mRNA_Ecto-sp13_S_contig11958.1669.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE) HSP 1 Score: 540 bits (1390), Expect = 1.350e-172 Identity = 316/352 (89.77%), Postives = 323/352 (91.76%), Query Frame = 1
Query: 1 MDTDGDGXXXXXXXXXXXXXXXXXGSMEATDIGEGADSDGDGINEGSGDDEPDTTRMEIGXXXXXXXXXXX-------RTSGEKTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRAKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTVIWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRADKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALNIFTSSSVRDILPLHRPVAEERE 1035
MDTDGDGXXXXXXXXXXXXXXXXX SMEA IGEGAD EPDTT MEIGXXXXXXXXXXX RTSGEKTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPR KSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPS IGV+VG+TTV+W+GKVQKVEAFDYGFYTLGDK+ KLTQWDVL+NRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRA+KNLDGIDRHSQLGKEKLLEIKKNTDKVRDFAL IFTSSSVRDILPLHRP AEERE
Sbjct: 551 MDTDGDGXXXXXXXXXXXXXXXXXXSMEAMAIGEGADXXXXXXXXXXXXXEPDTTPMEIGXXXXXXXXXXXXXXXXXXRTSGEKTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRTKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSHIGVEVGKTTVMWKGKVQKVEAFDYGFYTLGDKEFKLTQWDVLENRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRAEKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALKIFTSSSVRDILPLHRPDAEERE 902
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59) HSP 1 Score: 478 bits (1229), Expect = 1.450e-166 Identity = 288/360 (80.00%), Postives = 304/360 (84.44%), Query Frame = 1
Query: 1 MDTDGDGXXXXXXXXXXXXXXXXXGSMEATDIGEGADSDGDGINEGSGDDEPDTTRMEIGXXXXXXXXXXX-------RTSGEKTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRAKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTVIWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRADKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALNIFTSSSVRDILPLHRPVAEEREVSMLLNVF 1059
MDTDGDGXXXXXXXXXXXXXXXXX S+EA IGEGADS PDTT MEIG XXXXXXXXX RTSG+KTARVNKPVGQRGLRSTTLAQELEEPIL CMEPFLENNRRASDELVEERRDTAPRA +KPAG GTIADAARFLAMLSHDKKD IEIKEGVYFPRSS IKSQYELDYAF+PSDIGV+VGRTTV W KVQ VEAFDYG YTLGDKKSKLTQWDVL+NR G GVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDV G L A+K+LDGID SQLG+E+LL IK +TD+VRDFAL IFT SSVRDILP+ R ++ EV MLLN+F
Sbjct: 1 MDTDGDGXXXXXXXXXXXXXXXXXXSVEAMAIGEGADSXXXXXXXXXXXXXPDTTPMEIGGGXXXXXXXXXXXXXXXXRTSGKKTARVNKPVGQRGLRSTTLAQELEEPILACMEPFLENNRRASDELVEERRDTAPRAPNKPAGTGTIADAARFLAMLSHDKKDSIEIKEGVYFPRSSKSEIKSQYELDYAFDPSDIGVEVGRTTVTWGNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTGSSVRDILPVPRD--DKGEVRMLLNMF 358
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE) HSP 1 Score: 123 bits (309), Expect = 2.860e-27 Identity = 72/197 (36.55%), Postives = 114/197 (57.87%), Query Frame = 1
Query: 418 GTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTVIWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRADKNLDGIDRHS-QLGKEKLLEIKKNTDKVRDFALNIFTSSSVRDILP 1005
G +AD + + +++ + V F RS L +K ++ +Y FNP+ I V VG T V +G++ VE+FD+G Y L K +TQW++LQNRRG G TL+ +LRR+I Q YVVM + VP N G +GM+ ++ A+ RA + D ID S ++ E+L +++ +K+R +L IFT+ + + LP
Sbjct: 184 GQVADR----GLCDASAPNSLKLNDKVGFKRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLAGHKP-ITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIATEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFTTLPLSETLP 375
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI) HSP 1 Score: 119 bits (299), Expect = 4.140e-26 Identity = 65/175 (37.14%), Postives = 104/175 (59.43%), Query Frame = 1
Query: 478 IEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTVIWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRADKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALNIFTSSSVRDIL 1002
IEI +GVY+ R+ L ++ Y+ YAF+P +IGV + T V + ++ V++ D+G YTL ++S++TQW++L+NR VTL+ DLRR+I LV Y VM + VP + V GM+ + + A+ RA ++ D D ++ +L+ IK D +RD +L +FT V L
Sbjct: 106 IEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSG---VVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFTKIPVEATL 277
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 1.710e-16 Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 469 KDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTVIWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYIGQLVLT 768
+D IEI EGVY R+ + ++ Y+ Y F+P IGV G T+V +G V V++ D G Y L S +TQW++L NR G GVTL+ DLRR+I L T
Sbjct: 103 EDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHLTDT 202
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: D7FZA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA9_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 1.290e-5 Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 238 RVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRAKSKPAGAGTIADAARFL 447
R + G + ST L + L EP LPCME F++ NR+ +DE ++ TAP +P G GT+AD A L
Sbjct: 555 RQRRAEGTTRVDSTELGRWLTEPFLPCMEAFIQQNRKIADERAKDHEGTAPTTPKRPVGVGTLADLANPL 624 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11958.1669.1 >prot_Ecto-sp13_S_contig11958.1669.1 ID=prot_Ecto-sp13_S_contig11958.1669.1|Name=mRNA_Ecto-sp13_S_contig11958.1669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=353bp MDTDGDGGDGGDSSDGDGGSDGLDGSMEATDIGEGADSDGDGINEGSGDDback to top mRNA from alignment at Ecto-sp13_S_contig11958:2113..3171- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11958.1669.1 ID=mRNA_Ecto-sp13_S_contig11958.1669.1|Name=mRNA_Ecto-sp13_S_contig11958.1669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11958:2113..3171- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11958:2113..3171- >mRNA_Ecto-sp13_S_contig11958.1669.1 ID=mRNA_Ecto-sp13_S_contig11958.1669.1|Name=mRNA_Ecto-sp13_S_contig11958.1669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11958:2113..3171- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |