mRNA_Ecto-sp13_S_contig11957.1668.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11957.1668.1
Unique NamemRNA_Ecto-sp13_S_contig11957.1668.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11957.1668.1 vs. uniprot
Match: D7FTX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX5_ECTSI)

HSP 1 Score: 462 bits (1190), Expect = 7.940e-163
Identity = 230/251 (91.63%), Postives = 240/251 (95.62%), Query Frame = 1 
Query:    1 QVAKLRVQSINYPGTLNASRKHSATHGYGGAQEDPWGVSQGLAGREAISCRRGLANRPSSKEELPVTVVAMPKVETGYSAREKLWRAFLAHRQLALGRGALACLAQLSEQSTFTLERRISTANLMIGEQGCMLRLGGIRWGPEIHGVGHATTTALRHRETDLCLGLAETLEGLLGLGRSKDDDETGAEDKNPADSEELGSNAQDKMSLMLVNVLSWLRLPAGSREGITLKGLLGHQYFAPVRHTDIESEIP 753
            QVAKLRVQSI+YPG LNASRKHSATHGYGG Q+DPW VSQGLAGREAISCRRGLANRP+S EELPVTVVAMPKVETGYSAREKLWRAFLAHRQLALGRGALAC+AQLSEQSTFTLERRISTANLMIGEQGC+LRLGG+RWG EIHGVG AT TALR R+TDLCLGLAETLEGLLG GRSKDDDETGAED NPADS+ELGSN QDKMSLMLVNVLSWLRLPAGSREGITLKGLLGHQYFAP+RHTD+ESEIP
Sbjct:   69 QVAKLRVQSISYPGALNASRKHSATHGYGGTQDDPWEVSQGLAGREAISCRRGLANRPNSNEELPVTVVAMPKVETGYSAREKLWRAFLAHRQLALGRGALACVAQLSEQSTFTLERRISTANLMIGEQGCVLRLGGLRWGAEIHGVGQATETALRRRDTDLCLGLAETLEGLLGFGRSKDDDETGAEDNNPADSKELGSNTQDKMSLMLVNVLSWLRLPAGSREGITLKGLLGHQYFAPLRHTDVESEIP 319
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BLAST of mRNA_Ecto-sp13_S_contig11957.1668.1 vs. uniprot
Match: A0A6H5KMA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMA3_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.370e-42
Identity = 82/111 (73.87%), Postives = 88/111 (79.28%), Query Frame = 1 
Query:  427 EIHGVGHATTTALRHRETDLCLGLAETL--EGLLGLGRSKDDDETGAEDKNPADSEELGSNAQDKMSLMLVNVLSWLRLPAGSREGITLKGLLGHQYFAPVRHTDIESEIP 753
            +IHG  H   T   HR       +  T+   GLLGLGRSKDD ETGAE  NPADS+ELGSNAQDKMSLMLVNVLSWLRLPAGSREGI+LKGLLGHQYFAP+RHTDIESEIP
Sbjct:   17 DIHGQPHDRRTGAAHRTPMGRCRVVVTVAQNGLLGLGRSKDD-ETGAEGNNPADSKELGSNAQDKMSLMLVNVLSWLRLPAGSREGISLKGLLGHQYFAPLRHTDIESEIP 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11957.1668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTX5_ECTSI7.940e-16391.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMA3_9PHAE2.370e-4273.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11957contigEcto-sp13_S_contig11957:2..4520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size753
Hectar predicted targeting categoryother localisation
Exons7
Cds size753
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11957.1668.1prot_Ecto-sp13_S_contig11957.1668.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11957 2..4520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.4564273-CDS-Ecto-sp13_S_contig11957:1..831681462633.4564273-CDS-Ecto-sp13_S_contig11957:1..83Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11957 2..83 -
1681462633.4729383-CDS-Ecto-sp13_S_contig11957:397..5551681462633.4729383-CDS-Ecto-sp13_S_contig11957:397..555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11957 398..555 -
1681462633.486239-CDS-Ecto-sp13_S_contig11957:1258..13841681462633.486239-CDS-Ecto-sp13_S_contig11957:1258..1384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11957 1259..1384 -
1681462633.505471-CDS-Ecto-sp13_S_contig11957:1921..20151681462633.505471-CDS-Ecto-sp13_S_contig11957:1921..2015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11957 1922..2015 -
1681462633.5149481-CDS-Ecto-sp13_S_contig11957:3522..35961681462633.5149481-CDS-Ecto-sp13_S_contig11957:3522..3596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11957 3523..3596 -
1681462633.523158-CDS-Ecto-sp13_S_contig11957:4073..42061681462633.523158-CDS-Ecto-sp13_S_contig11957:4073..4206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11957 4074..4206 -
1681462633.5317008-CDS-Ecto-sp13_S_contig11957:4434..45201681462633.5317008-CDS-Ecto-sp13_S_contig11957:4434..4520Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11957 4435..4520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11957.1668.1

>prot_Ecto-sp13_S_contig11957.1668.1 ID=prot_Ecto-sp13_S_contig11957.1668.1|Name=mRNA_Ecto-sp13_S_contig11957.1668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
QVAKLRVQSINYPGTLNASRKHSATHGYGGAQEDPWGVSQGLAGREAISC
RRGLANRPSSKEELPVTVVAMPKVETGYSAREKLWRAFLAHRQLALGRGA
LACLAQLSEQSTFTLERRISTANLMIGEQGCMLRLGGIRWGPEIHGVGHA
TTTALRHRETDLCLGLAETLEGLLGLGRSKDDDETGAEDKNPADSEELGS
NAQDKMSLMLVNVLSWLRLPAGSREGITLKGLLGHQYFAPVRHTDIESEI
P
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mRNA from alignment at Ecto-sp13_S_contig11957:2..4520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11957.1668.1 ID=mRNA_Ecto-sp13_S_contig11957.1668.1|Name=mRNA_Ecto-sp13_S_contig11957.1668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11957:2..4520- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGCGAAATTAAGGGTGCAATCCATCAACTACCCGGGGACTCTGAA
CGCCTCAAGGAAGCATTCCGCCACCCACGGCTACGGGTGAGACCTGAAGA
ATGTAATAGGGGGTGATGGTGATCGAAAATGGAATACGTAACCACTGCCG
AAATGATGCTTGCGTTGGCGAAGCACGACAACTACCCCCTCGATCCTCGC
CCGGCCATCTTACACATCGTAAGCAACTGAAGAACCATTACGTGTATCCT
CTTTCTGTTGGGTCTTTCTCGCGGTGATTGCACCCGCGCGTGGTTTCAAC
AATTGTGCCATCAGGGGTGCCCAGGAAGACCCTTGGGGAGTCTCCCAGGG
GCTGGCAGGCAGGGAGGCGATTTCTTGTCGACGAGGACTTGCCAACCGTC
CCAGCTCGAAAGAAGAGCTTCCTGTCACGGTGGTGGCCATGCCTAAGGTT
TGAGGGGCCGACAGAAGTGCTATCGTTTTTCCTCGACTGCCCTGGTGTCG
TCACTATTGCATGACACATGAAAGAGCAATGTATGCATACCACGCGATTG
AGGAATCTAGCGAAGGCACCGATGTCGGTCACTGAATCAGAGAGCGTCCT
TGAGAGGTTTATTTGCGTTGTAGGCGTGCCCAGAAATTCTTGAGATCCTA
GTGTTCTCTTGGAGCAGCTGAAACAACTATAAAGGGCACATTGCTGCGAC
CGGAGAAGCGAGTCCGCACGATTGCGCGTGGATACCGTAACTACTTCGAC
GAAGAAACGAGCACGCGTGTTTCGGTTCACATCGTTAGTCGTGCATACCA
TGCTGCTGCTCGCGATCTCTAACGTCGAACGTTTATGGCGAGAGTTATGA
AAAAGGTCGGCCTGCTTCCCCAAGAGTCGTGACACGTTCATATCCTTATT
GCGTCGCGTGGTATTCCTGTACAGGTAGAGACGGGCTATTCGGCAAGAGA
AAAGCTGTGGAGAGCTTTCCTAGCCCACAGGCAGCTGGCCCTTGGCAGGT
AAGACGAGAGCCTATTGCGAAATTGTCATCGACCGAACCTGAACTACGAC
TCAGATTCTGGCCAAGAGGAAAACGCAGCACTCCATCGAGATCATTTCAA
GGGCATCATGGCAATCTCAAGCGGAACTTCTCAGGGCCTCGGATACGACA
ATAGACCCAACGCTGAGCGACCCCACAGACCAAAGGTACAACCCCGAAGG
TGCTTCAACCACGAATCAACGCGTCGTCGGTGAATCAACACGAAATGAGT
GTGGCTTGCTTCGGCCTGTTCGATTTGTATCTCTCCGTCGTTTTGCTCGT
GGTCCCGGCAGTTGTGTGATGCGCTCCTTCGGCGTTGCTGATCGCGATCC
GAGTGAGACGCTCTTCTACTTTGAGTATGTTAGGGCCAGGTGAGACATAT
CGTGCATCGTTGGTGCCGCCACCTTTCGTGCGAACTCCAAGCAAGTAAGC
AAGCAAGTTATATCTCCTCATCTAAAACATCAACCGTCGTGGGGTGCGCC
TTTTGAACCGGTTCCGGCTAAGCGATGCTTTGCGGATCATCTGGCAGCCG
ACCCGGACCATAAGCAAACTTGGTGGGCAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCTAGATGAAGACCGAGGTAGCC
TGCAAGGTTGAGGTCGATTCCAAGACACCTTGTTGGGGGTTTTGAGGGGG
AACAGGTCGGCACTTGCAACAACGAGCCGTCTCGAGGAAATTAACCCCTC
CCAACCCCAAACTATTCAAACACGCAGGCCAGCTTCAGTCTTGCTTTTGC
GAAGGCGTTTGCGTGAAGGAGAGCTGCTCTTCCGTCATTGGGCTAGGTGA
AGTGTCGGTTTGTTGGTGTACTATTATGCACAAGCAAGAAACGAGTTTGC
GGCCCAGCGTCCAGCTCGCCAATGGGACATGCACGAAACGTTCTTGCGAC
CGTTGTAGCTCCGTGGAGCATATTCCAAAACAGCGCAGCGGTCGTCCGGA
CGCATGTTGAAGCTCCAGACGAGGAACGCTTAATGATGTAAATGTCCTTC
ACCAGAGGTTCTCGTATTGAAAACCTCACCGAAATAAAGTGGTGCCGCAT
GCCAGACAATAACCGGAATCGGCAAGTGTACGGCTGGTAGGATGTCCTAT
CGAAGTCGTCGACCCCTACGAGCTCCGAAAGCTGGATTTTCGCCTGAACA
AAGCTCAAATGCCCGCCGTCGACTTGTATCTGCACCTGGCCCTGGCCGTT
TTCAGAGGTGCTCTTGCATGCTTGGCGCAGTTGTCGGAACAGAGTACGTT
TACGTTGGAGAGGCGGATATCTACGGCCAATCTCATGATAGGCGAACAGG
TGGGTGGTGAGCAGCATACAGTCACGGCCGGGGCTCGTTTCGAGGGCCGA
CTTTCATGCTCACGACTGCATTCACCCATTCGGCACCACATGCCAGGGAG
GTCGCTTTCAGACGTTACGGTGGGCGAAGACCCCATCATAATAAGTGAAA
TCTGCGACAAAATCTGACGTTACTTGAATCAGGGTATGCAGTACGTAAAT
ACAGTGCAGAATCTCGGCGCGTGCATTTATGTAGTTGTCAGAATGCTTTT
CTTAAACGCTTTAATGGCGGCGGGCACTGCAACTTTCCCGGTCCAAACCT
TGCATACCCTAAACACATGCATGTACTGTCAGTGGCTGGTATGGCGTTGT
GATGACGAAGTGCCTTGTCGGTGTAGGCGGCCTTGCACCCCAAGCGCACC
ACTCGAAACCTGGTTGGAAAATGTCGCCTCGGATTCCAGCAGGTTTCGGG
TCAGTAGCCTTACTCAAAACGAATTATCAGCAGAATGAGCTGACCTTCTC
TTCCTCTTCCACTTTTGCGGAATATCATTAACTAAGGGATGCATGCTGCG
CTTGGGTGGGATTCGTTGGGGTCCCGAGATCCACGGAGTAGGACATGCGA
CGACGACAGCGCTGCGGCATAGAGAAACCGATCTTTGCCTCGGGCTCGCA
GAAACGCTCGAGGTGAGCAGTTTCCTGGTCCTGATCATTATTGGTACTTC
CGATGGGAAGCGACACGGGCATCCCACAGGTGCGTCTAATGGGAGTGTGG
GAAGGCCCATGGGGTGCGTGGAACGGCCGATGAAACTTCCCACACGAACA
GCTCATGGGCCAGTGTGACGTGCAACTAGGACGTCCCTTGGGTGTCTCAG
CCGTCGCATGAGCATGCGTGAGCAGGCGCTGCCCATAAGACGCCCATGGG
ACGCTGCCTGGTTGTTGTAACCGTAGCCCAAAACGTGAGGAAACACTGGT
AGCCCCTGGCGTTTATCCATGCGACTTGAGAAGCGTGGGATGACCCATGG
GACGCGTTGGACGGCCCACGGGACGGCCGTGAGACACCCCACTGTGTGAC
CCATGAGACATTCAGCGAAGCGGTTGCGTTGGACATCCCTCAGGTCCCAT
CAGTCTTTTAGAGCGCCACCTATACCCCACCACAAATACATGTACCTGGG
TGGTTGATTGAGAATTTTTGGGAAACGTTCTGTGCGTGGACCATGGATGT
TGTTGTTCGGCCGTCCTTGAAGTTGTAAATCTGACGTAGGCGGGGATGAA
CAACACAGTAAGTGTTCGTCAAGATGGCGATTGTTCGCAGGGGCGCATCG
CATAAGCAGCAATCTTCCTCGGTTTGACTATACGCACCAAACGTGCAATA
CCTCACATGCGGTAGGGACTTCTGGGGCTGGGACGCTCCAAAGATGACGA
TGAGACCGGGGCGGAAGACAAGAACCCGGCAGACTCCGAGGAACTGGGAT
CGAATGCACAGGACAAGATGTCGCTCATGCTAGTCAACGTTTTGTCGTGG
CTGCGTCTTCCGGCAGGGTCCAGGTAAGGCACTTGCCGAGCTAAAACACT
GGCAGCAGGAGTATCATGGGGGTGCAAATCCACAGATCGATGCTTCAAGC
ATAACACGTGGTAGATGTTGGCCTAAAATCGCCGGGCGAGACGTGGACAC
CCCAATAGTGCCGTGCTTTGCTTTGCGCTTGACTTCTGGTTGTGTGCCAC
AGCGTTCATCGGGTGGCGAACACCATGGCCAGGCCCCACCTGAACCGACG
AAAGGAATACTTGAGGTTGATCAACTCAAGGCATGATACCCTCAGTGTCT
TTCAATTGCTACCGAACGCCCCACCGCAAACACCCAGGGAAGGGATCACA
CTGAAAGGACTTCTGGGACACCAGTACTTCGCCCCGGTTCGGCACACGGA
CATTGAAAGCGAGATACCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11957:2..4520-

>mRNA_Ecto-sp13_S_contig11957.1668.1 ID=mRNA_Ecto-sp13_S_contig11957.1668.1|Name=mRNA_Ecto-sp13_S_contig11957.1668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11957:2..4520- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGCGAAATTAAGGGTGCAATCCATCAACTACCCGGGGACTCTGAA
CGCCTCAAGGAAGCATTCCGCCACCCACGGCTACGGGGGTGCCCAGGAAG
ACCCTTGGGGAGTCTCCCAGGGGCTGGCAGGCAGGGAGGCGATTTCTTGT
CGACGAGGACTTGCCAACCGTCCCAGCTCGAAAGAAGAGCTTCCTGTCAC
GGTGGTGGCCATGCCTAAGGTAGAGACGGGCTATTCGGCAAGAGAAAAGC
TGTGGAGAGCTTTCCTAGCCCACAGGCAGCTGGCCCTTGGCAGAGGTGCT
CTTGCATGCTTGGCGCAGTTGTCGGAACAGAGTACGTTTACGTTGGAGAG
GCGGATATCTACGGCCAATCTCATGATAGGCGAACAGGGATGCATGCTGC
GCTTGGGTGGGATTCGTTGGGGTCCCGAGATCCACGGAGTAGGACATGCG
ACGACGACAGCGCTGCGGCATAGAGAAACCGATCTTTGCCTCGGGCTCGC
AGAAACGCTCGAGGGACTTCTGGGGCTGGGACGCTCCAAAGATGACGATG
AGACCGGGGCGGAAGACAAGAACCCGGCAGACTCCGAGGAACTGGGATCG
AATGCACAGGACAAGATGTCGCTCATGCTAGTCAACGTTTTGTCGTGGCT
GCGTCTTCCGGCAGGGTCCAGGGAAGGGATCACACTGAAAGGACTTCTGG
GACACCAGTACTTCGCCCCGGTTCGGCACACGGACATTGAAAGCGAGATA
CCG
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