_S_contig1196:16901..16973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1196 16902..16973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1196.1674.1

>prot_Ecto-sp13_S_contig1196.1674.1 ID=prot_Ecto-sp13_S_contig1196.1674.1|Name=mRNA_Ecto-sp13_S_contig1196.1674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MMSVLKVLLLALALVASVLAGTTPEGKAFLAANKDKEGVVETASGLQYKI
LKSGEAGGKTPLVGTKCLCHYRGTTITGEEFDSSFKRGKPTAFAPNQVIK
GWTEAMQMMKEGDHWELYIPSELAYGDSKRSALITPGAVLVFELELIEVQ
GPAAPVSAEL*
back to top

mRNA from alignment at Ecto-sp13_S_contig1196:13256..16973-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1196.1674.1 ID=mRNA_Ecto-sp13_S_contig1196.1674.1|Name=mRNA_Ecto-sp13_S_contig1196.1674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3718bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1196:13256..16973- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTCCGTTCTGAAGGTCCTCTTGCTGGCCCTGGCTCTCGTGGCGAG TGTCTTGGCGGGGACGACGCCGGTGAGAACTAAACGAGGAGCACTCTTTT TTTTGTTTTTGACAGCAAAGGCAAGCAGGCGGCAAAGAGCTGTGCGGCGC GGAGGGTTGGACAATCTTCTTTCCTCCGGCACCAACAAACAGGCCTTGGT GCCACCTCTTGGCCGTTCGCTCTTGCCCTGTTGGCGATGAGAGCTCACCC TCATTTTGGGCGCGCACGATGAGGGGTGGTGTGTACGGAACCTTTTGTAC CTTCCTTTGCTGGGAGTACAGGGTGGATTTTGCGGGAGATCCTTTTGTGT TGCCGACAACGATCATCTCTGATCTCCTGCCTTTTGGAGAGGAGACAGCA GTTTGCCACCACACAAGCAGCCGCCCCTGCTGTAGGCCGGCAGTGGCTGC CGCTGCTGCAGCAGCTGCTGCTGCTGCTCGGTTGTGTTCCCGAGGAAATT GGGTGGGCGGTTATGTGGCGCGTCAAACCTGTCCTGTGCTTCTCATCGAC GCTTTCGCGGTCTCGATGAAAGGCTTGTGCCTCTCATCGACAACGTCGCA GTCTCGATGCCCCCTAGAAACAACCTCTAGTCTACCCACACGTGCGGGGC ATTGGCGTAGTAGGAACTTGAACTTCTCTTGTGTGCGGTACCGGTGGCCT AATGTGTTGCGTGTCAGAACTTTCAAGGGTTAGTTGTACAATAGCTTCCA TGAGAAAGGTCAGCATTCAAATGCACACGCGACGGCATCCGCAAAAGACA TTGCTGCTGTAGATCTGCTGCAGAATGCGCTTCCGTAAGGAAGGCAGGAT TGCCCCTAAATTTCCTGCATGAACAACCGGGACATACACATGCCAGTCTG TTGCCACAACAAGGAAGGCATGTAAATAGGGAACGCAAATCACGAACGCA CCAAACATTGCTGGGATGCGAGTGCAGAAAGCGCTAGTTCGACAACCGTA TGTGATACTTGGGAATACTTCTCGTGCACACCTCACGAGACACGTGTATG GATCCCATGTTGACCGTGGGCGTTGCAGGAGGGCAAGGCGTTCCTCGCCG CCAACAAGGACAAGGAGGGCGTCGTCGAAACCGCCTCTGGCCTGCAGTAC AAGATCCTCAAGTCAGGGGAGGCAGGGGGGAAGACTCCCCTGGTCGGGAC CAAGTGCTTGTGCCACTACAGGGGTAAGCAGGGCATTGCGGACAACGGTT TACAGCGAGTACGCTGGTTTCATGGTGTTACGTCGTCCGTGTTTTGCTGC CACAGACAAACTCCCCGCCATTGTGGCCCTTTGTCCGCGCTCTGTACATA TTTGCGCCTGCTTTGAAAGTGGACCGCCCGACACGAGCTTTCCCACGGAT CGGCTGTCCCCTGCCTGAACCATGCAGAAGCTGTTACCCGTCCCCAGTAC CGTCCCCATATGTGCAGTCTGTAGAGGGACACCCGAAGTGTCAGACAAAC AGCTAACAGCGTAGGCGGTGTTTGGGAACAGACGCCAAGCTGACAGCAGT GTTCGGAAAAAGGCATCCAGCTGGCAGCAGCGTTTGGGAATAGACAACCA GCTGGCAGCAGCAGCGTTTAGGAATAGACAGCCAGCTGACAGCAGTGCCT GAGAGCAGGATCGGGGTAGAGAGGCAAAAATCGAGAACCCACCCATGAAA CACTACTAGTGATTTAGCTTCTGCGACACACCATGGGAATAAGAAACTTT TTGTGTATTTCGGCCCAGTCTCGGTACCCAGATACATGCATCGGGCGTCC CGAATGCTGAAGAGCATGTAAGCCGACCTTCCAGACTTCCGGTAGTTCTT GGGGAATCCAACCGATATATGGGGGATTCGTGGTATCAGAGCCCCCGAGC TACTGTTCTGGTACGGTAGTTTGAGCAGAGGGTCACGGGTGTGTTTGGTG TGGAGTTTTCACACCAGTACGCGAAACGGAATGGGGCGCTCTTGCTGCTG CTACCACCGCTGTTGCCCTTGTTCCCCCTCCTGATGGAACTTGTCGACCC CTCGCGATGCTCTCCATGCTCGTGTCGCCGTCCTCGGTGCTGTTGCATCC GTGTCGTGCTGTTGCTGCTGCTGCTGCTGCTTTTTCGCTTAACTATCGGC GTTTTGGTTTTTGCTATATCAGCAGCGGCTTGCATGGTCTAATAGAGTGC TGGTGGCTTTAAGAGATGGTCGGAAAAAGCCAACCCCGCTGTCTTCAATC CGTTTTTGCTCATGGTCCCAAGCAAAAAACTCTTGCATTTTTCTCTTTGA TCATCTCTCTTGAACAGTAGCCGCTGCTGCTGTACTGCTTCTTGTGTGTG TGTATTTCCTTCCCCCTTTGAAAAGGAACCACCATCACGGGAGAGGAGTT CGACAGCTCCTTCAAGCGAGGCAAGCCGACCGCGTTTGCGCCCAACCAGG TACCGACCACACGAACAAAGTTAGCCCCGTCAAGCTACACAAAGCTCTGC TTCCCTCTTGTAGTTTCAACAGCCATTCTTGGCCATTCTCATGAGACATG CGGTAGGATCGCGCGTCTTGCTTACGATAGTGCGATGGGTTCATCTATCT CGAAAGCGAACTGCTTCAGGCGGAATAACTGGTTATTTTTCACAAACACC CCGACCCCAGAGATTTCGCGGAGGGACCGGGGTAAAAGAACACATCCGTG TGGCTAAAGCTCTCCAAAAAACGTGCGCCCTGTTTGCTGAACATCTTCTT GATGCAGGTGATCAAGGGCTGGACGGAGGCTATGCAAATGATGAAGGTGA TGATGTTATGATTGGATATTGAAGATAGCCGATACCTCGTGTCGTTGTCG TCTAGGAGTACCAGTAGGACTGGCTTTGGGTCGTCCATTTCGGTGAAGAA ATGAATCGTGCCGACCTGTCGGACATGGGTTACCCAAGCAACAACTCAGC GTGTTTGAACTTGTCAACGCAGCACGTTCTTAGTTGACGTCCTTGGCCTA GTGCCGAAAAACACAGAGGGCACAGAGTGATCAGAAAGAGGTGCGGGAGG CTTTCGTTGGCACGCATGGAATTTTTTTTTGAGGGCTCGCTGTCGCCACC TGCACTTGCAAGTATTCTCGACTGAACTTGAAAACACGATGTGTAGCTAC CTTGTTTATGTAACCGTCGTAACATATGTGTGCTGCTGCCCTGATCCGTC CCACAAACTGCAGGAGGGCGACCACTGGGAACTCTACATTCCCTCCGGTA AGATGGATAAGCAGTGAACGGGAGAGGGCACCGTGAATGTCCCTCTAACC ACGGTCCCCCCGTTGCCAGGCAGTCAGTCGTTACGCTTGATCACCACGGG TTGCGATGTACGCTTCAGTGGCGTCCCGGAGATGATACGATCTCCGAGGT TATGGACGATGCTGCCTCTGCTTATTCTGTGGGCTACAACTGCTGCGCGC CCTCTGATTCGGCTGGAAAGATGCACCTTTCCGCTCAAGGAAAACAGTAC CTCCACAAAAACAACCTGTCACTTTGGCTTTCTGTCCCGCCAGTCACTCG CTTCGTTTCTGTAACCACGGTTGTTCTCGTCCCCTCCTTTGACACGCAGA ACTCGCCTACGGCGACAGCAAGCGATCGGCGCTCATCACCCCGGGAGCCG TCCTTGTCTTCGAGCTCGAGCTCATTGAAGTGCAAGGGCCTGCAGCTCCC GTGTCCGCCGAGCTATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1196:13256..16973-

>mRNA_Ecto-sp13_S_contig1196.1674.1 ID=mRNA_Ecto-sp13_S_contig1196.1674.1|Name=mRNA_Ecto-sp13_S_contig1196.1674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1196:13256..16973- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTCCGTTCTGAAGGTCCTCTTGCTGGCCCTGGCTCTCGTGGCGAG
TGTCTTGGCGGGGACGACGCCGGAGGGCAAGGCGTTCCTCGCCGCCAACA
AGGACAAGGAGGGCGTCGTCGAAACCGCCTCTGGCCTGCAGTACAAGATC
CTCAAGTCAGGGGAGGCAGGGGGGAAGACTCCCCTGGTCGGGACCAAGTG
CTTGTGCCACTACAGGGGAACCACCATCACGGGAGAGGAGTTCGACAGCT
CCTTCAAGCGAGGCAAGCCGACCGCGTTTGCGCCCAACCAGGTGATCAAG
GGCTGGACGGAGGCTATGCAAATGATGAAGGAGGGCGACCACTGGGAACT
CTACATTCCCTCCGAACTCGCCTACGGCGACAGCAAGCGATCGGCGCTCA
TCACCCCGGGAGCCGTCCTTGTCTTCGAGCTCGAGCTCATTGAAGTGCAA
GGGCCTGCAGCTCCCGTGTCCGCCGAGCTATAG
back to top