mRNA_Ecto-sp13_S_contig11958.1669.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11958.1669.1
Unique NamemRNA_Ecto-sp13_S_contig11958.1669.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 540 bits (1390), Expect = 1.350e-172
Identity = 316/352 (89.77%), Postives = 323/352 (91.76%), Query Frame = 1
Query:    1 MDTDGDGXXXXXXXXXXXXXXXXXGSMEATDIGEGADSDGDGINEGSGDDEPDTTRMEIGXXXXXXXXXXX-------RTSGEKTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRAKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTVIWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRADKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALNIFTSSSVRDILPLHRPVAEERE 1035
            MDTDGDGXXXXXXXXXXXXXXXXX SMEA  IGEGAD             EPDTT MEIGXXXXXXXXXXX       RTSGEKTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPR KSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPS IGV+VG+TTV+W+GKVQKVEAFDYGFYTLGDK+ KLTQWDVL+NRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRA+KNLDGIDRHSQLGKEKLLEIKKNTDKVRDFAL IFTSSSVRDILPLHRP AEERE
Sbjct:  551 MDTDGDGXXXXXXXXXXXXXXXXXXSMEAMAIGEGADXXXXXXXXXXXXXEPDTTPMEIGXXXXXXXXXXXXXXXXXXRTSGEKTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRTKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSHIGVEVGKTTVMWKGKVQKVEAFDYGFYTLGDKEFKLTQWDVLENRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRAEKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALKIFTSSSVRDILPLHRPDAEERE 902          
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59)

HSP 1 Score: 478 bits (1229), Expect = 1.450e-166
Identity = 288/360 (80.00%), Postives = 304/360 (84.44%), Query Frame = 1
Query:    1 MDTDGDGXXXXXXXXXXXXXXXXXGSMEATDIGEGADSDGDGINEGSGDDEPDTTRMEIGXXXXXXXXXXX-------RTSGEKTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRAKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTVIWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRADKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALNIFTSSSVRDILPLHRPVAEEREVSMLLNVF 1059
            MDTDGDGXXXXXXXXXXXXXXXXX S+EA  IGEGADS             PDTT MEIG  XXXXXXXXX       RTSG+KTARVNKPVGQRGLRSTTLAQELEEPIL CMEPFLENNRRASDELVEERRDTAPRA +KPAG GTIADAARFLAMLSHDKKD IEIKEGVYFPRSS   IKSQYELDYAF+PSDIGV+VGRTTV W  KVQ VEAFDYG YTLGDKKSKLTQWDVL+NR G GVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDV G L  A+K+LDGID  SQLG+E+LL IK +TD+VRDFAL IFT SSVRDILP+ R   ++ EV MLLN+F
Sbjct:    1 MDTDGDGXXXXXXXXXXXXXXXXXXSVEAMAIGEGADSXXXXXXXXXXXXXPDTTPMEIGGGXXXXXXXXXXXXXXXXRTSGKKTARVNKPVGQRGLRSTTLAQELEEPILACMEPFLENNRRASDELVEERRDTAPRAPNKPAGTGTIADAARFLAMLSHDKKDSIEIKEGVYFPRSSKSEIKSQYELDYAFDPSDIGVEVGRTTVTWGNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTGSSVRDILPVPRD--DKGEVRMLLNMF 358          
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.860e-27
Identity = 72/197 (36.55%), Postives = 114/197 (57.87%), Query Frame = 1
Query:  418 GTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTVIWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRADKNLDGIDRHS-QLGKEKLLEIKKNTDKVRDFALNIFTSSSVRDILP 1005
            G +AD      +      + +++ + V F RS L  +K  ++ +Y FNP+ I V VG T V  +G++  VE+FD+G Y L   K  +TQW++LQNRRG G TL+ +LRR+I Q    YVVM +  VP   N G   +GM+ ++  A+ RA  + D ID  S ++  E+L  +++  +K+R  +L IFT+  + + LP
Sbjct:  184 GQVADR----GLCDASAPNSLKLNDKVGFKRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLAGHKP-ITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIATEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFTTLPLSETLP 375          
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 4.140e-26
Identity = 65/175 (37.14%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  478 IEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTVIWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRADKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALNIFTSSSVRDIL 1002
            IEI +GVY+ R+ L  ++  Y+  YAF+P +IGV +  T V  + ++  V++ D+G YTL  ++S++TQW++L+NR    VTL+ DLRR+I  LV  Y VM  + VP +     V  GM+ + + A+ RA ++ D  D   ++   +L+ IK   D +RD +L +FT   V   L
Sbjct:  106 IEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSG---VVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFTKIPVEATL 277          
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.710e-16
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  469 KDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTVIWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYIGQLVLT 768
            +D IEI EGVY  R+ +  ++  Y+  Y F+P  IGV  G T+V  +G V  V++ D G Y L    S +TQW++L NR G GVTL+ DLRR+I  L  T
Sbjct:  103 EDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHLTDT 202          
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Match: D7FZA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA9_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.290e-5
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1
Query:  238 RVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRAKSKPAGAGTIADAARFL 447
            R  +  G   + ST L + L EP LPCME F++ NR+ +DE  ++   TAP    +P G GT+AD A  L
Sbjct:  555 RQRRAEGTTRVDSTELGRWLTEPFLPCMEAFIQQNRKIADERAKDHEGTAPTTPKRPVGVGTLADLANPL 624          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11958.1669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L073_9PHAE1.350e-17289.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0000161E591.450e-16680.00hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L6S7_9PHAE2.860e-2736.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ27_ECTSI4.140e-2637.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQV3_ECTSI1.710e-1645.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZA9_ECTSI1.290e-541.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11958contigEcto-sp13_S_contig11958:2113..3171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score84.0
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog2880.D7FHJ0
Model size1059
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2EVBK@1,2SXC2@2759
Cds size1059
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.5659537-CDS-Ecto-sp13_S_contig11958:2112..31711681462633.5659537-CDS-Ecto-sp13_S_contig11958:2112..3171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11958 2113..3171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11958.1669.1prot_Ecto-sp13_S_contig11958.1669.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11958 2113..3171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11958.1669.1

>prot_Ecto-sp13_S_contig11958.1669.1 ID=prot_Ecto-sp13_S_contig11958.1669.1|Name=mRNA_Ecto-sp13_S_contig11958.1669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=353bp
MDTDGDGGDGGDSSDGDGGSDGLDGSMEATDIGEGADSDGDGINEGSGDD
EPDTTRMEIGGGGGGGAGGGGRTSGEKTARVNKPVGQRGLRSTTLAQELE
EPILPCMEPFLENNRRASDELVEERRDTAPRAKSKPAGAGTIADAARFLA
MLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSDIGVDVGRTTV
IWEGKVQKVEAFDYGFYTLGDKKSKLTQWDVLQNRRGSGVTLEQDLRRYI
GQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRADKNLDGIDRHS
QLGKEKLLEIKKNTDKVRDFALNIFTSSSVRDILPLHRPVAEEREVSMLL
NVF
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mRNA from alignment at Ecto-sp13_S_contig11958:2113..3171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11958.1669.1 ID=mRNA_Ecto-sp13_S_contig11958.1669.1|Name=mRNA_Ecto-sp13_S_contig11958.1669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11958:2113..3171- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACTGATGGGGACGGCGGTGACGGCGGTGACAGCAGCGATGGTGA TGGGGGCAGTGACGGATTGGACGGATCTATGGAGGCCACGGACATCGGTG AGGGCGCCGACAGCGATGGTGACGGCATCAACGAAGGCAGCGGTGACGAC GAACCTGATACAACACGTATGGAGATCGGCGGCGGTGGCGGTGGTGGTGC TGGTGGTGGAGGCCGAACCTCTGGGGAGAAAACGGCGAGGGTAAACAAGC CCGTGGGTCAAAGGGGCCTCAGATCCACCACCCTTGCCCAAGAGTTGGAG GAGCCAATTTTGCCTTGCATGGAGCCATTCTTGGAAAACAATCGGCGAGC TTCGGACGAGCTAGTTGAAGAGCGCAGGGATACGGCGCCGCGTGCGAAAA GCAAGCCTGCTGGGGCTGGTACGATCGCGGATGCCGCCAGGTTTCTCGCT ATGCTATCTCACGACAAAAAAGATGGCATCGAAATCAAGGAGGGGGTCTA CTTCCCGCGCTCGAGCCTTGGTGCAATCAAATCCCAATACGAGTTGGACT ACGCCTTCAATCCTTCAGACATCGGAGTGGATGTGGGGAGGACAACGGTT ATATGGGAAGGCAAGGTGCAGAAGGTTGAAGCTTTCGACTACGGCTTCTA CACGCTGGGCGACAAGAAATCCAAGCTGACTCAATGGGATGTCCTGCAAA ACCGACGTGGTAGCGGGGTGACATTAGAACAAGACCTTCGGCGGTACATT GGGCAGCTGGTGTTAACGTATGTTGTCATGCAGAGCACCGGAGTCCCGGA GATCGAGAACGACGGCAACGTGCATGATGGGATGATGCTAGACGTGGATG GTGCGTTAACCAGGGCGGATAAAAACCTGGATGGTATCGATCGCCACAGC CAGCTGGGGAAAGAGAAGCTGCTCGAGATCAAAAAGAATACGGACAAGGT GCGCGACTTCGCCCTGAATATCTTCACCAGCTCGTCGGTACGAGACATAC TTCCGCTACACAGACCAGTCGCTGAGGAGAGAGAGGTGAGCATGTTGTTA AATGTCTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11958:2113..3171-

>mRNA_Ecto-sp13_S_contig11958.1669.1 ID=mRNA_Ecto-sp13_S_contig11958.1669.1|Name=mRNA_Ecto-sp13_S_contig11958.1669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11958:2113..3171- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACTGATGGGGACGGCGGTGACGGCGGTGACAGCAGCGATGGTGA
TGGGGGCAGTGACGGATTGGACGGATCTATGGAGGCCACGGACATCGGTG
AGGGCGCCGACAGCGATGGTGACGGCATCAACGAAGGCAGCGGTGACGAC
GAACCTGATACAACACGTATGGAGATCGGCGGCGGTGGCGGTGGTGGTGC
TGGTGGTGGAGGCCGAACCTCTGGGGAGAAAACGGCGAGGGTAAACAAGC
CCGTGGGTCAAAGGGGCCTCAGATCCACCACCCTTGCCCAAGAGTTGGAG
GAGCCAATTTTGCCTTGCATGGAGCCATTCTTGGAAAACAATCGGCGAGC
TTCGGACGAGCTAGTTGAAGAGCGCAGGGATACGGCGCCGCGTGCGAAAA
GCAAGCCTGCTGGGGCTGGTACGATCGCGGATGCCGCCAGGTTTCTCGCT
ATGCTATCTCACGACAAAAAAGATGGCATCGAAATCAAGGAGGGGGTCTA
CTTCCCGCGCTCGAGCCTTGGTGCAATCAAATCCCAATACGAGTTGGACT
ACGCCTTCAATCCTTCAGACATCGGAGTGGATGTGGGGAGGACAACGGTT
ATATGGGAAGGCAAGGTGCAGAAGGTTGAAGCTTTCGACTACGGCTTCTA
CACGCTGGGCGACAAGAAATCCAAGCTGACTCAATGGGATGTCCTGCAAA
ACCGACGTGGTAGCGGGGTGACATTAGAACAAGACCTTCGGCGGTACATT
GGGCAGCTGGTGTTAACGTATGTTGTCATGCAGAGCACCGGAGTCCCGGA
GATCGAGAACGACGGCAACGTGCATGATGGGATGATGCTAGACGTGGATG
GTGCGTTAACCAGGGCGGATAAAAACCTGGATGGTATCGATCGCCACAGC
CAGCTGGGGAAAGAGAAGCTGCTCGAGATCAAAAAGAATACGGACAAGGT
GCGCGACTTCGCCCTGAATATCTTCACCAGCTCGTCGGTACGAGACATAC
TTCCGCTACACAGACCAGTCGCTGAGGAGAGAGAGGTGAGCATGTTGTTA
AATGTCTTT
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