mRNA_Ecto-sp13_S_contig11951.1665.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11951.1665.1
Unique NamemRNA_Ecto-sp13_S_contig11951.1665.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11951.1665.1 vs. uniprot
Match: A0A6H5JNW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW7_9PHAE)

HSP 1 Score: 460 bits (1183), Expect = 3.840e-161
Identity = 265/305 (86.89%), Postives = 270/305 (88.52%), Query Frame = 1 
Query:    1 MASTEPPVFGPVGKEGDVDGFAIAAIDWEAGVLDTLEAKL-RLLCAAVEEAPTEETTAGATAATPAETERAQLMEELDRLGEEKEQLREKKLALLRQQQSPKSSGT-TDCNQLVEEDGLHNNPSLQNGVSTEISGGPRVVMDYLRFPAAGVEAEASTFVLPDPPSPCAAAVGAVVLESLMTSRPSMDSLPGLISPSEEEMLAAFSYDDFSPSPYTTSYPPASPPSPAHADDAAEAGEDPWPDRDGDGMDSPPLKADTTSVDAATEAGSSFSSSSASDNDLDHPLPASRLPPSPASARESSPDETV 909
            MAS EPP+FGPVGKEGD+DGFA+AAIDWEAGVLDTLEAKL RLL AA EEAPTEETTAGATAATPAE ERA LMEELDRLGEEKE+LREKKLALLRQQQSPKSSG       L  ED       L  GVSTE SGGPRVV+DYLRFPAAGVEAEASTFVLPDPPSPCAAAVGAVVLESLM SRPSMDSLPGLISPSEEEMLAAFSYDDFSPSPYTTS PPASPPSPAHADD AEAGEDPWPDRDGDGMDSPPLKADTTSVDAATEAGSS SSSS SDNDLDH LPA  LPPSPASARE SPDE V
Sbjct:    1 MASKEPPLFGPVGKEGDIDGFAMAAIDWEAGVLDTLEAKLKRLLPAAREEAPTEETTAGATAATPAEAERAHLMEELDRLGEEKEKLREKKLALLRQQQSPKSSGDGVAVEDLTIEDVEEITMRLDEGVSTESSGGPRVVVDYLRFPAAGVEAEASTFVLPDPPSPCAAAVGAVVLESLMISRPSMDSLPGLISPSEEEMLAAFSYDDFSPSPYTTSSPPASPPSPAHADDTAEAGEDPWPDRDGDGMDSPPLKADTTSVDAATEAGSSISSSSVSDNDLDHVLPAPCLPPSPASAREVSPDEAV 305
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BLAST of mRNA_Ecto-sp13_S_contig11951.1665.1 vs. uniprot
Match: D7FUG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUG2_ECTSI)

HSP 1 Score: 457 bits (1176), Expect = 3.600e-160
Identity = 263/307 (85.67%), Postives = 271/307 (88.27%), Query Frame = 1 
Query:    1 MASTEPPVFGPVGKEGDVDGFAIAAIDWEAGVLDTLEAKLRLLCAAV--EEAPTEETTAGATAATPAETERAQLMEELDRLGEEKEQLREKKLALLRQQQSPKSSGTTDCNQ--LVEEDGLHNNPSLQNGVSTEISGGPRVVMDYLRFPAAGVEAEASTFVLPDPPSPCAAAVGAVVLESLMTSRPSMDSLPGLISPSEEEMLAAFSYDDFSPSPYTTSYPPASPPSPAHADDAAEAGEDPWPDRDGDGMDSPPLKADTTSVDAATEAGSSFSSSSASDNDLDHPLPASRLPPSPASARESSPDETV 909
            MASTEPPVFGPVGKEGDVDGFAIAAIDWEAGVLDTLEAKL+ L  A   EEAP EET AGATAATPAETERAQLMEE+DRLGEEKEQLREKKLALLRQQQSPKSSG     +   +E+ G  N   L  GVSTE SG PRVV+DYLRFPAAGVEAEASTFVLPDPPSPCAAAVGA VLESLMTSRPSMDSLPGLISPSEEEMLAAFSYDDFSPSPYTTS PPASPPSPAHADDAAEAGEDPWPD DG+GMDSPPLK DTTSVDAATEAGSS SSSS SDN+LDH LPA  LPPSPASAR SSPDETV
Sbjct:    1 MASTEPPVFGPVGKEGDVDGFAIAAIDWEAGVLDTLEAKLKRLLPAAGGEEAPIEETIAGATAATPAETERAQLMEEIDRLGEEKEQLREKKLALLRQQQSPKSSGAGVAVEDLTIEDAGDENKMRLDEGVSTESSGEPRVVVDYLRFPAAGVEAEASTFVLPDPPSPCAAAVGAAVLESLMTSRPSMDSLPGLISPSEEEMLAAFSYDDFSPSPYTTSSPPASPPSPAHADDAAEAGEDPWPDCDGNGMDSPPLKGDTTSVDAATEAGSSISSSSVSDNELDHVLPAFGLPPSPASARGSSPDETV 307
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11951.1665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNW7_9PHAE3.840e-16186.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUG2_ECTSI3.600e-16085.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11951contigEcto-sp13_S_contig11951:664..3293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size909
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_000290.1
Cds size909
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.2216296-CDS-Ecto-sp13_S_contig11951:663..9731681462633.2216296-CDS-Ecto-sp13_S_contig11951:663..973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11951 664..973 +
1681462633.231629-CDS-Ecto-sp13_S_contig11951:1897..19621681462633.231629-CDS-Ecto-sp13_S_contig11951:1897..1962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11951 1898..1962 +
1681462633.2415702-CDS-Ecto-sp13_S_contig11951:2759..32931681462633.2415702-CDS-Ecto-sp13_S_contig11951:2759..3293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11951 2760..3293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11951.1665.1prot_Ecto-sp13_S_contig11951.1665.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11951 664..3293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11951.1665.1

>prot_Ecto-sp13_S_contig11951.1665.1 ID=prot_Ecto-sp13_S_contig11951.1665.1|Name=mRNA_Ecto-sp13_S_contig11951.1665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
MASTEPPVFGPVGKEGDVDGFAIAAIDWEAGVLDTLEAKLRLLCAAVEEA
PTEETTAGATAATPAETERAQLMEELDRLGEEKEQLREKKLALLRQQQSP
KSSGTTDCNQLVEEDGLHNNPSLQNGVSTEISGGPRVVMDYLRFPAAGVE
AEASTFVLPDPPSPCAAAVGAVVLESLMTSRPSMDSLPGLISPSEEEMLA
AFSYDDFSPSPYTTSYPPASPPSPAHADDAAEAGEDPWPDRDGDGMDSPP
LKADTTSVDAATEAGSSFSSSSASDNDLDHPLPASRLPPSPASARESSPD
ETV
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mRNA from alignment at Ecto-sp13_S_contig11951:664..3293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11951.1665.1 ID=mRNA_Ecto-sp13_S_contig11951.1665.1|Name=mRNA_Ecto-sp13_S_contig11951.1665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11951:664..3293+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCGACAGAACCGCCAGTGTTTGGCCCAGTCGGTAAGGAGGGAGA
TGTCGATGGCTTCGCCATAGCTGCAATCGATTGGGAGGCGGGCGTGTTGG
ACACTCTAGAAGCGAAGCTGCGATTGCTTTGCGCAGCAGTAGAAGAAGCG
CCCACAGAAGAAACCACCGCCGGGGCAACCGCCGCCACCCCCGCGGAGAC
AGAGAGAGCGCAGCTCATGGAAGAGCTCGATAGGCTCGGCGAGGAAAAGG
AGCAGCTCAGGGAGAAGAAGCTCGCCCTTCTGCGGCAGCAGCAATCTCCA
AAGAGCTCAGGTGCTTAGCATGTGTTGCCATGGACCAAATTCGTTCGGTC
GTTGGTGGGTGGGCTTTGCTTCCACCAAGCCGTACATACCGGTCGGCAAC
ACGTTGAGTTCCTTTTTCTCTGTCCCGTTCACGGCTGGTTTTGTCAGCGA
AAACCGACCACACCCCATCCACCTCTGCCCTTCGCGAAAACCAGATGCAG
AGAGTAAGCGTTGCCGTTGGCCCACAAAAAATCCGAAGGGCGATGACCCG
TGAGATGCGGTGGGACGGAAGAGACAGGCCTTCTCTTTGCTCGCTGCCCT
CGTTGCACGTGGCCGTTGAGTGTTGCGTCGTTGGGTGCCGCTGTCGTCGG
TGTTACTATCAGCCAATCAGCTTGTAGGAAATCGTGAGGCCGGCATAGGT
GATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGCACACGAATACACTCAACAGTCG
GGGGGGTCGACTGCAAATATTCACCTCGTACGAGGCACCACCGACTGCAA
TCAGCTTGTAGAGGAAGATGGACTGCACAACAATCCGTCCTTACAAAATG
TGCCACAGCGACGCCCTCCCGGCCAAAGGCTCTCCACTGCAGCTAGTCTA
GCAGACGAAACCGAGCCTGCACCTGATTGGAGGGTGTTTTTTTTTTTTCT
CATCAGTTTGACCACAACGAATCCATCTCTATCGAAGGAAAGAGCCTAAG
ATATGTAGATTGCCAATGAATCCAAGGAGTCAGCGAAGTTCTGTTTTTCC
ACGATTTCCCGCATCTGAAGCTAATCTTGTACTGTAGTAGAGGGAAAGTC
AGAGCTCGGACCAGACAATCAAGGTCACGTAGCACACCGTAGATCGAGCC
CCGAAGTGACCGAAGAAGGCTATCTCATGTATGCACATGCATACGTTGTT
GAAATGCATCTTGCAGGGATCACGTTCTGTTCGCGAAATCGTCGTCAGAA
GTCTGTATCTTTCCCTGTTGGTCCTGCGAGAACCCAAAGGAAACTGGATA
TGTCTCCCTCCTACATGTTGCATATATCACTGCTGTGAACGCGTGAAGTA
TTTAGGACGTGAGCGCGCTCGATAAAGGAACAAAAACAACCTCCCGTCAC
CCTGTTCTCAACAAATATACTTCGGTGAGGCTGTTTAGCATCAACCGTGG
CACACACTGCTAGTGACCTCTCTCGCCCCCGCTACTGTTTCTTTGTACTG
CAGCACAAACACCCCGACCCGCTTAAAAGGGCCAGCATCGACCGCCATAG
AATGCTGTGCATGCCTACATCGCTCTACATTCACACCGAAACCCGTTCCG
ACATGCGCCGTCACCCCTTCCCTATCCGCCCCCCCAAAAATTTTAGGGTG
TTTCGACCGAGATTAGCGGAGGGCCGAGAGTGGTCATGGACTATCTCCGC
TTTCCGGCGGCAGGGGTGGAGGCGGAGGCGTCGACGTTCGTGCTGCCGGA
TCCCCCGTCCCCGTGCGCGGCGGCGGTGGGGGCGGTGGTGCTTGAATCTT
TGATGACTTCTCGGCCCTCGATGGACTCCCTCCCCGGGCTGATCTCGCCG
TCGGAAGAAGAGATGCTCGCCGCGTTCTCGTACGACGACTTCTCCCCCTC
CCCGTACACCACGAGTTATCCCCCGGCGTCGCCCCCTTCCCCTGCCCACG
CCGATGACGCCGCAGAAGCAGGCGAAGACCCGTGGCCAGATCGTGACGGC
GATGGCATGGACTCGCCACCTCTGAAAGCGGACACGACGTCGGTGGACGC
TGCTACGGAAGCAGGATCTTCGTTCTCGTCGTCCTCAGCGTCCGACAACG
ACTTGGACCACCCACTGCCCGCCTCCCGCCTTCCCCCGTCACCGGCTTCT
GCAAGGGAATCCTCTCCAGATGAAACAGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11951:664..3293+

>mRNA_Ecto-sp13_S_contig11951.1665.1 ID=mRNA_Ecto-sp13_S_contig11951.1665.1|Name=mRNA_Ecto-sp13_S_contig11951.1665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11951:664..3293+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCGACAGAACCGCCAGTGTTTGGCCCAGTCGGTAAGGAGGGAGA
TGTCGATGGCTTCGCCATAGCTGCAATCGATTGGGAGGCGGGCGTGTTGG
ACACTCTAGAAGCGAAGCTGCGATTGCTTTGCGCAGCAGTAGAAGAAGCG
CCCACAGAAGAAACCACCGCCGGGGCAACCGCCGCCACCCCCGCGGAGAC
AGAGAGAGCGCAGCTCATGGAAGAGCTCGATAGGCTCGGCGAGGAAAAGG
AGCAGCTCAGGGAGAAGAAGCTCGCCCTTCTGCGGCAGCAGCAATCTCCA
AAGAGCTCAGGCACCACCGACTGCAATCAGCTTGTAGAGGAAGATGGACT
GCACAACAATCCGTCCTTACAAAATGGTGTTTCGACCGAGATTAGCGGAG
GGCCGAGAGTGGTCATGGACTATCTCCGCTTTCCGGCGGCAGGGGTGGAG
GCGGAGGCGTCGACGTTCGTGCTGCCGGATCCCCCGTCCCCGTGCGCGGC
GGCGGTGGGGGCGGTGGTGCTTGAATCTTTGATGACTTCTCGGCCCTCGA
TGGACTCCCTCCCCGGGCTGATCTCGCCGTCGGAAGAAGAGATGCTCGCC
GCGTTCTCGTACGACGACTTCTCCCCCTCCCCGTACACCACGAGTTATCC
CCCGGCGTCGCCCCCTTCCCCTGCCCACGCCGATGACGCCGCAGAAGCAG
GCGAAGACCCGTGGCCAGATCGTGACGGCGATGGCATGGACTCGCCACCT
CTGAAAGCGGACACGACGTCGGTGGACGCTGCTACGGAAGCAGGATCTTC
GTTCTCGTCGTCCTCAGCGTCCGACAACGACTTGGACCACCCACTGCCCG
CCTCCCGCCTTCCCCCGTCACCGGCTTCTGCAAGGGAATCCTCTCCAGAT
GAAACAGTT
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