mRNA_Ecto-sp13_S_contig11952.1666.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Match: D7FX61_ECTSI (Elongation factor P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX61_ECTSI) HSP 1 Score: 419 bits (1078), Expect = 1.440e-143 Identity = 216/221 (97.74%), Postives = 218/221 (98.64%), Query Frame = 1
Query: 1 GSFAQQHQQQRQGVTRWTAAAGPRTARGGGVGALSMGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELTATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDTDSKKYMERAK 663
GSFAQQ QQQR GVTRWTAAAGPRTARGGGVGALSMGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDK+DLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMEL+ATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVD DSKKYMERAK
Sbjct: 37 GSFAQQQQQQR-GVTRWTAAAGPRTARGGGVGALSMGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKVDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELSATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDIDSKKYMERAK 256
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Match: A0A6H5KN57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN57_9PHAE) HSP 1 Score: 364 bits (935), Expect = 5.780e-123 Identity = 183/186 (98.39%), Postives = 186/186 (100.00%), Query Frame = 1
Query: 106 MGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELTATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDTDSKKYMERAK 663
MGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMEL+ATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVA+GA+INVPLFITTGEKIRVDTDSKKYMERAK
Sbjct: 1 MGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELSATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVASGAMINVPLFITTGEKIRVDTDSKKYMERAK 186
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Match: A0A836CK22_9STRA (Elongation factor P (EF-P) KOW-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK22_9STRA) HSP 1 Score: 235 bits (600), Expect = 2.080e-72 Identity = 107/186 (57.53%), Postives = 150/186 (80.65%), Query Frame = 1
Query: 106 MGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELTATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDTDSKKYMERAK 663
M ST+DFK G+TI++DG P ++ EFLHVKPGKG+AFVR+K+KNLITGN++EKTFRAGEP+ AQV++L LQ+TY +G + FMD+ ++EEV +A+ ++GDKA + EGM+L A + ++I+V++P+ M+L V +TDPG KGNTAQG +KPA + G ++ VPLFI GEKI+VDT+ +KYMER+K
Sbjct: 1 MASTSDFKTGLTIEVDGAPVRVQEFLHVKPGKGAAFVRSKLKNLITGNTVEKTFRAGEPITLAQVERLTLQFTYDDGTNFCFMDTTSFEEVQMAKSILGDKADWLQEGMQLEALQWTDRIIDVSIPRTMVLTVTQTDPGVKGNTAQGGSKPATLETGVVLQVPLFINEGEKIKVDTEERKYMERSK 186
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Match: K9YEZ9_HALP7 (Elongation factor P n=3 Tax=Cyanobacteria TaxID=1117 RepID=K9YEZ9_HALP7) HSP 1 Score: 217 bits (553), Expect = 2.180e-65 Identity = 102/184 (55.43%), Postives = 144/184 (78.26%), Query Frame = 1
Query: 106 MGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELTATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDTDSKKYMER 657
M S+ DF+ GMTI+++GN +++EFLHVKPGKGSAFVRTK+KN+ +GN +E+TFRAGE V QA ++K ++Q+TYKEGD Y FMD ++EEV I + +GD+A + EGME++A Y++G ++EV +P ++LEVVETDPG KG+TA G +KPA V GA + VPLFI+ GE+I++DT + Y+ R
Sbjct: 1 MISSNDFRTGMTIELEGNVWRVVEFLHVKPGKGSAFVRTKLKNVQSGNVVERTFRAGETVPQATLEKREMQHTYKEGDEYVFMDMESFEEVRIPPETIGDRAKYINEGMEISAVYWEGNILEVEVPNSVVLEVVETDPGVKGDTATGGSKPATVETGAQVMVPLFISVGERIKIDTRNDTYVGR 184
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Match: A0A7R9UCL6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL6_9STRA) HSP 1 Score: 218 bits (555), Expect = 4.140e-65 Identity = 106/188 (56.38%), Postives = 141/188 (75.00%), Query Frame = 1
Query: 103 SMGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKE--GDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELTATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDTDSKKYMERA 660
SM ST+DFKNG+T+++DG P KI+EF+HVKPGKG+AFVR+K+KNL+ G+ +EKT+RAGE VE AQV+K D+Q+TY + Y FMD A++EEV+ V+G KA F +GME+ + K+I+V LP+ M+ EVVETDPG KGNT QG TKPA + GA++ VPLF+ GE I+VDT KY+ RA
Sbjct: 38 SMASTSDFKNGLTLEVDGTPVKIVEFMHVKPGKGAAFVRSKLKNLMNGSVVEKTWRAGEKVELAQVEKFDMQFTYFDDSSSSYMFMDVASFEEVACDADVLGSKASFLKDGMEVAGIKWNEKIIDVELPQTMVYEVVETDPGVKGNTVQGGTKPATLDGGAVVAVPLFVEQGEMIKVDTKEGKYLSRA 225
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Match: A0A7R9YPI6_DIALT (Hypothetical protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YPI6_DIALT) HSP 1 Score: 214 bits (546), Expect = 3.570e-64 Identity = 109/188 (57.98%), Postives = 138/188 (73.40%), Query Frame = 1
Query: 97 ALSMGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELTATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDTDSKKYMERA 660
A+SM ++ DFK GMTI+ D P K++EFLHVKPGKGSAFVR+K+KNLITGN++EKT+RAGE V A+V+K D+QYTYKEGD Y FMD A++EE+ I K + D+ F E + G++I V LP QM L+V+ET PG KGNT QG KPA + GA+I VPLFI GE++RVDT KKY+ RA
Sbjct: 9 AVSMLTSNDFKVGMTIESDAVPYKVIEFLHVKPGKGSAFVRSKLKNLITGNTMEKTWRAGESVGAAEVEKFDVQYTYKEGDQYVFMDMASFEEMRIDAKAI-DQIDFLKESGSAQVAKWNGQIISVELPNQMNLKVIETMPGVKGNTVQGGQKPATLETGAVIQVPLFIEEGEEVRVDTIEKKYLSRA 195
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Match: A0A7J7IJD2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJD2_9RHOD) HSP 1 Score: 216 bits (549), Expect = 9.480e-64 Identity = 103/182 (56.59%), Postives = 137/182 (75.27%), Query Frame = 1
Query: 112 STADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELTATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDTDSKKYMER 657
S+ DF+ G+TI++DG+P K++E LHVKPGKG+AFVRTK+KNL+TGNS+E+TFRAGE V +AQV+K+++QYTY E Y FM+ T+EE I VGD A + G +++ T + GK IEV +P M LEVVETDPG +GNTAQG +KPAK+ G +I VPLFI GEK++VDT + Y+ R
Sbjct: 79 SSNDFRVGLTIEVDGSPFKVIEHLHVKPGKGAAFVRTKLKNLLTGNSMERTFRAGESVPEAQVEKVEMQYTYAEESDYVFMNMTTFEEERIPASTVGDTAKYLRTGQDVSVTKWNGKPIEVEVPTTMTLEVVETDPGVRGNTAQGGSKPAKLETGVVIQVPLFINVGEKVKVDTRTGTYLSR 260
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Match: A0A7V5I583_9BACT (Elongation factor P n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I583_9BACT) HSP 1 Score: 212 bits (540), Expect = 1.900e-63 Identity = 100/179 (55.87%), Postives = 136/179 (75.98%), Query Frame = 1
Query: 121 DFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELTATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDTDSKKYMER 657
DF+ G+TI++DG+P K++E LHVKPGKG+AFVRTK+KNL+TGN++E+TFRAGE V +AQV+K + QYTY + Y FM+ AT+EE + +VVGD A + G +++ T + GK IEV +P + LEVVETDPG +GNTAQG +KPAK+ G ++ VPLFI GEKI+VDT + Y+ R
Sbjct: 7 DFRVGLTIEVDGSPFKVIEHLHVKPGKGAAFVRTKLKNLLTGNTMERTFRAGETVPEAQVEKFEAQYTYPAENEYVFMNMATFEEEHVPNEVVGDTAKYLRVGQDVSVTKWNGKPIEVEVPATLTLEVVETDPGVRGNTAQGGSKPAKLETGVVVQVPLFIEVGEKIKVDTRTGSYLSR 185
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Match: EFP_SYNE7 (Elongation factor P n=4 Tax=Synechococcus elongatus TaxID=32046 RepID=EFP_SYNE7) HSP 1 Score: 212 bits (539), Expect = 2.590e-63 Identity = 105/184 (57.07%), Postives = 134/184 (72.83%), Query Frame = 1
Query: 106 MGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELTATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDTDSKKYMER 657
M S+ DF+ G TI+IDG +++EFLHVKPGKGSAFVRTK+KN TGN +EKTFRAGE V QA ++K LQYTYK+GD + FMD TYEE + +GD+ + EGME + G+VIEV LP ++LEV+ETDPG KG+TA G TKPAKV GA + VPLFI+ GE+I++DT + Y+ R
Sbjct: 1 MISSNDFRTGTTIEIDGAVWRVVEFLHVKPGKGSAFVRTKLKNAKTGNVVEKTFRAGETVPQAVLEKSTLQYTYKDGDDFVFMDMETYEEGRLTAATIGDRVKYLKEGMEANVITWNGQVIEVELPNSVVLEVIETDPGVKGDTATGGTKPAKVETGAQVMVPLFISVGERIKIDTRNDSYLGR 184
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Match: UPI00055CAF5D (elongation factor P n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00055CAF5D) HSP 1 Score: 211 bits (537), Expect = 5.330e-63 Identity = 102/184 (55.43%), Postives = 140/184 (76.09%), Query Frame = 1
Query: 106 MGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELTATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDTDSKKYMER 657
M S+ DF+ G+TI++DG+ +++EFLHVKPGKGSAFVRTK+KN+ TGNS+E+TFRAGE V QA ++K +Q+TYKEGD Y FMD TYEE ++E+ +GD+ + E ME+ +++ +V+EV LP +ILE+ +TDPG KG+TA G TKPA V +GA + VPLFI+ GEKI+VDT Y+ R
Sbjct: 1 MISSNDFRTGVTIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNVQTGNSVERTFRAGETVPQANLEKRTMQHTYKEGDQYVFMDMETYEETRMSEEQMGDRVQYLKEEMEVNVIFWEDQVLEVELPTSVILEITDTDPGVKGDTATGGTKPAIVESGAQVMVPLFISIGEKIKVDTRDGSYLGR 184 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11952.1666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11952.1666.1 >prot_Ecto-sp13_S_contig11952.1666.1 ID=prot_Ecto-sp13_S_contig11952.1666.1|Name=mRNA_Ecto-sp13_S_contig11952.1666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp MGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLback to top mRNA from alignment at Ecto-sp13_S_contig11952:718..5007- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11952.1666.1 ID=mRNA_Ecto-sp13_S_contig11952.1666.1|Name=mRNA_Ecto-sp13_S_contig11952.1666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11952:718..5007- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11952:718..5007- >mRNA_Ecto-sp13_S_contig11952.1666.1 ID=mRNA_Ecto-sp13_S_contig11952.1666.1|Name=mRNA_Ecto-sp13_S_contig11952.1666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11952:718..5007- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |