mRNA_Ecto-sp13_S_contig11950.1664.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11950.1664.1
Unique NamemRNA_Ecto-sp13_S_contig11950.1664.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Match: A0A6H5L4Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y0_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 4.160e-95
Identity = 174/191 (91.10%), Postives = 178/191 (93.19%), Query Frame = 1
Query:    7 RCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFTPPRGWFAGAPASTTPEAQERTGSHEDGNGDQQTTXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVWWTRRFVREYLPPVSLDNPSLRQFLAQHGLA 579
            +CKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSRED+TRALVGSLLDYDPFSDGSGIDGEEDGG RPLFIKADLYLYEFTPPRGWFAG PASTTPEAQER+GSHEDG+GDQQTT     XXXXXXXXXXXXXXXXXXX   E GVWWTRRFVREYLPPV LDNPSLRQFL QHGLA
Sbjct:  619 KCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDKTRALVGSLLDYDPFSDGSGIDGEEDGGRRPLFIKADLYLYEFTPPRGWFAGTPASTTPEAQERSGSHEDGDGDQQTTRVRETXXXXXXXXXXXXXXXXXXXGR-ERGVWWTRRFVREYLPPVGLDNPSLRQFLLQHGLA 808          
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Match: D7G290_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G290_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 4.120e-90
Identity = 177/204 (86.76%), Postives = 180/204 (88.24%), Query Frame = 1
Query:    1 GFRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFTPPRGWFAGAPASTTPEAQERTGSHEDGNGDQQTTXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------EEGVWWTRRFVREYLPPVSLDNPSLRQFLAQHGLA 579
            GFRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSR+DETR LVGSLLDYDPF+D SGIDGE+ GGGRPLFIKADLYLYEFTPPRGWFAG PASTTPEAQERTG HEDGNGD    XXXXXXXXXXXXXXXXXXXXXXXXXXX           E G WWTRRFVREYLPPV  DNPSLRQFLAQHGLA
Sbjct:  566 GFRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSRKDETRTLVGSLLDYDPFADDSGIDGEDGGGGRPLFIKADLYLYEFTPPRGWFAGTPASTTPEAQERTGGHEDGNGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRETGAWWTRRFVREYLPPVGPDNPSLRQFLAQHGLA 769          
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Match: A0A7D9IVA0_PARCT (Lipase maturation factor n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IVA0_PARCT)

HSP 1 Score: 109 bits (273), Expect = 3.610e-24
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    4 FRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFT 291
            F+CKPG+V RRPC+ISP HYRLDW +WFAAFQ Y+HNPWLV+L +KLL  +        SL+ ++PF +G            P +I+A+ YLYEFT
Sbjct:   39 FKCKPGNVKRRPCLISPYHYRLDWLMWFAAFQNYQHNPWLVHLTAKLLVNDPGAT----SLIAHNPFENGP----------PPRYIRAEHYLYEFT 120          
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Match: A0A7S2S376_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S376_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.860e-23
Identity = 65/192 (33.85%), Postives = 88/192 (45.83%), Query Frame = 1
Query:    4 FRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFTPPRGWFAGAPASTTPEAQERTGSHEDGNGDQQTTXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVWWTRRFVREYLPPVSLDNPSLRQFLAQHGLA 579
            F+CKPG+VDR PC+ISP H+RLDW +WFA FQ+Y+ NPWL++L+ K+L+ + E  A    LL  DPF           G   P F++A  Y Y F P R             A + T    D + D+                                G WW R F    +PP+   + S+R FL  +GLA
Sbjct:   80 FQCKPGNVDRMPCLISPFHFRLDWLMWFAGFQSYQSNPWLIHLMEKILTGKPEGTA----LLAEDPFQ----------GQDPPTFVRAVRYRYTFAPRRA------------AVKATNGRNDISRDR--------------------------------GRWWEREFKGVLVPPIGHGDSSVRMFLQHNGLA 213          
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Match: A0A150QYQ6_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150QYQ6_SORCE)

HSP 1 Score: 114 bits (285), Expect = 7.040e-23
Identity = 71/188 (37.77%), Postives = 88/188 (46.81%), Query Frame = 1
Query:   10 CKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFTPPRGWFAGAPASTTPEAQERTGSHEDGNGDQQTTXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVWWTRRFVREYLPPVSLDNPSLRQFLAQHG 573
            CKPGDV RRPC+I+P HYRLDWQ+WFAAF +Y   PWLV+LV KLLS +   + L+ S    +PF D             P +I+A LY Y FT                   R G   DG+                                   G WW R  V EYLPP+S+D+PSL +FLA +G
Sbjct:  429 CKPGDVRRRPCLITPYHYRLDWQIWFAAFGSYESEPWLVHLVYKLLSGDAGAQRLLAS----NPFPDAP-----------PRYIRAGLYRYSFT-------------------RIG---DGS-----------------------------------GAWWRRVRVAEYLPPLSVDDPSLLRFLAAYG 544          
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Match: A0A3L8S0T7_CHLGU (Lipase maturation factor n=1 Tax=Chloebia gouldiae TaxID=44316 RepID=A0A3L8S0T7_CHLGU)

HSP 1 Score: 105 bits (262), Expect = 1.470e-22
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    4 FRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFTPPRGWFAG 315
            F+CKPGD+ RRPC ISP HYRLDW +WFAAFQTY  N W+++L  KLL++E+ET     SLL  +PF+          G   P +I+ + + Y+F+ P G  AG
Sbjct:   49 FKCKPGDLRRRPCFISPYHYRLDWLMWFAAFQTYEQNEWIIHLAGKLLAQEEETL----SLLATNPFA----------GRDPPRWIRGEHFKYKFSQPGGKHAG 138          
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Match: A0A8B7YM60_ACAPL (Lipase maturation factor n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YM60_ACAPL)

HSP 1 Score: 113 bits (282), Expect = 1.930e-22
Identity = 63/179 (35.20%), Postives = 85/179 (47.49%), Query Frame = 1
Query:    4 FRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFTPPRGWFAGAPASTTPEAQERTGSHEDGNGDQQTTXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVWWTRRFVREYLPPVSLDN 540
            F+CKPG+V RRPC+ISP HYRLDW +WFAAFQ+Y  NPWLV+L  K L  +      V SL+ ++PF DG            P F++A  Y Y++T                   + GS +                                    +EG WW+R+F+R YLPPVSL++
Sbjct:  450 FKCKPGNVTRRPCLISPYHYRLDWLMWFAAFQSYESNPWLVHLAGKFLYNDKG----VTSLVAHNPFKDGD----------PPRFVRALHYRYQYT-------------------KIGSQQS-----------------------------------QEGAWWSRKFLRSYLPPVSLES 560          
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Match: A0A1G1K432_9BACT (Uncharacterized protein n=2 Tax=unclassified Candidatus Omnitrophica TaxID=1047005 RepID=A0A1G1K432_9BACT)

HSP 1 Score: 112 bits (279), Expect = 2.230e-22
Identity = 70/188 (37.23%), Postives = 90/188 (47.87%), Query Frame = 1
Query:    4 FRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFTPPRGWFAGAPASTTPEAQERTGSHEDGNGDQQTTXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVWWTRRFVREYLPPVSLDNPSLRQFLAQ 567
            F+ KPGD  R PC++SP H++LDWQ+WFAA   YR++PW++NL +KLL  +   RA V  LL  +PFSD             P FI+A+LY Y FT       GA      E + RTG+                                          WW RR V EYLPP+SLDNPS ++ L Q
Sbjct:  367 FKGKPGDPKRPPCIVSPYHWKLDWQMWFAAMSDYRYHPWILNLTAKLLKGD---RA-VSKLLAENPFSDSP-----------PKFIRAELYEYHFT-------GA------EEKTRTGN------------------------------------------WWWRRRVGEYLPPLSLDNPSFQEALRQ 484          
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Match: A0A534X7S5_9DELT (Lipase maturation factor family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534X7S5_9DELT)

HSP 1 Score: 112 bits (279), Expect = 2.750e-22
Identity = 69/190 (36.32%), Postives = 85/190 (44.74%), Query Frame = 1
Query:    4 FRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFTPPRGWFAGAPASTTPEAQERTGSHEDGNGDQQTTXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVWWTRRFVREYLPPVSLDNPSLRQFLAQHG 573
            F+CKPGDV RRPCV++P   R+DWQ+WFAA  T    PW ++LV KLL   D+  AL  SLL  +PF D             P  ++A LY YEF PP     G P+                                                    G WW R  VRE+LPP+S D+P LR+FLA HG
Sbjct:  387 FKCKPGDVMRRPCVVAPYQERIDWQIWFAAMSTPERYPWTLHLVWKLL--HDDPGAL--SLLATNPFPDAP-----------PRHVRARLYRYEFAPP-----GDPS----------------------------------------------------GAWWRRTLVREWLPPLSADDPHLRRFLAAHG 504          
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Match: A0A7J7KAU3_BUGNE (Lipase maturation factor n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KAU3_BUGNE)

HSP 1 Score: 103 bits (258), Expect = 4.320e-22
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    4 FRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFT 291
            F+CKPG+V +RPC+ISP HYRLDW +WFAAFQ Y+HNPWL++ V+KLL+ +     L   L+D +PF+          G   P +I+ + Y YE++
Sbjct:   48 FKCKPGNVTKRPCLISPYHYRLDWLMWFAAFQNYQHNPWLIHFVAKLLANDQ----LAVELIDVNPFA----------GKSPPKYIRLEHYRYEYS 129          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11950.1664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y0_9PHAE4.160e-9591.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G290_ECTSI4.120e-9086.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7D9IVA0_PARCT3.610e-2452.08Lipase maturation factor n=1 Tax=Paramuricea clava... [more]
A0A7S2S376_9STRA1.860e-2333.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A150QYQ6_SORCE7.040e-2337.77Uncharacterized protein n=1 Tax=Sorangium cellulos... [more]
A0A3L8S0T7_CHLGU1.470e-2248.08Lipase maturation factor n=1 Tax=Chloebia gouldiae... [more]
A0A8B7YM60_ACAPL1.930e-2235.20Lipase maturation factor n=1 Tax=Acanthaster planc... [more]
A0A1G1K432_9BACT2.230e-2237.23Uncharacterized protein n=2 Tax=unclassified Candi... [more]
A0A534X7S5_9DELT2.750e-2236.32Lipase maturation factor family protein n=1 Tax=De... [more]
A0A7J7KAU3_BUGNE4.320e-2246.88Lipase maturation factor n=1 Tax=Bugula neritina T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11950contigEcto-sp13_S_contig11950:1990..5198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score310.5
Seed ortholog evalue5.7e-82
Seed eggNOG ortholog2880.D7G290
Preferred nameLMF1
Model size2101
Hectar predicted targeting categoryother localisation
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006807,GO:0006810,GO:0006888,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009306,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0031323,GO:0031984,GO:0032501,GO:0032940,GO:0033036,GO:0033578,GO:0034381,GO:0034382,GO:0034645,GO:0036211,GO:0042175,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046486,GO:0046903,GO:0046907,GO:0048193,GO:0050789,GO:0050790,GO:0050794,GO:0051004,GO:0051006,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051604,GO:0051641,GO:0051649,GO:0060191,GO:0060193,GO:0061365,GO:0062012,GO:0065007,GO:0065009,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071830,GO:0080090,GO:0090181,GO:0090207,GO:0097006,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons3
EggNOG free text desc.protein glycosylation in Golgi
EggNOG OGs28KNS@1,2QT4H@2759
Cds size582
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.1620648-UTR-Ecto-sp13_S_contig11950:1989..35081681462633.1620648-UTR-Ecto-sp13_S_contig11950:1989..3508Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11950 1990..3508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.1763976-CDS-Ecto-sp13_S_contig11950:3508..38061681462633.1763976-CDS-Ecto-sp13_S_contig11950:3508..3806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11950 3509..3806 -
1681462633.1846278-CDS-Ecto-sp13_S_contig11950:4374..45831681462633.1846278-CDS-Ecto-sp13_S_contig11950:4374..4583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11950 4375..4583 -
1681462633.1932871-CDS-Ecto-sp13_S_contig11950:5123..51981681462633.1932871-CDS-Ecto-sp13_S_contig11950:5123..5198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11950 5124..5198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11950.1664.1prot_Ecto-sp13_S_contig11950.1664.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11950 3509..5198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11950.1664.1

>prot_Ecto-sp13_S_contig11950.1664.1 ID=prot_Ecto-sp13_S_contig11950.1664.1|Name=mRNA_Ecto-sp13_S_contig11950.1664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
GFRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLS
REDETRALVGSLLDYDPFSDGSGIDGEEDGGGRPLFIKADLYLYEFTPPR
GWFAGAPASTTPEAQERTGSHEDGNGDQQTTRAGETTSSSSSSSSADLGG
GGDEDDGREEGVWWTRRFVREYLPPVSLDNPSLRQFLAQHGLA*
back to top

mRNA from alignment at Ecto-sp13_S_contig11950:1990..5198-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11950.1664.1 ID=mRNA_Ecto-sp13_S_contig11950.1664.1|Name=mRNA_Ecto-sp13_S_contig11950.1664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11950:1990..5198- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTTCAGGTGCAAACCTGGGGATGTTGACCGGCGGCCGTGCGTAATCAG CCCGCTCCACTACCGCCTTGACTGGGTGAGAAGGAGAACACACTTGCTGT TGTCCGTAAAAGGGGTCCTTGAAGGCCGTCTTGCTCCGGAAACGCCGTTA GCATGGGAGAAACCCGCAGTCCGCATCGCCCGCCCAGACTTGTGCAGTTG TGGGTGAAGGCGGGGCATGACGGTGGTTCGTTTGCACCACGCCAAGGCAG AAGTGACGAACTCATGTGCAAGTGTACGGCATGCGTATAGATGGAGCTTG GCATACCCACCCATCCTCCCGTGGTCACTACGAAAGCATCACGTTATTAA GAGACTCGCGGGGGTGCCAAATACGTGGTGCGCAACACCCCCGCCCCAAA AAAAGTGAGGATCATGGACAAGCACTGCGCTCATCTTGGACTGTGCAATG CGCTCCCATTCACGACCCACTTATCCTCCCTCCCCCCGCCCGTCCTCTCT CGCCCGTCCGATTTCTCTGTTTTGTGCTGGTGGCTGTTGGATTCCTTCTT TCGACGGCGTCATTCAAAAATGCACACAAAACGCGGACGACCTGTTTAAA ATGTATTTGTGATAGCAAGTGTGGTTCGCGGCTTTCCAGACCTACAGACA CAACCCGTGGCTGGTAAACCTTGTGTCGAAGCTCTTGAGCAGAGAAGACG AGACCAGGGCTCTTGTGGGATCACTGCTGGACTACGACCCGTTCTCTGAC GGTTCGGGGATCGATGGCGAAGAAGACGGCGGCGGGCGTCCTCTGTTCAT CAAGGCGGATCTTTACCTGTACGAGTGAGTCATTTGGCTTGGTTGGCTGC TGCTGCTGCTCTCGTGTTGTGGTGTTGCTGCTTCGCTTCAGATCGCCGTC TTGTCTCTGCGGGTGATTTGTGAATTGCGCGCTGTAGTCGGCGCCGGAAG TGGCAGCTGTCTTCTCCCGTGTTCGTTACGTTTCTGTTTTTCCCTGGGTT CTCGTTGCAAACCTGGTTCTTCGGCAAGTACAGAGCTTGTAGCTTGGTCT CTGAAGCGGGGGCAAGGCTTCTGTACGATATGAACGAAGACACCACGATT GTGCTGTCGCATCGATGATTCGAGTGAGCACCCCACTGCGCCGAGATCAT GCATTATTTTCCGAGCTCCCCCGGTCCCAACAGATCGATGCCAATTTCAT ACGTTACCCTCGCAGGCCTGGTATGTATATATGTTTGATAGGATTCCTCC CATGTTTTGGCGGAAGAATACGAGTTGAAACGTGCCGCACACGGACCCCC CCCCTGCCCGTCCCCTCGAGGACGCGTTGTCTAACCGCTAAGGCATGCAA AACATTTCCCAACCCCCCACCCCCCACCCCGAAAAATATCAGGTTCACCC CTCCGCGGGGCTGGTTTGCCGGCGCGCCCGCCTCGACGACGCCAGAGGCC CAAGAAAGGACAGGCAGCCACGAAGACGGAAACGGCGACCAACAAACGAC TCGAGCGGGGGAGACAACCTCATCATCATCATCATCATCTTCCGCGGACT TGGGCGGTGGCGGCGACGAAGACGATGGGCGAGAGGAGGGCGTGTGGTGG ACTCGCCGCTTCGTGCGGGAGTACCTACCGCCAGTCAGCCTGGATAACCC CTCGCTGCGACAGTTCCTGGCGCAGCACGGCTTGGCGTAGTATGTATGTA TCGCGGATTGCTGAAACAGCTGCCTTACTGTTGGGTTGAAAGAGGGTAGG GAAAGTTTGTCGGTTTTGTTTTTCTATGTCTTGTCGTTTGTGTGCTGATC GGGCATGTGATGGTGATGTATTTAATTGTCTCTCTCTTGCTTGCGGTAGT CTTGTGCAGTCTTTCGGTGTTGATGATTCTCGTTGTTATGTTTGTCCGTA GTACCTGGCCGTGTAAGTATTTAACGTTTATAGGGATCGGCCCGCTTGGA GGAAAAATGTGCCTTTTCCCGAAAACGCAATGGATGAGTCTTCCACCCCG TGGCCCTGAAAGCCCCGTCTGGTACGTACTGCATATCTTGGTTCAGTCTC ATCTGGCAATGCTGCTGTGGGTGGGTATGCTGGCTGGCGCACATGGGTTG TTTCGCCCACCCCCCCTCGGACACAGACGTTACCCCCCACTTGCCAACCT CATGCTCTGTAAGGAGCCGTGCACGGTTCGGCGAAGGGTAATGCGATGCA CTGGGCTGTTGCGCTGGGTCGAAGAATAAACGACAAATGACGCGCCCATT CCCGCTTCACCACAATGGGAGAATACGGCAGGATATTTTCGATTCTTTCC AAGCTACGTTTGATCGAAGTTGTCCGGTTGCTGTGTGTTTTCTGGTCGAG TTTCGGCGTCGACGGTGCGCAAAGTGCATGGCGAGTGCAGGAGGCACAAG GGTCATCAGGGATAGCGGCGTGGGGGGGGCGGGCGAGTTCATCAAGCACC GTTGCGCCAACCGTGGCGGAGAGGGGATGACGATGTGGGCCTGCGATGCT GTTTTGTATATTCTTTTCCGCACCGATTTTTCGATCGCTGCTATCTTTGC GCGCGCCCTAAATCCGGTGGTGTTCGTGTGTACAGTGCAAGCGGCACCGA ATCGTGTGTACATGCCGCCTGCAGCGCGGGGAAGCTTGTAGGTACGAGGT GTTGTTGTCTTGGCGTAGTTACCCTCTGTTTCATAGTTTTCGCAAGAGGT GTTACTGGCATGCTCTAGATACGCCGGATAGCCAGTATCTCAATCAAGGG CTGGCGATCTACTAGACGGAGGAGAGTATCGCGAACACCTGTAATTCGAT CGAGAGAACTGCCTCGGACTCGAAGTTGCCGAAAACCCTCAGCAAGGGAA GATCGGTAGCGGGAGATCGGGACCATCCTAGAGGCGGGCGGCGAGCTTGT CTCCTTTGTTGGGCTTTCTGCCATTGCGTTGGGTCGTTCCTCAAGCAACC CCAGCCGCAATTGAAGAGAGGTTTTGTCTGGGTGTTCTTAGCTTGTCGTA TCTGGTGTGGTACTGCTTGCTTTGACCTTGGTCGATTGGTCGCTCTTGAA CATTTTGGTTTTCTCGCATTTGAGTGTGTCCCGGGATTCACATGCCAGCG GAGAGCTCTTATTCTTTGTTTCGGATTCGTTTTTGTGGGTGTTGTATCAT AGGTCTCGCGACCTTTGACAAATCCGATCGGTCCAAACGCAAGATGGAAC CACAGATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11950:1990..5198-

>mRNA_Ecto-sp13_S_contig11950.1664.1 ID=mRNA_Ecto-sp13_S_contig11950.1664.1|Name=mRNA_Ecto-sp13_S_contig11950.1664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11950:1990..5198- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTTCAGGTGCAAACCTGGGGATGTTGACCGGCGGCCGTGCGTAATCAG
CCCGCTCCACTACCGCCTTGACTGGCAAGTGTGGTTCGCGGCTTTCCAGA
CCTACAGACACAACCCGTGGCTGGTAAACCTTGTGTCGAAGCTCTTGAGC
AGAGAAGACGAGACCAGGGCTCTTGTGGGATCACTGCTGGACTACGACCC
GTTCTCTGACGGTTCGGGGATCGATGGCGAAGAAGACGGCGGCGGGCGTC
CTCTGTTCATCAAGGCGGATCTTTACCTGTACGAGTTCACCCCTCCGCGG
GGCTGGTTTGCCGGCGCGCCCGCCTCGACGACGCCAGAGGCCCAAGAAAG
GACAGGCAGCCACGAAGACGGAAACGGCGACCAACAAACGACTCGAGCGG
GGGAGACAACCTCATCATCATCATCATCATCTTCCGCGGACTTGGGCGGT
GGCGGCGACGAAGACGATGGGCGAGAGGAGGGCGTGTGGTGGACTCGCCG
CTTCGTGCGGGAGTACCTACCGCCAGTCAGCCTGGATAACCCCTCGCTGC
GACAGTTCCTGGCGCAGCACGGCTTGGCGTAG
back to top