mRNA_Ecto-sp13_S_contig1195.1662.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1195.1662.1 vs. uniprot
Match: D8LMH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH8_ECTSI) HSP 1 Score: 360 bits (923), Expect = 1.620e-110 Identity = 211/274 (77.01%), Postives = 217/274 (79.20%), Query Frame = 1
Query: 1642 MQARDPGSPPPIFLVITPSPRSAPKITTTTSSMRQSADRDAPDGEKIVAQEREPEPEERNTENEMDSHRRNEETGELLGERPQPTTSAAAGVVASAVSEVPHGGEVESPPEMSAGCGVQRAGGEGLEEXXXXXXXXXAEVLMSLWADQPGADITAKKADWNASAMVALQEVLPGGPEGLHTTAESFKPVPGGRLIMRVKHDLEPNGLPFTAKSAKIRLVKGGAPRVFRVLLQPGLGCCIGFFCTHEIETGDAGQVWEEAGYNQVTETGKYDGAR 2463
MQARDPGSPPPIFLVITPSPRSAPKITTT SSMRQSADRDAPDGEK +AQEREPEP + TENEMDSHRRNEETGELLGE P P AAAG VASAVSE+ GG VESPPEMSAGCGVQR+ GE LEEXXXXXXXXXAEVLM+LWADQPGADIT KKADWNASAMVALQEVLPG PEGLHT+AESFKPVPGGRLIMRVKHDLEPNGLPFTAKSAK VWEEAGYNQVTETGKYDGAR
Sbjct: 1 MQARDPGSPPPIFLVITPSPRSAPKITTTASSMRQSADRDAPDGEKTIAQEREPEPGDSKTENEMDSHRRNEETGELLGEGP-PXXXAAAGAVASAVSEMSRGGVVESPPEMSAGCGVQRSSGERLEEXXXXXXXXXAEVLMNLWADQPGADITTKKADWNASAMVALQEVLPGVPEGLHTSAESFKPVPGGRLIMRVKHDLEPNGLPFTAKSAK---------------------------------------VWEEAGYNQVTETGKYDGAR 234
BLAST of mRNA_Ecto-sp13_S_contig1195.1662.1 vs. uniprot
Match: D8LMH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH9_ECTSI) HSP 1 Score: 308 bits (788), Expect = 4.920e-92 Identity = 219/437 (50.11%), Postives = 230/437 (52.63%), Query Frame = 1
Query: 3391 MPSKDKGQGGSKDKAGAAAAAAEQAALAAPKIIIQAALDWEKMEVSPSLMSELPHYFQPTPEGMAHFCPPPLKISSRNSSRPSTSSEEETQHCDRGAGVGGDISRSSCTGDGETTISTPSISAATATETGALSLALVPGTELADRSPEDCMEKNNHKRNPEQPVRWWLEIVGAGEVEMVHDMSRVDSENKEVESWEAATPGRAGRSALLWTQRQASKVASLGNGDTSLTSSSSPENVETSSSTTSSNISVNPKPGEEGYEDWIKARAAAVGVPVALERERHASRLVLSAMPATGAIFTPEPIAPSSGSPSSVVASLSSPPVPSALINDEEMKKRADKRAALRQTTMEFEKKWEADRVEMVESGMQEMAMQLEYIRGREKNIKQARLPFLRDRETIVQDLIAKMRARKEALEEERAALEPTTKGGKTKQATKGKPAKK 4701
MPSKDKG+GGS DKA AAAAAEQAALAAPKIII+AALDWEKMEV EM HDMSRVDSENKEVESWEAATPGRA R+ALLWTQRQASKVASLGNGD SLTSSSSPENV TSS TTSSN+SVNPKP VPSALI+DEEMKKRAD+R ALRQTTMEFEKKWEADRV+MVE+GMQEMAMQLEYIRGRE++IKQARLPFLRDRETIVQDLIAKMRARKEA+EEERAALEPTTKGGKTKQATKGKP KK
Sbjct: 1 MPSKDKGKGGSTDKAAGAAAAAEQAALAAPKIIIEAALDWEKMEV-----------------------------------------------------------------------------------------------------------------------------------EMAHDMSRVDSENKEVESWEAATPGRADRAALLWTQRQASKVASLGNGDRSLTSSSSPENVATSSPTTSSNVSVNPKP------------------------------------------------------------------VPSALISDEEMKKRADERVALRQTTMEFEKKWEADRVDMVEAGMQEMAMQLEYIRGREESIKQARLPFLRDRETIVQDLIAKMRARKEAVEEERAALEPTTKGGKTKQATKGKPGKK 240
BLAST of mRNA_Ecto-sp13_S_contig1195.1662.1 vs. uniprot
Match: A0A7S2C202_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C202_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.830e-14 Identity = 101/443 (22.80%), Postives = 159/443 (35.89%), Query Frame = 1
Query: 2263 PFTAKSAKIRLVKGGAPRVFRVLLQPGLGCCIGFFCTHEIETGDAGQVWEEAGYNQVTETGKYDGARPGEWKVLFRRSFRVVGECPKPIGQPESSPVSAN-------PSDGGAGSGGESPESSTPETASEGVVHEENGADTGIIAATGDSTENSSCRGQQVEEAENL--CFVRAILHLPDEESRPSVRLAFVDEDTGREMLSPSLHTNAIPLAPNKCGYSVLAAACGRAKAIPKGAWRLQLLSDRPLLPLKRRGHGGGDGSDPLANSAKGVSVVSHADGGTGEEAAQGGSATTVVPCQKRVVYGGVYVPNTYLRLFKDVLKCA-SPLPFAVRLRCSLSGICLRLLFLDAATGETIRDIRGKHILQALAVTPPSATEIDPCSLSTNEMPSKDKGQGGSKDKAGAAAAAAEQAALAAPKIIIQAALDWEKMEVSPSLMSELPHYF 3561
PF+ +A++ A +++V L G + F + +E G VW++ G G YD W+V+FRR F P+P+ SP +A + A GGE +R + +PD ++ P +R+ +D DTG E + P L T +P A N+ GY+V+ A + G+W++ L+ PL GEEA G VPC + GVY PN Y RLF+DVL + A+RL + +RL DA + E + +RG+ + ++ PS G+ G ++++A LD E ME+ +L+S P+YF
Sbjct: 5 PFSTLTAELPPATDDAGHLYKVSLNAPAGAAVTFASSTALEVGTTADVWKKVGGYVAVAEGTYDAITADYWQVIFRRIFTA----PEPLEIKPESPAAAEGXXXXXXEGEEAAKEGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPSTFREFLIRLQVEVPDSDAAPFMRIVTIDNDTGVETVHPLLETAYMPWAKNEKGYTVMLVAYTPRYELAAGSWKMTALTSLPL---------------------------------EGEEAVAAGIEE--VPCGTTTQFSGVYTPNKYHRLFRDVLVSEDATYKLALRLALVDPSLYVRLEVFDAKSLELVCSVRGRKTVTLHSIVIPSGA-----------------GEEG---------------------LVVEATLDNEFMEMPAALVSRYPYYF 370 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1195.1662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1195.1662.1 >prot_Ecto-sp13_S_contig1195.1662.1 ID=prot_Ecto-sp13_S_contig1195.1662.1|Name=mRNA_Ecto-sp13_S_contig1195.1662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1568bp DPLELWPLLLSKALYKLYRLGGYERVKKITNASAAAAATTAAAAAANSVAback to top mRNA from alignment at Ecto-sp13_S_contig1195:155..18500- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1195.1662.1 ID=mRNA_Ecto-sp13_S_contig1195.1662.1|Name=mRNA_Ecto-sp13_S_contig1195.1662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=18346bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1195:155..18500- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1195:155..18500- >mRNA_Ecto-sp13_S_contig1195.1662.1 ID=mRNA_Ecto-sp13_S_contig1195.1662.1|Name=mRNA_Ecto-sp13_S_contig1195.1662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4704bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1195:155..18500- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |