mRNA_Ecto-sp13_S_contig11947.1661.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11947.1661.1
Unique NamemRNA_Ecto-sp13_S_contig11947.1661.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11947.1661.1 vs. uniprot
Match: D7FPV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV9_ECTSI)

HSP 1 Score: 712 bits (1838), Expect = 3.170e-254
Identity = 397/417 (95.20%), Postives = 402/417 (96.40%), Query Frame = 3 
Query:    3 YRPPVHVAPLDPELKRKRRRRDFYDLDTSHWKLTGAARPADSLPGAGGTELVNEREDWEAGEDLFQKLAGVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRARKKGETGRGGFYEGPEACREYLDLNHQLAQRLHDGGKESQTEEARKRYQRSLELDPVDHVNARRGLVRLLLDGGDADKARAVIDRFPDDRGCEMAWSLAAIEFVAWSVLQEDGSGEEVAGKALREACGANPFVAWNIAHREVFDEVVEHADEIESPPAGSVMEAFWYMVREGGLWESLEGASEWVADFLLQNEMLPPNPHQGDDGVVAGEDSKGDSGGNASDGGGREEKRVRQASADEAGDGEEEEGSTKTVLSEGDIDNDKSNAEMFANMFETAVGMAAELAEQQLGMEEGEGEEEASA*GRGIVGRVARG 1253
            YRPPVHVAPLDPELKRKRRRRDFYDLDTSHWKLTGAARPADSLPGAGGTELVNEREDWEAGEDLF+KLAG SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGR R+KGET  GGFYEGPEACREYLDLNHQLAQRLHDGGKESQTEEA KRYQRSLELDPVDHVNARRGLVRLLLDGGDADKARAVIDRFPDDRGCEMAWSLAAIEFVAWSVLQEDGSGEEVAGKALREACGANPFVAWNIAHREVFDEVVEHADEIESPPAGSVMEAFWYMVREGGLWESLEGASEWVADFLLQNEMLPPNPHQGDDGVVAGEDSK DS GN + GG REEKRVRQASADEAGDGEEEEGSTK VLSEGD+DND+SNA MFANMFETAVGMAAELAEQQLGMEEGEG EEASA GRGIVGR ARG
Sbjct:   70 YRPPVHVAPLDPELKRKRRRRDFYDLDTSHWKLTGAARPADSLPGAGGTELVNEREDWEAGEDLFEKLAGASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRGRQKGETSGGGFYEGPEACREYLDLNHQLAQRLHDGGKESQTEEALKRYQRSLELDPVDHVNARRGLVRLLLDGGDADKARAVIDRFPDDRGCEMAWSLAAIEFVAWSVLQEDGSGEEVAGKALREACGANPFVAWNIAHREVFDEVVEHADEIESPPAGSVMEAFWYMVREGGLWESLEGASEWVADFLLQNEMLPPNPHQGDDGVVAGEDSKDDSDGNTNGGGVREEKRVRQASADEAGDGEEEEGSTKMVLSEGDVDNDESNAGMFANMFETAVGMAAELAEQQLGMEEGEGGEEASAQGRGIVGRGARG 486
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BLAST of mRNA_Ecto-sp13_S_contig11947.1661.1 vs. uniprot
Match: A0A835Z3Z8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z8_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.830e-57
Identity = 128/306 (41.83%), Postives = 162/306 (52.94%), Query Frame = 3 
Query:    3 YRPPVHVAPLDPELKRKRRRRDFYDLDTSHWKLTGAARPADSLPGAGGTELVNEREDW-EAGEDLFQKLAGVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRARKKGETGRGGFYEGPEACREYLDLNHQLAQRLHDGGKESQTEEARKRYQRSLELDPVDHVNARRGLVRLLLDGGDADKARAVIDRFPD-DRGCEMAWSLAAIEFVAWSVLQEDGSGEEVAGKALREACGANPFVAWNIAHREVFDEVVEHADEIESPPAGSVMEAFWYMVREGGLWESLEGASEWVADFLLQNEMLPPNP 914
            Y PP    P  PE +R+RRR+DFYDLDTS W+L GAARPA  +    G E  N    W E GEDLF                                          KGE      +    ACR YLDL  QL       GK   +++A + ++R L LDP D V ARRGLVR L+D   AD+ARA+I+RF D D G  ++WSL AIE+++W +L EDGS E VA  AL  A  ANPFVAW +A  + F +V+E+ D+I  P   +V EAF Y   E  LW+ LEGA+EW+A +L+      P P
Sbjct:   58 YIPPKVTTPECPESRRRRRRQDFYDLDTSKWQLRGAARPAPII----GAEPENPH--WQEQGEDLFAL----------------------------------------KGEA-----FSSHPACRTYLDLKCQLGGACLAAGK---SKDAIQHFERCLVLDPSDAVRARRGLVRALMDRSLADRARALIERFRDTDTGAVLSWSLVAIEYISWRLLGEDGSDEAVAAAALEAAYAANPFVAWQLAFADEFADVLEYVDDIRDPAPSTVEEAFQYCSWEAALWQDLEGAAEWIAGWLIARAAPAPQP 309
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BLAST of mRNA_Ecto-sp13_S_contig11947.1661.1 vs. uniprot
Match: A0A7S4MTR9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MTR9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.890e-22
Identity = 69/187 (36.90%), Postives = 106/187 (56.68%), Query Frame = 3 
Query:  354 EGPEA--CREYLDLNHQLAQRLHDGGKESQTEEARKRYQRSLELDPVDHVN-----ARRGLVRLLLDGGDADKARAVIDRFPDDRGCEMAWSLAAIEFVAWSVLQEDGSGEEVAGKALREACGANPFVAWNIAHREVFDEVVEHADEIESPPAGSVMEAFWYMVREG-GLWESLEGASEWVADFLLQ 890
            EGP    CR++L L  QL    H   +  + + AR+ +   ++L+  D  +     AR  L+R+ ++    + AR + +R P D    + +S A IEFV+WSV++EDGS  E A + LR+A  AN F A+ IA  + F++VVE+ DEIE   AG++ EA  Y   E  G W   EGA+EW+ + +L+
Sbjct:  197 EGPPQPYCRQFLSLLMQLG---HLSVEAKKLKSAREAFLECIDLEGTDPNSVVVTMARARLMRMCVEANRPESARRLWERIPHDSTAWVRYSAALIEFVSWSVIEEDGSSRERAEEMLRKAIEANKFCAYYIAFNDTFEKVVEYGDEIEDAEAGTLEEAIEYCHSEQMGFWLGTEGAAEWIREVILR 380
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11947.1661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPV9_ECTSI3.170e-25495.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3Z8_9STRA1.830e-5741.83Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4MTR9_9STRA1.890e-2236.90Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11947contigEcto-sp13_S_contig11947:1322..5235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score379.8
Seed ortholog evalue8.2e-103
Seed eggNOG ortholog2880.D7FPV9
Model size1597
Hectar predicted targeting categoryother localisation
Exons7
EggNOG OGs2C0FH@1,2QU7Q@2759
Cds size624
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11947.1661.1prot_Ecto-sp13_S_contig11947.1661.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11947 1699..3287 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.711895-UTR-Ecto-sp13_S_contig11947:1321..16981681462632.711895-UTR-Ecto-sp13_S_contig11947:1321..1698Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11947 1322..1698 -
1681462632.7477071-UTR-Ecto-sp13_S_contig11947:3287..33121681462632.7477071-UTR-Ecto-sp13_S_contig11947:3287..3312Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11947 3288..3312 -
1681462632.7574005-UTR-Ecto-sp13_S_contig11947:3643..37481681462632.7574005-UTR-Ecto-sp13_S_contig11947:3643..3748Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11947 3644..3748 -
1681462632.7674901-UTR-Ecto-sp13_S_contig11947:3973..40551681462632.7674901-UTR-Ecto-sp13_S_contig11947:3973..4055Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11947 3974..4055 -
1681462632.7776794-UTR-Ecto-sp13_S_contig11947:4408..47391681462632.7776794-UTR-Ecto-sp13_S_contig11947:4408..4739Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11947 4409..4739 -
1681462632.7870429-UTR-Ecto-sp13_S_contig11947:5182..52351681462632.7870429-UTR-Ecto-sp13_S_contig11947:5182..5235Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11947 5183..5235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.72199-CDS-Ecto-sp13_S_contig11947:1698..20291681462632.72199-CDS-Ecto-sp13_S_contig11947:1698..2029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11947 1699..2029 -
1681462632.730146-CDS-Ecto-sp13_S_contig11947:2473..26101681462632.730146-CDS-Ecto-sp13_S_contig11947:2473..2610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11947 2474..2610 -
1681462632.738684-CDS-Ecto-sp13_S_contig11947:3131..32871681462632.738684-CDS-Ecto-sp13_S_contig11947:3131..3287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11947 3132..3287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11947.1661.1

>prot_Ecto-sp13_S_contig11947.1661.1 ID=prot_Ecto-sp13_S_contig11947.1661.1|Name=mRNA_Ecto-sp13_S_contig11947.1661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MAWSLAAIEFVAWSVLQEDGSGEEVAGKALREACGANPFVAWNIAHREVF
DEVVEHADEIESPPAGSVMEAFWYMVREGGLWESLEGASEWVADFLLQNE
MLPPNPHQGDDGVVAGEDSKGDSGGNASDGGGREEKRVRQASADEAGDGE
EEEGSTKTVLSEGDIDNDKSNAEMFANMFETAVGMAAELAEQQLGMEEGE
GEEEASA*
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mRNA from alignment at Ecto-sp13_S_contig11947:1322..5235-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11947.1661.1 ID=mRNA_Ecto-sp13_S_contig11947.1661.1|Name=mRNA_Ecto-sp13_S_contig11947.1661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11947:1322..5235- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTACCGGCCACCGGTGCACGTGGCCCCGCTCGACCCGGAGCTAAAGCGC
AAGGTGAGGAGGGAGGAACAACAGGCCGGGCGTTGAAAGCGTTGGGGAGG
CGTTTGCGGGTAGGGGAGGAATCGTTGTTCTTTGCTCATTTCGTTTGCCC
GGTTTCAGTATTGTTGACCTCGAAGCATGTACGCACATGTACTTCCGCAT
AGATCCCCCCTCCTACATTTGGGAGGCAAGAGTAGCGCACGCGCTGCTGA
GGAGCGCAACTGCATACGCCAGGTTTAGAGCATCACGTAAGCACACTGCT
CTCTGGACTTGTTTTCGAGCAATCGACGGTGGCGACCAGTCCAGTGTGTG
AGCTAGGGGACAGGGGACGAAGCTAAGACAACCCTTCGAGTACGATCTAT
CAACTGACTCACTTACCTCGCCTGCAACCCCCCCCCCCCATTGTGTATTT
TGCCCTTGTCGTTCCTCTTGGGGGCCATGGCACACATCCGTCGCAGAGGC
GTCGGCGCGACTTCTACGACCTAGACACGTCGCACTGGAAGCTCACGGGG
GCGGCGAGGCCGGCGGACTCCCTCCCGGGGGCCGGGGGCACGGAGCTCGT
GAACGAGCGGGAGGACTGGGAGGCCGGCGAGGACTTGTTCCAGAAGCTGG
CGGGCGTCAGCAGCAGCGGAGGCTCCGGCGGCGGAAACGACACCGACAGC
GACGATGACAGCAGCAGCGATAACGGTGACGACGACGGTGGCGGTGAAGA
GGGCAGAGCCAGGAAGAAAGGGGAGACTGGTCGAGGCGGCTTCTATGAAG
GGCCGGAGGCCTGCAGGGAGTACCTCGGTGAGGGAGAATGGGAGACAAGA
CAGACAGACAGACAGAAGACGGGTACTTTTGGAGTGGCCCGCCTTGGTAT
CTGCCTTCTCTACATGTGTTTTGTGTTTTTGCATGTTTAGGAAGTGTGCG
TGTTTGTCCCATCTTTTCTGGCGCCAGTCTACAGGCCTGTCGGTGTTGGT
ATATGTTTGACGTGTCAGCCGGGGTCACACAAGAGGAAGGTCCCACAAGA
ACTTTTTTCGTTGTACATCCAACAAGCGTTTCGATGTGGATCAGCAGCGT
CTCAACGCATACTTTCTTTTGCGTCGATTTTCTTGTTCGAATTCGTCGCT
TTTTGTGCGCCTGTCGCCAATTTTTCTCAGACCTGAACCACCAGCTTGCC
CAAAGGCTGCACGACGGCGGCAAGGAATCCCAGACGGAAGAGGCCCGCAA
GCGTTACCAGAGGTACGAACATGGTCTACCCGTGCGACAGCGCTCATCGA
AGAGCACCAAAAGACAAGGGTGGGCGGGGGAGAGCTCGTCTCATTTGTTG
AAGTGTCATTTTTTTCTACGCCTGAGGGCATGCGGCTTGTTATTGGCGGC
CGTACAGAGGCACCCGCCAATCGCTACTTTTGTGTGCACGAAACCCTGCA
TCTCCGCTGCACCGCGTTGATACCTTTGCCCTGGTAGGTCGCTGGAGCTC
GACCCGGTGGACCACGTGAATGCGAGAAGAGGCCTGGTCCGTCTTCTGCT
GGACGGGGGCGACGCGGACAAGGCCCGAGCGGTCATCGATAGGTGAGCGT
CGTCGTTGTTATGTTGTTGCTGCTGCTGTCATTGGTTACGTCTCTCTACC
GAAGCATTTATCGGTCCGGGCAGCTGGCTCGATTATCCCGCACGTGCGAG
CGAGCGAGAGAGAGAGAGAGAGACAGAGAGGGGGGGGGGGGGGGGAGGGG
GGAAAAAAGACCCCTTAAAAAAAATACAAAAACCCTCACTTTGGAAAAAN
NNNNNNNAGCAGAGAGGAAACAGACACCCTATCTACAACTACACTAACCT
GCACTTGCGAAAGAGATCCTGACCGAGAGCACTAACCGAATCCACAAACG
AACGGACACGAAAATCCGTACAGGTTTCCCGACGACCGCGGGTGCGAGAT
GGCCTGGTCGTTGGCGGCGATCGAGTTTGTGGCGTGGTCGGTGCTGCAGG
AGGACGGCTCCGGGGAAGAGGTAGCCGGAAAGGCTCTCCGGGAGGCGTGC
GGGGCAAACCCGTTCGTGGCGTGGAACATCGCCCACCGAGAAGTGTTCGA
CGAGGTGTGTCTGCTATGTAGATGTAGATGGAGGGGCACCGCGAGTCATG
AAGGGAGAGGGAGAGGGGTGAGAGTTTGTTGCTGCTTGTTTTCCGTGTCT
GTTGCGTTTGGTTTGTTGTCTGTCAGCCCGTGTAGGCGTGACGTCATTCC
CATGTCTGCTCTGCTGCATGCAACTTCTTTGGTTGCCATCTTTGGTTCAA
TTCGTTTTCTCGTTTCGCTTCGTTCACAGGCGCTCTCCTTCCTCCCGCTC
ACTGTATTCTGTCATTCGTGTATCATTCTCGTTTGTGTTTTTGGGGCCGA
GGCAGCATCGTTCGTGTCTTGACGGACAACGAGAGATGTTTAATGCAAGG
TGCATTGCGTGTGGATGGCCATCTGGCGAGATGACTGGTGGTATGGCGTG
ATATATTGCACACGATCGTTTCACGAAGCCAGAGCGCTTTGCGCGCGTGG
AGTGACCTCCCGCGTTACTTTCTGCAGTTCCTTTACGTCGGAGTCCCTCC
CCCCCCCCGGTTCTCATTGCAACAGGTGGTGGAGCATGCAGATGAGATCG
AAAGCCCTCCGGCGGGGTCCGTGATGGAGGCGTTCTGGTACATGGTACGG
GAGGGGGGCCTGTGGGAGAGCCTGGAGGGGGCGTCGGAATGGGTGGCTGA
CTTCTTGCTGCAGTGAGTGCCGTAGAAGAACACGCACGCGGGCGTGCCGG
GACGCTGGCGTGGCAATTGCGCCACCTCCATGCTGCTGTGCATGAGGTGC
TCTAGTTTCATGCGGTTGACTACTGTTTGGCGTTGGTTCGATGCTCACCT
TCTGTCGGCCGATGCGCGGCTTACTGGCTGGCTGGTAGTTTGAAATTGCC
TTCCCTACGTCGCTGTAAGACAGAGGCAGACCAATCACCTGCACTGCAGG
CGGGTTGAAGCATCCACGGGGGCGCTCTAGCGATGCTCTGCGGTTTTGGA
GCCTGCAAATCGGCGTCTATCTCAAACCCCACTGGTTGCAGCTGTTTGCT
CCCCCCGCGGCCAGAATTTTTCGATCGCGAAAATAATGCTCGCCGCTCGT
TGCAACAAGAGGGCTGCAATCAGCCGTCGCGCGTGCGCTTTTTTTTTTTG
TTGCAGGAATGAAATGCTTCCTCCGAACCCGCACCAGGGCGACGATGGCG
TAGTGGCCGGTGAGGACAGCAAGGGCGACAGCGGCGGCAATGCCAGCGAC
GGTGGAGGTCGGGAGGAGAAGCGAGTCCGCCAGGCTTCTGCTGATGAGGC
TGGTGATGGTGAGGAGGAGGAAGGCTCGACGAAGACGGTGCTGTCGGAGG
GCGACATCGACAACGACAAGAGCAACGCGGAAATGTTTGCCAACATGTTC
GAGACCGCGGTGGGCATGGCCGCGGAGTTGGCCGAGCAGCAGCTGGGGAT
GGAGGAAGGGGAAGGGGAGGAAGAGGCGAGTGCATAGGGGAGAGGCATCG
TTGGCCGGGTAGCGAGGGGGAGCGAGAGGGAGGAAAAAAACGGTGACGAG
GCGCGCATTGTTTTCATGAAAAATGAGGCAGGGATTTCGGCGGGATTTCG
GACTCGAAGAGTCGAAGAGAGCAGGCAACAACAGCACCTGAGCGGTGCCA
TTGAGGAAGGATTTTGTTGAAATAATCTTCTAGACCTGGATGTGGGTGTC
ATCATTGTTGAATCGAACGATCTGAGACTTTTTCCCGCGGTGGAGGATCA
CATTTAAGCCGCTAGTGCTTGCTGAATGTTTTCAAAATCACCGCCGGCAT
GGCGCATTTGGATTTTGGACAACGGCGGTGGTGGTGGCGAGCGCGTGTGC
AGAGGACAAGGTTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11947:1322..5235-

>mRNA_Ecto-sp13_S_contig11947.1661.1 ID=mRNA_Ecto-sp13_S_contig11947.1661.1|Name=mRNA_Ecto-sp13_S_contig11947.1661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11947:1322..5235- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTGGTCGTTGGCGGCGATCGAGTTTGTGGCGTGGTCGGTGCTGCA
GGAGGACGGCTCCGGGGAAGAGGTAGCCGGAAAGGCTCTCCGGGAGGCGT
GCGGGGCAAACCCGTTCGTGGCGTGGAACATCGCCCACCGAGAAGTGTTC
GACGAGGTGGTGGAGCATGCAGATGAGATCGAAAGCCCTCCGGCGGGGTC
CGTGATGGAGGCGTTCTGGTACATGGTACGGGAGGGGGGCCTGTGGGAGA
GCCTGGAGGGGGCGTCGGAATGGGTGGCTGACTTCTTGCTGCAGAATGAA
ATGCTTCCTCCGAACCCGCACCAGGGCGACGATGGCGTAGTGGCCGGTGA
GGACAGCAAGGGCGACAGCGGCGGCAATGCCAGCGACGGTGGAGGTCGGG
AGGAGAAGCGAGTCCGCCAGGCTTCTGCTGATGAGGCTGGTGATGGTGAG
GAGGAGGAAGGCTCGACGAAGACGGTGCTGTCGGAGGGCGACATCGACAA
CGACAAGAGCAACGCGGAAATGTTTGCCAACATGTTCGAGACCGCGGTGG
GCATGGCCGCGGAGTTGGCCGAGCAGCAGCTGGGGATGGAGGAAGGGGAA
GGGGAGGAAGAGGCGAGTGCATAG
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